Suchergebnisse - "Python (programming language)"

Array programming with NumPy von Harris, Charles R., Millman, K. Jarrod, van der Walt, Stéfan J., Gommers, Ralf, Virtanen, Pauli, Cournapeau, David, Wieser, Eric, Taylor, Julian, Berg, Sebastian, Smith, Nathaniel J., Kern, Robert, Picus, Matti, Hoyer, Stephan, van Kerkwijk, Marten H., Brett, Matthew, Haldane, Allan, del Río, Jaime Fernández, Wiebe, Mark, Peterson, Pearu, Gérard-Marchant, Pierre, Sheppard, Kevin, Reddy, Tyler, Weckesser, Warren, Abbasi, Hameer, Gohlke, Christoph, Oliphant, Travis E.

“… Array programming provides a powerful, compact and expressive syntax for accessing, manipulating and operating on data in vectors, matrices and …”
Volltext

PF[DELTA]Screen - an open-source tool for automated PFAS feature prioritization in non-target HRMS data von Zweigle, Jonathan, Bugsel, Boris, Fabregat-Palau, Joel, Zwiener, Christian

“… Per- and polyfluoroalkyl substances (PFAS) are a huge group of anthropogenic chemicals with unique properties that are used in countless products and …”
Volltext

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads von Uliano-Silva, Marcela, Ferreira, João Gabriel R. N., Krasheninnikova, Ksenia, Formenti, Giulio, Abueg, Linelle, Torrance, James, Myers, Eugene W., Durbin, Richard, Blaxter, Mark, McCarthy, Shane A.

“… Background  PacBio high fidelity (HiFi) sequencing reads are both long (15–20 kb) and highly accurate (> Q20). Because of these properties, they have …”
Volltext

MDAnalysis: A toolkit for the analysis of molecular dynamics simulations von Michaud-Agrawal, Naveen, Denning, Elizabeth J., Woolf, Thomas B., Beckstein, Oliver

“… MDAnalysis is an object‐oriented library for structural and temporal analysis of molecular dynamics (MD) simulation trajectories and individual protein …”
Volltext

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks von Naldi, Aurélien, Hernandez, Céline, Levy, Nicolas, Stoll, Gautier, Monteiro, Pedro T., Chaouiya, Claudine, Helikar, Tomáš, Zinovyev, Andrei, Calzone, Laurence, Cohen-Boulakia, Sarah, Thieffry, Denis, Paulevé, Loïc

“… Analysing models of biological networks typically relies on workflows in which different software tools with sensitive parameters are chained together, many …”
Volltext

SymPy: symbolic computing in Python von Meurer, Aaron, Smith, Christopher P., Paprocki, Mateusz, Čertík, Ondřej, Kirpichev, Sergey B., Rocklin, Matthew, Kumar, AMiT, Ivanov, Sergiu, Moore, Jason K., Singh, Sartaj, Rathnayake, Thilina, Vig, Sean, Granger, Brian E., Muller, Richard P., Bonazzi, Francesco, Gupta, Harsh, Vats, Shivam, Johansson, Fredrik, Pedregosa, Fabian, Curry, Matthew J., Terrel, Andy R., Roučka, Štěpán, Saboo, Ashutosh, Fernando, Isuru, Kulal, Sumith, Cimrman, Robert, Scopatz, Anthony

“… SymPy is an open source computer algebra system written in pure Python. It is built with a focus on extensibility and ease of use, through both interactive and …”
Volltext

PyPSA: Python for Power System Analysis von Brown, Thomas, Hörsch, Jonas, Schlachtberger, David

“… Python for Power System Analysis (PyPSA) is a free software toolbox for simulating and optimising modern electrical power systems over multiple periods. PyPSA …”
Volltext

SDMtoolbox 2.0: the next generation Python-based GIS toolkit for landscape genetic, biogeographic and species distribution model analyses von Brown, Jason L., Bennett, Joseph R., French, Connor M.

“… SDMtoolbox 2.0 is a software package for spatial studies of ecology, evolution, and genetics. The release of SDMtoolbox 2.0 allows researchers to use the most …”
Volltext

Automated microstructural segmentation and grain size measurement of Al + SiC nanocomposites using advanced image processing techniques on backscattered electron images von Harikrishna, Katika, Nithin, Abeyram, Davidson, M.J.

