Suchergebnisse - "Molecular ecology"

Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics von Rochette, Nicolas C., Rivera‐Colón, Angel G., Catchen, Julian M.

“… For half a century population genetics studies have put type II restriction endonucleases to work. Now, coupled with massively‐parallel, short‐read sequencing, …”
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Population genomics for wildlife conservation and management von Hohenlohe, Paul A., Funk, W. Chris, Rajora, Om P.

“… Biodiversity is under threat worldwide. Over the past decade, the field of population genomics has developed across nonmodel organisms, and the results of this …”
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Environmental DNA metabarcoding: Transforming how we survey animal and plant communities von Deiner, Kristy, Bik, Holly M., Mächler, Elvira, Seymour, Mathew, Lacoursière‐Roussel, Anaïs, Altermatt, Florian, Creer, Simon, Bista, Iliana, Lodge, David M., Vere, Natasha, Pfrender, Michael E., Bernatchez, Louis

“… The genomic revolution has fundamentally changed how we survey biodiversity on earth. High‐throughput sequencing (“HTS”) platforms now enable the rapid …”
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Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data? von Deagle, Bruce E., Thomas, Austen C., McInnes, Julie C., Clarke, Laurence J., Vesterinen, Eero J., Clare, Elizabeth L., Kartzinel, Tyler R., Eveson, J. Paige

“… Advances in DNA sequencing technology have revolutionized the field of molecular analysis of trophic interactions, and it is now possible to recover counts of …”
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Best practices in metabarcoding of fungi: From experimental design to results von Tedersoo, Leho, Bahram, Mohammad, Zinger, Lucie, Nilsson, R. Henrik, Kennedy, Peter G., Yang, Teng, Anslan, Sten, Mikryukov, Vladimir

“… The development of high‐throughput sequencing (HTS) technologies has greatly improved our capacity to identify fungi and unveil their ecological roles across a …”
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A beginner's guide to low‐coverage whole genome sequencing for population genomics von Lou, Runyang Nicolas, Jacobs, Arne, Wilder, Aryn P., Therkildsen, Nina Overgaard

“… Low‐coverage whole genome sequencing (lcWGS) has emerged as a powerful and cost‐effective approach for population genomic studies in both model and nonmodel …”
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The long‐standing significance of genetic diversity in conservation von DeWoody, J. Andrew, Harder, Avril M., Mathur, Samarth, Willoughby, Janna R.

“… Since allozymes were first used to assess genetic diversity in the 1960s and 1970s, biologists have attempted to characterize gene pools and conserve the …”
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Meta‐analysis shows both congruence and complementarity of DNA and eDNA metabarcoding to traditional methods for biological community assessment von Keck, François, Blackman, Rosetta C., Bossart, Raphael, Brantschen, Jeanine, Couton, Marjorie, Hürlemann, Samuel, Kirschner, Dominik, Locher, Nadine, Zhang, Heng, Altermatt, Florian

“… DNA metabarcoding is increasingly used for the assessment of aquatic communities, and numerous studies have investigated the consistency of this technique with …”
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Environmental DNA: What's behind the term? Clarifying the terminology and recommendations for its future use in biomonitoring von Pawlowski, Jan, Apothéloz‐Perret‐Gentil, Laure, Altermatt, Florian

“… The last decade brought a spectacular development of so‐called environmental (e)DNA studies. In general, “environmental DNA” is defined as DNA isolated from …”
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Comparing methods for detecting multilocus adaptation with multivariate genotype–environment associations von Forester, Brenna R., Lasky, Jesse R., Wagner, Helene H., Urban, Dean L.

