Suchergebnisse - "Knowledgebase and Database Resources"

FlyBase: a guided tour of highlighted features von Gramates, L Sian, Agapite, Julie, Attrill, Helen, Calvi, Brian R, Crosby, Madeline A, dos Santos, Gilberto, Goodman, Joshua L, Goutte-Gattat, Damien, Jenkins, Victoria K, Kaufman, Thomas, Larkin, Aoife, Matthews, Beverley B, Millburn, Gillian, Strelets, Victor B

“… Abstract FlyBase provides a centralized resource for the genetic and genomic data of Drosophila melanogaster. As FlyBase enters our fourth decade of service to …”
Volltext

The Gene Ontology knowledgebase in 2023 von Aleksander, Suzi A, Balhoff, James, Carbon, Seth, Cherry, J Michael, Drabkin, Harold J, Ebert, Dustin, Harris, Nomi L, Moxon, Sierra, Mungall, Christopher J, Sternberg, Paul W, Thomas, Paul D, Quaglia, Federica, Giglio, Michelle, Antonazzo, Giulia, Attrill, Helen, dos Santos, Gil, Tabone, Christopher J, Zhou, Pinglei, Ahmed, Saadullah H, Asanitthong, Praoparn, Erdol, Meltem N, Gage, Matthew C, Ali Kadhum, Mohamed, Li, Kan Yan Chloe, Michalak, Aleksandra, Pritazahra, Armalya, Saverimuttu, Shirin C C, Su, Renzhi, Thurlow, Kate E, Lovering, Ruth C, Logie, Colin, Oliferenko, Snezhana, Blake, Judith, Corbani, Lori, Ni, Li, Sitnikov, Dmitry, Smith, Cynthia, Seager, James, Cooper, Laurel, Jaiswal, Pankaj, Naithani, Sushma, Lera-Ramirez, Manuel, Rutherford, Kim, Wood, Valerie, De Pons, Jeffrey L, Dwinell, Melinda R, Hayman, G Thomas, Kwitek, Anne E, Laulederkind, Stanley J F, Tutaj, Marek A, Vedi, Mahima, Wang, Shur-Jen, D’Eustachio, Peter, Axelsen, Kristian, Aleksander, Suzi A, Engel, Stacia R, Karra, Kalpana, Miyasato, Stuart R, Nash, Robert S, Weng, Shuai, Wong, Edith D, Bakker, Erika, Berardini, Tanya Z, Reiser, Leonore, Auchincloss, Andrea, Argoud-Puy, Ghislaine, Blatter, Marie-Claude, Boutet, Emmanuel, Breuza, Lionel, Casals-Casas, Cristina, Gruaz-Gumowski, Nadine, Hulo, Chantal, Jungo, Florence, Le Mercier, Philippe, Masson, Patrick, Pedruzzi, Ivo, Pourcel, Lucille, Poux, Sylvain, Rivoire, Catherine, Sundaram, Shyamala, Bowler-Barnett, Emily, Denny, Paul, Ignatchenko, Alexandr, Lock, Antonia, Magrane, Michele, Martin, Maria J, Raposo, Pedro, Speretta, Elena, Tyagi, Nidhi, Warner, Kate, Zaru, Rossana, Diehl, Alexander D, Lee, Raymond, Chan, Juancarlos, Zarowiecki, Magdalena, Fisher, Malcolm, Ponferrada, Virgilio, Zorn, Aaron, Ramachandran, Sridhar, Ruzicka, Leyla

“… Abstract The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products …”
Volltext

FlyBase: updates to the Drosophila genes and genomes database von Öztürk-Çolak, Arzu, Marygold, Steven J, Antonazzo, Giulia, Attrill, Helen, Goutte-Gattat, Damien, Jenkins, Victoria K, Matthews, Beverley B, Millburn, Gillian, Dos Santos, Gilberto, Tabone, Christopher J

“… FlyBase (flybase.org) is a model organism database and knowledge base about Drosophila melanogaster, commonly known as the fruit fly. Researchers from around …”
Weitere Angaben

Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources von Wong, Edith D, Miyasato, Stuart R, Aleksander, Suzi, Karra, Kalpana, Nash, Robert S, Skrzypek, Marek S, Weng, Shuai, Engel, Stacia R, Cherry, J Michael

“… Abstract As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since …”
Volltext

WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans von Davis, Paul, Zarowiecki, Magdalena, Arnaboldi, Valerio, Becerra, Andrés, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, da Veiga Beltrame, Eduardo, Diamantakis, Stavros, Gao, Sibyl, Grigoriadis, Dionysis, Grove, Christian A, Harris, Todd W, Kishore, Ranjana, Le, Tuan, Lee, Raymond Y N, Luypaert, Manuel, Müller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Quinton-Tulloch, Mark, Raciti, Daniela, Rodgers, Faye H, Russell, Matthew, Schindelman, Gary, Singh, Archana, Stickland, Tim, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam J, Yook, Karen, Berriman, Matt, Howe, Kevin L, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

“… Abstract WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research …”
Volltext

WormBase 2024: status and transitioning to Alliance infrastructure von Sternberg, Paul W, Van Auken, Kimberly, Wang, Qinghua, Wright, Adam, Yook, Karen, Zarowiecki, Magdalena, Arnaboldi, Valerio, Becerra, Andrés, Brown, Stephanie, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, Davis, Paul, Diamantakis, Stavros, Dyer, Sarah, Grigoriadis, Dionysis, Grove, Christian A, Harris, Todd, Howe, Kevin, Kishore, Ranjana, Lee, Raymond, Longden, Ian, Luypaert, Manuel, Müller, Hans-Michael, Nuin, Paulo, Quinton-Tulloch, Mark, Raciti, Daniela, Schedl, Tim, Schindelman, Gary, Stein, Lincoln

“… WormBase has been the major repository and knowledgebase of information about the genome and genetics of Caenorhabditis elegans and other nematodes of …”
Weitere Angaben

Mouse Genome Informatics: an integrated knowledgebase system for the laboratory mouse von Baldarelli, Richard M, Smith, Cynthia L, Ringwald, Martin, Richardson, Joel E, Bult, Carol J

“… Mouse Genome Informatics (MGI) is a federation of expertly curated information resources designed to support experimental and computational investigations into …”
Weitere Angaben

Zebrafish information network, the knowledgebase for Danio rerio research von Bradford, Yvonne M, Van Slyke, Ceri E, Ruzicka, Leyla, Singer, Amy, Eagle, Anne, Fashena, David, Howe, Douglas G, Frazer, Ken, Martin, Ryan, Paddock, Holly, Pich, Christian, Ramachandran, Sridhar, Westerfield, Monte

“… Abstract The Zebrafish Information Network (zfin.org) is the central repository for Danio rerio genetic and genomic data. The Zebrafish Information Network has …”
Volltext

Fission stories: using PomBase to understand Schizosaccharomyces pombe biology von Harris, Midori A, Rutherford, Kim M, Hayles, Jacqueline, Lock, Antonia, Bähler, Jürg, Oliver, Stephen G, Mata, Juan, Wood, Valerie

“… Abstract PomBase (www.pombase.org), the model organism database (MOD) for the fission yeast Schizosaccharomyces pombe, supports research within and beyond the …”
Volltext

The Arabidopsis Information Resource in 2024 von Reiser, Leonore, Bakker, Erica, Subramaniam, Sabarinath, Chen, Xingguo, Sawant, Swapnil, Khosa, Kartik, Prithvi, Trilok, Berardini, Tanya Z

“… Since 1999, The Arabidopsis Information Resource (www.arabidopsis.org) has been curating data about the Arabidopsis thaliana genome. Its primary focus is …”
Weitere Angaben

PomBase: a Global Core Biodata Resource-growth, collaboration, and sustainability von Rutherford, Kim M, Lera-Ramírez, Manuel, Wood, Valerie

“… PomBase (https://www.pombase.org), the model organism database (MOD) for fission yeast, was recently awarded Global Core Biodata Resource (GCBR) status by the …”
Weitere Angaben

Xenbase: key features and resources of the Xenopus model organism knowledgebase von Fisher, Malcolm, James-Zorn, Christina, Ponferrada, Virgilio, Bell, Andrew J, Sundararaj, Nivitha, Segerdell, Erik, Chaturvedi, Praneet, Bayyari, Nadia, Chu, Stanley, Pells, Troy, Lotay, Vaneet, Agalakov, Sergei, Wang, Dong Zhuo, Arshinoff, Bradley I, Foley, Saoirse, Karimi, Kamran, Vize, Peter D, Zorn, Aaron M

“… Abstract Xenbase (https://www.xenbase.org/), the Xenopus model organism knowledgebase, is a web-accessible resource that integrates the diverse genomic and …”
Volltext

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources von Engel, Stacia R, Wong, Edith D, Nash, Robert S, Aleksander, Suzi, Alexander, Micheal, Douglass, Eric, Karra, Kalpana, Miyasato, Stuart R, Simison, Matt, Skrzypek, Marek S, Weng, Shuai, Cherry, J Michael

