Search Results - "Lu, Zhiyong"

LitCovid: an open database of COVID-19 literature by Chen, Qingyu, Allot, Alexis, Lu, Zhiyong

“…Abstract Since the outbreak of the current pandemic in 2020, there has been a rapid growth of published articles on COVID-19 and SARS-CoV-2, with about 10 000…”
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PubTator central: automated concept annotation for biomedical full text articles by Wei, Chih-Hsuan, Allot, Alexis, Leaman, Robert, Lu, Zhiyong

“…PubTator Central (https://www.ncbi.nlm.nih.gov/research/pubtator/) is a web service for viewing and retrieving bioconcept annotations in full text biomedical…”
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PubTator: a web-based text mining tool for assisting biocuration by Wei, Chih-Hsuan, Kao, Hung-Yu, Lu, Zhiyong

“…Manually curating knowledge from biomedical literature into structured databases is highly expensive and time-consuming, making it difficult to keep pace with…”
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Community challenges in biomedical text mining over 10 years: success, failure and the future by Huang, Chung-Chi, Lu, Zhiyong

“…One effective way to improve the state of the art is through competitions. Following the success of the Critical Assessment of protein Structure Prediction…”
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PubMed and beyond: biomedical literature search in the age of artificial intelligence by Jin, Qiao, Leaman, Robert, Lu, Zhiyong

“…Biomedical research yields vast information, much of which is only accessible through the literature. Consequently, literature search is crucial for healthcare…”
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ChestX-Ray8: Hospital-Scale Chest X-Ray Database and Benchmarks on Weakly-Supervised Classification and Localization of Common Thorax Diseases by Xiaosong Wang, Yifan Peng, Le Lu, Zhiyong Lu, Bagheri, Mohammadhadi, Summers, Ronald M.

“…The chest X-ray is one of the most commonly accessible radiological examinations for screening and diagnosis of many lung diseases. A tremendous number of…”
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Graphene Nanoarchitectonics: Recent Advances in Graphene‐Based Electrocatalysts for Hydrogen Evolution Reaction by Huang, Huajie, Yan, Minmin, Yang, Cuizhen, He, Haiyan, Jiang, Quanguo, Yang, Lu, Lu, Zhiyong, Sun, Ziqi, Xu, Xingtao, Bando, Yoshio, Yamauchi, Yusuke

“…Under the double pressures of both the energy crisis and environmental pollution, the exploitation and utilization of hydrogen, a clean and renewable power…”
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Text Mining Genotype-Phenotype Relationships from Biomedical Literature for Database Curation and Precision Medicine by Singhal, Ayush, Simmons, Michael, Lu, Zhiyong

“…The practice of precision medicine will ultimately require databases of genes and mutations for healthcare providers to reference in order to understand the…”
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TieNet: Text-Image Embedding Network for Common Thorax Disease Classification and Reporting in Chest X-Rays by Wang, Xiaosong, Peng, Yifan, Lu, Le, Lu, Zhiyong, Summers, Ronald M.

“…Chest X-rays are one of the most common radiological examinations in daily clinical routines. Reporting thorax diseases using chest X-rays is often an…”
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Database resources of the national center for biotechnology information by Sayers, Eric W, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Chan, Jessica, Comeau, Donald C, Connor, Ryan, Funk, Kathryn, Kelly, Chris, Kim, Sunghwan, Madej, Tom, Marchler-Bauer, Aron, Lanczycki, Christopher, Lathrop, Stacy, Lu, Zhiyong, Thibaud-Nissen, Francoise, Murphy, Terence, Phan, Lon, Skripchenko, Yuri, Tse, Tony, Wang, Jiyao, Williams, Rebecca, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

“…Abstract The National Center for Biotechnology Information (NCBI) produces a variety of online information resources for biology, including the GenBank®…”
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Adversarial prompt and fine-tuning attacks threaten medical large language models by Yang, Yifan, Jin, Qiao, Huang, Furong, Lu, Zhiyong

“…The integration of Large Language Models (LLMs) into healthcare applications offers promising advancements in medical diagnostics, treatment recommendations,…”
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DeepSeeNet: A Deep Learning Model for Automated Classification of Patient-based Age-related Macular Degeneration Severity from Color Fundus Photographs by Peng, Yifan, Dharssi, Shazia, Chen, Qingyu, Keenan, Tiarnan D, Agrón, Elvira, Wong, Wai T, Chew, Emily Y, Lu, Zhiyong

“…In assessing the severity of age-related macular degeneration (AMD), the Age-Related Eye Disease Study (AREDS) Simplified Severity Scale predicts the risk of…”
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Risley-prism-based multi-beam scanning LiDAR for high-resolution three-dimensional imaging by Li, Anhu, Liu, Xingsheng, Sun, Jianfeng, Lu, Zhiyong

“…•Coherent light detection and ranging architecture for three-dimensional imaging.•Risley-prism-based multi-beam scanning enables high-resolution spatial…”
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BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale by Chen, Qingyu, Lee, Kyubum, Yan, Shankai, Kim, Sun, Wei, Chih-Hsuan, Lu, Zhiyong

“…A massive number of biological entities, such as genes and mutations, are mentioned in the biomedical literature. The capturing of the semantic relatedness of…”
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Matching patients to clinical trials with large language models by Jin, Qiao, Wang, Zifeng, Floudas, Charalampos S., Chen, Fangyuan, Gong, Changlin, Bracken-Clarke, Dara, Xue, Elisabetta, Yang, Yifan, Sun, Jimeng, Lu, Zhiyong

“…Patient recruitment is challenging for clinical trials. We introduce TrialGPT, an end-to-end framework for zero-shot patient-to-trial matching with large…”
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A survey of current trends in computational drug repositioning by Li, Jiao, Zheng, Si, Chen, Bin, Butte, Atul J., Swamidass, S. Joshua, Lu, Zhiyong

“…Computational drug repositioning or repurposing is a promising and efficient tool for discovering new uses from existing drugs and holds the great potential…”
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Database resources of the National Center for Biotechnology Information by Sayers, Eric W, Beck, Jeffrey, Bolton, Evan E, Bourexis, Devon, Brister, James R, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Kim, Sunghwan, Klimke, William, Marchler-Bauer, Aron, Landrum, Melissa, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, O’Leary, Nuala, Phan, Lon, Rangwala, Sanjida H, Schneider, Valerie A, Skripchenko, Yuri, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

“…Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the…”
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MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank by Mao, Yuqing, Lu, Zhiyong

“…Background MeSH indexing is the task of assigning relevant MeSH terms based on a manual reading of scholarly publications by human indexers. The task is highly…”
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tmChem: a high performance approach for chemical named entity recognition and normalization by Leaman, Robert, Wei, Chih-Hsuan, Lu, Zhiyong

“…Chemical compounds and drugs are an important class of entities in biomedical research with great potential in a wide range of applications, including clinical…”
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Database resources of the National Center for Biotechnology Information by Sayers, Eric W, Beck, Jeff, Brister, J Rodney, Bolton, Evan E, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Ketter, Anne, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Kuznetsov, Anatoliy, Lathrop, Stacy, Lu, Zhiyong, McGarvey, Kelly, Madden, Thomas L, Murphy, Terence D, O’Leary, Nuala, Phan, Lon, Schneider, Valerie A, Thibaud-Nissen, Françoise, Trawick, Bart W, Pruitt, Kim D, Ostell, James

“…Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the…”
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