Search Results - "Python Interface"

Introducing Parselmouth: A Python interface to Praat by Jadoul, Yannick, Thompson, Bill, de Boer, Bart

“…•Parselmouth makes Praat functionality available in Python.•This allows usage of sophisticated acoustic analyses in this programming language.•We provide…”
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pybliometrics: Scriptable bibliometrics using a Python interface to Scopus by Rose, Michael E., Kitchin, John R.

“…We present a wrapper for the Scopus RESTful API written for Python 3. The wrapper allows users to access the Scopus database via user-friendly interfaces and…”
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SBML2HYB: a Python interface for SBML compatible hybrid modeling by Pinto, José, Costa, Rafael S, Alexandre, Leonardo, Ramos, João, Oliveira, Rui

“…Abstract Summary Here, we present sbml2hyb, an easy-to-use standalone Python tool that facilitates the conversion of existing mechanistic models of biological…”
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i-PI: A Python interface for ab initio path integral molecular dynamics simulations by Ceriotti, Michele, More, Joshua, Manolopoulos, David E.

“…Recent developments in path integral methodology have significantly reduced the computational expense of including quantum mechanical effects in the nuclear…”
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Flopy: The Python Interface for MODFLOW by Leaf, Andrew T., Fienen, Michael N.

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PyAlbany: A Python interface to the C++ multiphysics solver Albany by Liegeois, Kim, Perego, Mauro, Hartland, Tucker

“…). In this paper we introduce PyAlbany, a newly developed Python interface to the Albany library…”
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JBrowse Jupyter: a Python interface to JBrowse 2 by De Jesus Martinez, Teresa, Hershberg, Elliot A, Guo, Emma, Stevens, Garrett J, Diesh, Colin, Xie, Peter, Bridge, Caroline, Cain, Scott, Haw, Robin, Buels, Robert M, Stein, Lincoln D, Holmes, Ian H

“… Results We have developed a package that provides a Python interface to JBrowse 2’s suite of embeddable components, including the primary Linear Genome View…”
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scampy – A sub-halo clustering and abundance matching based python interface for painting galaxies on the dark matter halo/sub-halo hierarchy by Ronconi, Tommaso, Lapi, Andrea, Viel, Matteo, Sartori, Alberto

“…ABSTRACT We present a computational framework for ‘painting’ galaxies on top of the dark matter halo/sub-halo hierarchy obtained from N-body simulations. The…”
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ClusTCR: a python interface for rapid clustering of large sets of CDR3 sequences with unknown antigen specificity by Valkiers, Sebastiaan, Van Houcke, Max, Laukens, Kris, Meysman, Pieter

“…Abstract Motivation The T-cell receptor (TCR) determines the specificity of a T-cell towards an epitope. As of yet, the rules for antigen recognition remain…”
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An array-oriented Python interface for FastJet by Roy, Aryan, Pivarski, Jim, Freer, Chad Wells

“…Analysis on HEP data is an iterative process in which the results of one step often inform the next. In an exploratory analysis, it is common to perform one…”
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Py6S: A Python interface to the 6S radiative transfer model by Wilson, R.T.

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Chromo: A high-performance python interface to hadronic event generators for collider and cosmic-ray simulations by Fedynitch, Anatoli, Dembinski, Hans, Prosekin, Anton

“… The Chromo package provides a unified Python interface to multiple widely used hadronic event generators, including EPOS, DPMJet, Sibyll, QGSJet, and Pythia…”
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pyCRTM: A python interface for the community radiative transfer model by Karpowicz, Bryan M., Stegmann, Patrick G., Johnson, Benjamin T., Christophersen, Hui W., Hyer, Edward J., Lambert, Andrew, Simon, Eric

“…•A new python interface for the community radiative transfer model (pyCRTM) is presented.•Applications of pyCRTM leveraging other python tools such as jupyter notebooks…”
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A Fortran–Python interface for integrating machine learning parameterization into earth system models by Zhang, Tao, Morcrette, Cyril, Zhang, Meng, Lin, Wuyin, Xie, Shaocheng, Liu, Ye, Van Weverberg, Kwinten, Rodrigues, Joana

“…Parameterizations in earth system models (ESMs) are subject to biases and uncertainties arising from subjective empirical assumptions and incomplete…”
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ConKit: a python interface to contact predictions by Simkovic, Felix, Thomas, Jens M H, Rigden, Daniel J

“… We present ConKit , an open source, modular and extensible Python interface which allows facile conversion between formats and provides an interface to analyses of sequence alignments and sets of contact predictions…”
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Chemspyd: An open-source python interface for Chemspeed robotic chemistry and materials platforms by Seifrid, Martin, Strieth-Kalthoff, Felix, Haddadnia, Mohammad, Wu, Tony C., Alca, Emre, Bodo, Leticia, Arellano-Rubach, Sebastian, Yoshikawa, Naruki, Skreta, Marta, Keunen, Rachel, Aspuru-Guzik, Alán

“…We introduce Chemspyd , a lightweight, open-source Python package for operating the popular laboratory robotic platforms from Chemspeed Technologies. As an…”
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PyAlbany: A Python interface to the C++ multiphysics solver Albany by Liegeois, Kim Anne J., Perego, Mauro, Hartland, Tucker

“…). In this paper we introduce PyAlbany, a newly developed Python interface to the Albany library…”
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gmxapi: A GROMACS-native Python interface for molecular dynamics with ensemble and plugin support by Irrgang, M. Eric, Davis, Caroline, Kasson, Peter M.

“… The Python interface permits multiple levels of integration with the core GROMACS libraries, and legacy support is provided via an interface that mimics the command-line syntax, so that all…”
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MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface by Husar, Adam, Ordyan, Mariam, Garcia, Guadalupe C., Yancey, Joel G., Saglam, Ali S., Faeder, James R., Bartol, Thomas M., Kennedy, Mary B., Sejnowski, Terrence J.

“…Biochemical signaling pathways in living cells are often highly organized into spatially segregated volumes, membranes, scaffolds, subcellular compartments,…”
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PICOSS: Python Interface for the Classification of Seismic Signals by Bueno, A., Zuccarello, L., Díaz-Moreno, A., Woollam, J., Titos, M., Benítez, C., Álvarez, I., Prudencio, J., De Angelis, S.

“… Here, we present PICOSS (Python Interface for the Classification of Seismic Signals), a modular data-curator platform for volcano-seismic data analysis, including detection, segmentation and classification…”
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