Výsledky vyhľadávania - "Enault, François"

WIsH: who is the host? Predicting prokaryotic hosts from metagenomic phage contigs Autor Galiez, Clovis, Siebert, Matthias, Enault, François, Vincent, Jonathan, Söding, Johannes

“…WIsH predicts prokaryotic hosts of phages from their genomic sequences. It achieves 63% mean accuracy when predicting the host genus among 20 genera for 3…”
Získať plný text

Metavir 2: new tools for viral metagenome comparison and assembled virome analysis Autor Roux, Simon, Tournayre, Jeremy, Mahul, Antoine, Debroas, Didier, Enault, François

“…Background Metagenomics, based on culture-independent sequencing, is a well-fitted approach to provide insights into the composition, structure and dynamics of…”
Získať plný text

PHROG: families of prokaryotic virus proteins clustered using remote homology Autor Terzian, Paul, Olo Ndela, Eric, Galiez, Clovis, Lossouarn, Julien, Pérez Bucio, Rubén Enrique, Mom, Robin, Toussaint, Ariane, Petit, Marie-Agnès, Enault, François

“…Viruses are abundant, diverse and ancestral biological entities. Their diversity is high, both in terms of the number of different protein families encountered…”
Získať plný text

Evolution and Diversity of the Microviridae Viral Family through a Collection of 81 New Complete Genomes Assembled from Virome Reads Autor Roux, Simon, Krupovic, Mart, Poulet, Axel, Debroas, Didier, Enault, François

“…Recent studies suggest that members of the Microviridae (a family of ssDNA bacteriophages) might play an important role in a broad spectrum of environments, as…”
Získať plný text

Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee Autor Turner, Dann, Shkoporov, Andrey N., Lood, Cédric, Millard, Andrew D., Dutilh, Bas E., Alfenas-Zerbini, Poliane, van Zyl, Leonardo J., Aziz, Ramy K., Oksanen, Hanna M., Poranen, Minna M., Kropinski, Andrew M., Barylski, Jakub, Brister, J Rodney, Chanisvili, Nina, Edwards, Rob A., Enault, François, Gillis, Annika, Knezevic, Petar, Krupovic, Mart, Kurtböke, Ipek, Kushkina, Alla, Lavigne, Rob, Lehman, Susan, Lobocka, Malgorzata, Moraru, Cristina, Moreno Switt, Andrea, Morozova, Vera, Nakavuma, Jesca, Reyes Muñoz, Alejandro, Rūmnieks, Jānis, Sarkar, BL, Sullivan, Matthew B., Uchiyama, Jumpei, Wittmann, Johannes, Yigang, Tong, Adriaenssens, Evelien M.

“…This article summarises the activities of the Bacterial Viruses Subcommittee of the International Committee on Taxonomy of Viruses for the period of March…”
Získať plný text

Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages Autor Barylski, Jakub, Enault, François, Dutilh, Bas E, Schuller, Margo BP, Edwards, Robert A, Gillis, Annika, Klumpp, Jochen, Knezevic, Petar, Krupovic, Mart, Kuhn, Jens H, Lavigne, Rob, Oksanen, Hanna M, Sullivan, Matthew B, Jang, Ho Bin, Simmonds, Peter, Aiewsakun, Pakorn, Wittmann, Johannes, Tolstoy, Igor, Brister, J Rodney, Kropinski, Andrew M, Adriaenssens, Evelien M

“…Abstract Tailed bacteriophages are the most abundant and diverse viruses in the world, with genome sizes ranging from 10 kbp to over 500 kbp. Yet, due to…”
Získať plný text