“… Grain size analysis is crucial for understanding material properties, yet traditional manual methods are often time-consuming and labor-intensive. This study …”
Volltext

Pysteps: an open-source Python library for probabilistic precipitation nowcasting (v1.0) von Pulkkinen, Seppo, Nerini, Daniele, Pérez Hortal, Andrés A., Velasco-Forero, Carlos, Seed, Alan, Germann, Urs, Foresti, Loris

“… Pysteps is an open-source and community-driven Python library for probabilistic precipitation nowcasting, that is, very-short-range forecasting (0–6 h). The …”
Volltext

Cooltools: Enabling high-resolution Hi-C analysis in Python von Abdennur, Nezar, Abraham, Sameer, Fudenberg, Geoffrey, Flyamer, Ilya M., Galitsyna, Aleksandra A., Goloborodko, Anton, Imakaev, Maxim, Oksuz, Betul A., Venev, Sergey V., Xiao, Yao

“… Chromosome conformation capture (3C) technologies reveal the incredible complexity of genome organization. Maps of increasing size, depth, and resolution are …”
Volltext

Helipad: A Framework for Agent-Based Modeling in Python von Harwick, Cameron

“… Agent-based modeling tools commonly trade off usability against power and vice versa. On the one hand, full development environments like NetLogo feature a …”
Volltext

BindsNET: A Machine Learning-Oriented Spiking Neural Networks Library in Python von Hazan, Hananel, Saunders, Daniel J., Khan, Hassaan, Patel, Devdhar, Sanghavi, Darpan T., Siegelmann, Hava T., Kozma, Robert

“… The development of spiking neural network simulation software is a critical component enabling the modeling of neural systems and the development of …”
Volltext

SSR_(V)ibraProfiler: a Python package for accurate classification of varieties using SSRs with intra-variety specificity and inter-variety polymorphism von Jiang, Chenhao, Dong, Chuan, Wu, Zhenzhen, Shi, Chenyi, Ye, Qiannan, Wu, Xiaopei, Ma, Siyi, Wen, Yuming, Yu, Guoping, Wu, Jiasheng, Zhang, Chengjun

“… Simple sequence repeats (SSRs) are widely used as molecular markers; however, traditional development of SSR molecular markers heavily relies on experimental …”
Volltext

chiLife: An open-source Python package for in silico spin labeling and integrative protein modeling von Tessmer, Maxx H., Stoll, Stefan

“… Here we introduce chiLife, a Python package for site-directed spin label (SDSL) modeling for electron paramagnetic resonance (EPR) spectroscopy, in particular …”
Volltext

CosinorPy: a python package for cosinor-based rhythmometry von Moskon, Miha

“… Background Even though several computational methods for rhythmicity detection and analysis of biological data have been proposed in recent years, classical …”
Volltext

Efficiency and accuracy of GPU-parallelized Fourier spectral methods for solving phase-field models von Boccardo, A.D., Tong, M., Leen, S.B., Tourret, D., Segurado, J.

“… Phase-field models are widely employed to simulate microstructure evolution during processes such as solidification or heat treatment. The resulting partial …”
Volltext

Eelbrain, a Python toolkit for time-continuous analysis with temporal response functions von Brodbeck, Christian, Das, Proloy, Gillis, Marlies, Kulasingham, Joshua P, Bhattasali, Shohini, Gaston, Phoebe, Resnik, Philip, Simon, Jonathan Z

“… Even though human experience unfolds continuously in time, it is not strictly linear; instead, it entails cascading processes building hierarchical cognitive …”
Volltext

Biotite: a unifying open source computational biology framework in Python von Kunzmann, Patrick, Hamacher, Kay

“… Background As molecular biology is creating an increasing amount of sequence and structure data, the multitude of software to analyze this data is also rising …”
Volltext

The Fusion Fuel Cycle Simulator — towards integrated dynamic process simulation of fusion fuel cycles von Teichmann, Tim, Schwenzer, Jonas, Day, Christian, Matsunaga, Yoshinao, McGrady, John, Kume, Yoshifumi, Baus, Colin, Konishi, Satoshi, Dashliborun, Amir Motamed

“… Kyoto Fusioneering in collaboration with Canadian Nuclear Laboratories, under the auspice of Fusion Fuel Cycles Inc. is developing the Fusion Fuel Cycle …”
Volltext