“… Identifying adaptive loci can provide insight into the mechanisms underlying local adaptation. Genotype–environment association (GEA) methods, which identify …”
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Ecosystems monitoring powered by environmental genomics: A review of current strategies with an implementation roadmap von Cordier, Tristan, Alonso‐Sáez, Laura, Apothéloz‐Perret‐Gentil, Laure, Aylagas, Eva, Bohan, David A., Bouchez, Agnès, Chariton, Anthony, Creer, Simon, Frühe, Larissa, Keck, François, Keeley, Nigel, Laroche, Olivier, Leese, Florian, Pochon, Xavier, Stoeck, Thorsten, Pawlowski, Jan, Lanzén, Anders

“… A decade after environmental scientists integrated high‐throughput sequencing technologies in their toolbox, the genomics‐based monitoring of anthropogenic …”
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Cryptic species as a window into the paradigm shift of the species concept von Fišer, Cene, Robinson, Christopher T., Malard, Florian

“… The species concept is the cornerstone of biodiversity science, and any paradigm shift in the delimitation of species affects many research fields. Many …”
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How quantitative is metabarcoding: A meta‐analytical approach von Lamb, Philip D., Hunter, Ewan, Pinnegar, John K., Creer, Simon, Davies, Richard G., Taylor, Martin I.

“… Metabarcoding has been used in a range of ecological applications such as taxonomic assignment, dietary analysis and the analysis of environmental DNA …”
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Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding von Valentini, Alice, Taberlet, Pierre, Miaud, Claude, Civade, Raphaël, Herder, Jelger, Thomsen, Philip Francis, Bellemain, Eva, Besnard, Aurélien, Coissac, Eric, Boyer, Frédéric, Gaboriaud, Coline, Jean, Pauline, Poulet, Nicolas, Roset, Nicolas, Copp, Gordon H, Geniez, Philippe, Pont, Didier, Argillier, Christine, Baudoin, Jean‐Marc, Peroux, Tiphaine, Crivelli, Alain J, Olivier, Anthony, Acqueberge, Manon, Le Brun, Matthieu, Møller, Peter R, Willerslev, Eske, Dejean, Tony

“… Global biodiversity in freshwater and the oceans is declining at high rates. Reliable tools for assessing and monitoring aquatic biodiversity, especially for …”
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The K = 2 conundrum von Janes, Jasmine K., Miller, Joshua M., Dupuis, Julian R., Malenfant, René M., Gorrell, Jamieson C., Cullingham, Catherine I., Andrew, Rose L.

“… Assessments of population genetic structure have become an increasing focus as they can provide valuable insight into patterns of migration and gene flow …”
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Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward von Yao, Meng, Zhang, Shan, Lu, Qi, Chen, Xiaoyu, Zhang, Si‐Yu, Kong, Yueqiao, Zhao, Jindong

“… Vast global declines of freshwater and marine fish diversity and population abundance pose serious threats to both ecosystem sustainability and human …”
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DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions von Zinger, Lucie, Bonin, Aurélie, Alsos, Inger G., Bálint, Miklós, Bik, Holly, Boyer, Frédéric, Chariton, Anthony A., Creer, Simon, Coissac, Eric, Deagle, Bruce E., De Barba, Marta, Dickie, Ian A., Dumbrell, Alex J., Ficetola, Gentile Francesco, Fierer, Noah, Fumagalli, Luca, Gilbert, M. Thomas P., Jarman, Simon, Jumpponen, Ari, Kauserud, Håvard, Orlando, Ludovic, Pansu, Johan, Pawlowski, Jan, Tedersoo, Leho, Thomsen, Philip Francis, Willerslev, Eske, Taberlet, Pierre

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Biodiversity and species competition regulate the resilience of microbial biofilm community von Feng, Kai, Zhang, Zhaojing, Cai, Weiwei, Liu, Wenzong, Xu, Meiying, Yin, Huaqun, Wang, Aijie, He, Zhili, Deng, Ye

“… The relationship between biodiversity and ecosystem stability is poorly understood in microbial communities. Biofilm communities in small bioreactors called …”
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Biases in bulk: DNA metabarcoding of marine communities and the methodology involved von Loos, Luna M., Nijland, Reindert

“… With the growing anthropogenic pressure on marine ecosystems, the need for efficient monitoring of biodiversity grows stronger. DNA metabarcoding of bulk …”
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eDNA metabarcoding survey reveals fine‐scale coral reef community variation across a remote, tropical island ecosystem von West, Katrina M., Stat, Michael, Harvey, Euan S., Skepper, Craig L., DiBattista, Joseph D., Richards, Zoe T., Travers, Michael J., Newman, Stephen J., Bunce, Michael

“… Environmental DNA (eDNA) metabarcoding, a technique for retrieving multispecies DNA from environmental samples, can detect a diverse array of marine species …”
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