Minimum Information about an Uncultivated Virus Genome (MIUViG) Autor Roux, Simon, Adriaenssens, Evelien M, Dutilh, Bas E, Koonin, Eugene V, Kropinski, Andrew M, Krupovic, Mart, Kuhn, Jens H, Lavigne, Rob, Brister, J Rodney, Varsani, Arvind, Amid, Clara, Aziz, Ramy K, Bordenstein, Seth R, Bork, Peer, Breitbart, Mya, Cochrane, Guy R, Daly, Rebecca A, Desnues, Christelle, Duhaime, Melissa B, Emerson, Joanne B, Enault, François, Fuhrman, Jed A, Hingamp, Pascal, Hugenholtz, Philip, Hurwitz, Bonnie L, Ivanova, Natalia N, Labonté, Jessica M, Lee, Kyung-Bum, Malmstrom, Rex R, Martinez-Garcia, Manuel, Mizrachi, Ilene Karsch, Ogata, Hiroyuki, Páez-Espino, David, Petit, Marie-Agnès, Putonti, Catherine, Rattei, Thomas, Reyes, Alejandro, Rodriguez-Valera, Francisco, Rosario, Karyna, Schriml, Lynn, Schulz, Frederik, Steward, Grieg F, Sullivan, Matthew B, Sunagawa, Shinichi, Suttle, Curtis A, Temperton, Ben, Tringe, Susannah G, Thurber, Rebecca Vega, Webster, Nicole S, Whiteson, Katrine L, Wilhelm, Steven W, Wommack, K Eric, Woyke, Tanja, Wrighton, Kelly C, Yilmaz, Pelin, Yoshida, Takashi, Young, Mark J, Yutin, Natalya, Allen, Lisa Zeigler, Kyrpides, Nikos C, Eloe-Fadrosh, Emiley A

“…We present an extension of the Minimum Information about any (x) Sequence (MIxS) standard for reporting sequences of uncultivated virus genomes. Minimum…”
Získať plný text

Metavir: a web server dedicated to virome analysis Autor Roux, Simon, Faubladier, Michaël, Mahul, Antoine, Paulhe, Nils, Bernard, Aurélien, Debroas, Didier, Enault, François

“…Metavir is a web server dedicated to the analysis of viral metagenomes (viromes). In addition to classical approaches for analyzing metagenomes (general…”
Získať plný text

Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses Autor Roux, Simon, Enault, François, Bronner, Gisèle, Vaulot, Daniel, Forterre, Patrick, Krupovic, Mart

“…Metagenomic studies have uncovered an astonishing diversity of ssDNA viruses encoding replication proteins (Reps) related to those of eukaryotic Circoviridae ,…”
Získať plný text

Assessment of viral community functional potential from viral metagenomes may be hampered by contamination with cellular sequences Autor Roux, Simon, Krupovic, Mart, Debroas, Didier, Forterre, Patrick, Enault, François

“…Although the importance of viruses in natural ecosystems is widely acknowledged, the functional potential of viral communities is yet to be determined. Viral…”
Získať plný text

Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021 Autor Krupovic, Mart, Turner, Dann, Morozova, Vera, Dyall-Smith, Mike, Oksanen, Hanna M., Edwards, Rob, Dutilh, Bas E., Lehman, Susan M., Reyes, Alejandro, Baquero, Diana P., Sullivan, Matthew B., Uchiyama, Jumpei, Nakavuma, Jesca, Barylski, Jakub, Young, Mark J., Du, Shishen, Alfenas-Zerbini, Poliane, Kushkina, Alla, Kropinski, Andrew M., Kurtböke, Ipek, Brister, J. Rodney, Lood, Cédric, Sarkar, B. L., Yigang, Tong, Liu, Ying, Huang, Li, Wittmann, Johannes, Chanishvili, Nina, van Zyl, Leonardo J., Rumnieks, Janis, Mochizuki, Tomohiro, Jalasvuori, Matti, Aziz, Ramy K., Łobocka, Małgorzata, Stedman, Kenneth M., Shkoporov, Andrey N., Gillis, Annika, Peng, Xu, Enault, François, Knezevic, Petar, Lavigne, Rob, Rhee, Sung-Keun, Cvirkaite-Krupovic, Virginija, Moraru, Cristina, Moreno Switt, Andrea I., Poranen, Minna M., Millard, Andrew, Prangishvili, David, Adriaenssens, Evelien M.

“…In this article, we – the Bacterial Viruses Subcommittee and the Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) –…”
Získať plný text

Genomic characteristics and environmental distributions of the uncultivated Far-T4 phages Autor Roux, Simon, Enault, François, Ravet, Viviane, Pereira, Olivier, Sullivan, Matthew B.