“… Abstract Saccharomyces cerevisiae is used to provide fundamental understanding of eukaryotic genetics, gene product function, and cellular biological …”
Volltext

Harmonizing model organism data in the Alliance of Genome Resources

“… Abstract The Alliance of Genome Resources (the Alliance) is a combined effort of 7 knowledgebase projects: Saccharomyces Genome Database, WormBase, FlyBase, …”
Volltext

2022 updates to the Rat Genome Database: a Findable, Accessible, Interoperable, and Reusable (FAIR) resource von Vedi, Mahima, Smith, Jennifer R, Thomas Hayman, G, Tutaj, Monika, Brodie, Kent C, De Pons, Jeffrey L, Demos, Wendy M, Gibson, Adam C, Kaldunski, Mary L, Lamers, Logan, Laulederkind, Stanley J F, Thota, Jyothi, Thorat, Ketaki, Tutaj, Marek A, Wang, Shur-Jen, Zacher, Stacy, Dwinell, Melinda R, Kwitek, Anne E

“… The Rat Genome Database (RGD, https://rgd.mcw.edu) has evolved from simply a resource for rat genetic markers, maps, and genes, by adding multiple genomic data …”
Weitere Angaben

Updates to the Alliance of Genome Resources central infrastructure

“… The Alliance of Genome Resources (Alliance) is an extensible coalition of knowledgebases focused on the genetics and genomics of intensively studied model …”
Weitere Angaben

What is new in FungiDB: a web-based bioinformatics platform for omics-scale data analysis for fungal and oomycete species von Basenko, Evelina Y, Shanmugasundram, Achchuthan, Böhme, Ulrike, Starns, David, Wilkinson, Paul A, Davison, Helen R, Crouch, Kathryn, Maslen, Gareth, Harb, Omar S, Amos, Beatrice, McDowell, Mary Ann, Kissinger, Jessica C, Roos, David S, Jones, Andrew

“… FungiDB (https://fungidb.org) serves as a valuable online resource that seamlessly integrates genomic and related large-scale data for a wide range of fungal …”
Weitere Angaben

The Unified Phenotype Ontology : a framework for cross-species integrative phenomics von Matentzoglu, Nicolas, Bello, Susan M, Stefancsik, Ray, Alghamdi, Sarah M, Anagnostopoulos, Anna V, Balhoff, James P, Balk, Meghan A, Bradford, Yvonne M, Bridges, Yasemin, Callahan, Tiffany J, Caufield, Harry, Cuzick, Alayne, Carmody, Leigh C, Caron, Anita R, de Souza, Vinicius, Engel, Stacia R, Fey, Petra, Fisher, Malcolm, Gehrke, Sarah, Grove, Christian, Hansen, Peter, Harris, Nomi L, Harris, Midori A, Harris, Laura, Ibrahim, Arwa, Jacobsen, Julius O B, Köhler, Sebastian, McMurry, Julie A, Munoz-Fuentes, Violeta, Munoz-Torres, Monica C, Parkinson, Helen, Pendlington, Zoë M, Pilgrim, Clare, Robb, Sofia M C, Robinson, Peter N, Seager, James, Segerdell, Erik, Smedley, Damian, Sollis, Elliot, Toro, Sabrina, Vasilevsky, Nicole, Wood, Valerie, Haendel, Melissa A, Mungall, Christopher J, McLaughlin, James A, Osumi-Sutherland, David

“… Phenotypic data are critical for understanding biological mechanisms and consequences of genomic variation, and are pivotal for clinical use cases such as …”
Weitere Angaben

Echinobase: a resource to support the echinoderm research community von Telmer, Cheryl A, Karimi, Kamran, Chess, Macie M, Agalakov, Sergei, Arshinoff, Bradley I, Lotay, Vaneet, Wang, Dong Zhuo, Chu, Stanley, Pells, Troy J, Vize, Peter D, Hinman, Veronica F, Ettensohn, Charles A

“… Echinobase (www.echinobase.org) is a model organism knowledgebase serving as a resource for the community that studies echinoderms, a phylum of marine …”
Weitere Angaben

JaponicusDB: rapid deployment of a model organism database for an emerging model species von Rutherford, Kim M, Harris, Midori A, Oliferenko, Snezhana, Wood, Valerie

“… Abstract The fission yeast Schizosaccharomyces japonicus has recently emerged as a powerful system for studying the evolution of essential cellular processes, …”
Volltext