“…Viral metagenomics (viromics) is a tremendous tool to reveal viral taxonomic and functional diversity across ecosystems ranging from the human gut to the…”
Získať plný text

Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis Autor Enault, François, Suhre, Karsten, Claverie, Jean-Michel

“…The large amount of completely sequenced genomes allows genomic context analysis to predict reliable functional associations between prokaryotic proteins…”
Získať plný text

Bioinformatics Meets Virology: The European Virus Bioinformatics Center’s Second Annual Meeting Autor Ibrahim, Bashar, Arkhipova, Ksenia, Andeweg, Arno, Posada-Céspedes, Susana, Enault, François, Gruber, Arthur, Koonin, Eugene, Kupczok, Anne, Lemey, Philippe, McHardy, Alice, McMahon, Dino, Pickett, Brett, Robertson, David, Scheuermann, Richard, Zhernakova, Alexandra, Zwart, Mark, Schönhuth, Alexander, Dutilh, Bas, Marz, Manja

“…The Second Annual Meeting of the European Virus Bioinformatics Center (EVBC), held in Utrecht, Netherlands, focused on computational approaches in virology,…”
Získať plný text

CodingDiv: analyzing SNP-level microdiversity to discriminate between coding and noncoding regions in viral genomes Autor Olo Ndela, Eric, Enault, François

“…Abstract Summary Viral genes, that are frequently small genes and/or with large overlaps, are still difficult to predict accurately. To help predict all genes…”
Získať plný text

Empathi: embedding-based phage protein annotation tool by hierarchical assignment Autor Boulay, Alexandre, Leprince, Audrey, Enault, François, Rousseau, Elsa, Galiez, Clovis

“…Bacteriophages, viruses infecting bacteria, are estimated to outnumber their cellular hosts by 10-fold, acting as key players in all microbial ecosystems…”
Získať plný text

VirSorter: mining viral signal from microbial genomic data Autor Roux, Simon, Enault, Francois, Hurwitz, Bonnie L., Sullivan, Matthew B.

“…Viruses of microbes impact all ecosystems where microbes drive key energy and substrate transformations including the oceans, humans and industrial fermenters…”
Získať plný text

Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses Autor Enault, François, Briet, Arnaud, Bouteille, Léa, Roux, Simon, Sullivan, Matthew B, Petit, Marie-Agnès

“…Antibiotic resistance genes (ARGs) are pervasive in gut microbiota, but it remains unclear how often ARGs are transferred, particularly to pathogens…”
Získať plný text

Assessing the Diversity and Specificity of Two Freshwater Viral Communities through Metagenomics Autor Roux, Simon, Enault, Francois, Robin, Agnès, Ravet, Viviane, Personnic, Sébastien, Theil, Sébastien, Colombet, Jonathan, Sime-Ngando, Télesphore, Debroas, Didier

“…Transitions between saline and fresh waters have been shown to be infrequent for microorganisms. Based on host-specific interactions, the presence of specific…”
Získať plný text

Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee Autor Adriaenssens, Evelien M., Sullivan, Matthew B., Knezevic, Petar, van Zyl, Leonardo J., Sarkar, B. L., Dutilh, Bas E., Alfenas-Zerbini, Poliane, Łobocka, Małgorzata, Tong, Yigang, Brister, James Rodney, Moreno Switt, Andrea I., Klumpp, Jochen, Aziz, Ramy Karam, Barylski, Jakub, Uchiyama, Jumpei, Edwards, Rob A., Kropinski, Andrew M., Petty, Nicola K., Clokie, Martha R. J., Kushkina, Alla I., Morozova, Vera V., Duffy, Siobain, Gillis, Annika, Rumnieks, Janis, Kurtböke, İpek, Chanishvili, Nina, Goodridge, Lawrence, Wittmann, Johannes, Lavigne, Rob, Jang, Ho Bin, Prangishvili, David, Enault, Francois, Turner, Dann, Poranen, Minna M., Oksanen, Hanna M., Krupovic, Mart

“…This article is a summary of the activities of the ICTV’s Bacterial and Archaeal Viruses Subcommittee for the years 2018 and 2019. Highlights include the…”
Získať plný text