Suchergebnisse - "Chen, Andrew A."

Image harmonization: A review of statistical and deep learning methods for removing batch effects and evaluation metrics for effective harmonization von Hu, Fengling, Chen, Andrew A., Horng, Hannah, Bashyam, Vishnu, Davatzikos, Christos, Alexander-Bloch, Aaron, Li, Mingyao, Shou, Haochang, Satterthwaite, Theodore D., Yu, Meichen, Shinohara, Russell T.

“… •Batch effects introduce significant confounding in multi-batch neuroimaging data.•Removal of batch effects is critical for reproducibility and …”
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Mitigating site effects in covariance for machine learning in neuroimaging data von Chen, Andrew A., Beer, Joanne C., Tustison, Nicholas J., Cook, Philip A., Shinohara, Russell T., Shou, Haochang

“… To acquire larger samples for answering complex questions in neuroscience, researchers have increasingly turned to multi‐site neuroimaging studies. However, …”
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Privacy-preserving harmonization via distributed ComBat von Chen, Andrew A., Luo, Chongliang, Chen, Yong, Shinohara, Russell T., Shou, Haochang

“… Challenges in clinical data sharing and the need to protect data privacy have led to the development and popularization of methods that do not require directly …”
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Functional connectivity development along the sensorimotor-association axis enhances the cortical hierarchy von Luo, Audrey C., Sydnor, Valerie J., Pines, Adam, Larsen, Bart, Alexander-Bloch, Aaron F., Cieslak, Matthew, Covitz, Sydney, Chen, Andrew A., Esper, Nathalia Bianchini, Feczko, Eric, Franco, Alexandre R., Gur, Raquel E., Gur, Ruben C., Houghton, Audrey, Hu, Fengling, Keller, Arielle S., Kiar, Gregory, Mehta, Kahini, Salum, Giovanni A., Tapera, Tinashe, Xu, Ting, Zhao, Chenying, Salo, Taylor, Fair, Damien A., Shinohara, Russell T., Milham, Michael P., Satterthwaite, Theodore D.

“… Human cortical maturation has been posited to be organized along the sensorimotor-association axis, a hierarchical axis of brain organization that spans from …”
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Harmonizing functional connectivity reduces scanner effects in community detection von Chen, Andrew A., Srinivasan, Dhivya, Pomponio, Raymond, Fan, Yong, Nasrallah, Ilya M., Resnick, Susan M., Beason-Held, Lori L., Davatzikos, Christos, Satterthwaite, Theodore D., Bassett, Dani S., Shinohara, Russell T., Shou, Haochang

“… Community detection on graphs constructed from functional magnetic resonance imaging (fMRI) data has led to important insights into brain functional …”
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PARE: A framework for removal of confounding effects from any distance-based dimension reduction method von Chen, Andrew A., Clark, Kelly, Dewey, Blake E., DuVal, Anna, Pellegrini, Nicole, Nair, Govind, Jalkh, Youmna, Khalil, Samar, Zurawski, Jon, Calabresi, Peter A., Reich, Daniel S., Bakshi, Rohit, Shou, Haochang, Shinohara, Russell T.

“… Dimension reduction tools preserving similarity and graph structure such as t -SNE and UMAP can capture complex biological patterns in high-dimensional data …”
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Accelerated iTBS-Induced changes in resting-state functional connectivity correspond with cognitive improvement in amnestic MCI von Aghamoosa, Stephanie, Nolin, Sara A., Chen, Andrew A., Caulfield, Kevin A., Lopez, James, Rbeiz, Katrina, Fleischmann, Holly H., Horn, Olivia, Madden, Katrina, Antonucci, Michael, Revuelta, Gonzalo, McTeague, Lisa M., Benitez, Andreana

“… Published results of our Phase I safety and feasibility trial of accelerated intermittent theta burst stimulation (a-iTBS) in mild cognitive impairment (MCI) …”
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Immune aging in multiple sclerosis is characterized by abnormal CD4 T cell activation and increased frequencies of cytotoxic CD4 T cells with advancing age von Zuroff, Leah, Rezk, Ayman, Shinoda, Koji, Espinoza, Diego A., Elyahu, Yehezqel, Zhang, Bo, Chen, Andrew A., Shinohara, Russell T., Jacobs, Dina, Alcalay, Roy N., Tropea, Thomas F., Chen-Plotkin, Alice, Monsonego, Alon, Li, Rui, Bar-Or, Amit

“… Immunosenescence (ISC) describes age-related changes in immune-system composition and function. Multiple sclerosis (MS) is a lifelong inflammatory condition …”
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Robust Image Population Based Stain Color Normalization: How Many Reference Slides Are Enough? von Agraz, Jose L., Grenko, Caleb M., Chen, Andrew A., Viaene, Angela N., Nasrallah, MacLean D., Pati, Sarthak, Kurc, Tahsin, Saltz, Joel, Feldman, Michael D., Akbari, Hamed, Sharma, Parth, Shinohara, Russell T., Bakas, Spyridon

“… Histopathologic evaluation of Hematoxylin & Eosin (H&E) stained slides is essential for disease diagnosis, revealing tissue morphology, structure, and cellular …”
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Pharmacologic prophylaxis and risk factors for intraoperative floppy-iris syndrome in phacoemulsification performed by resident physicians von Chen, Andrew A, Kelly, John P, Bhandari, Anuja, Wu, Michael C

“… To determine the incidence of intraoperative floppy-iris syndrome (IFIS) in patients taking tamsulosin who had surgery by resident physicians, the effect of …”
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First-generation clinical dual-source photon-counting CT: ultra-low-dose quantitative spectral imaging von Liu, Leening P., Shapira, Nadav, Chen, Andrew A., Shinohara, Russell T., Sahbaee, Pooyan, Schnall, Mitchell, Litt, Harold I., Noël, Peter B.

“… Objective Evaluation of image characteristics at ultra-low radiation dose levels of a first-generation dual-source photon-counting computed tomography (PCCT) …”
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Quantitative regional associations between remodeling, modeling, and osteocyte apoptosis and density in rabbit tibial midshafts von Hedgecock, Nicole L., Hadi, Tamer, Chen, Andrew A., Curtiss, Shane B., Martin, R. Bruce, Hazelwood, Scott J.

“… Evidence suggests that osteocyte apoptosis is involved in the adaptive response of bone, although the specific role of osteocytes in the signaling mechanism is …”
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Generalizable Links Between Borderline Personality Traits and Functional Connectivity von Shafiei, Golia, Keller, Arielle S., Bertolero, Maxwell, Shanmugan, Sheila, Bassett, Dani S., Chen, Andrew A., Covitz, Sydney, Houghton, Audrey, Luo, Audrey, Mehta, Kahini, Salo, Taylor, Shinohara, Russell T., Fair, Damien, Hallquist, Michael N., Satterthwaite, Theodore D.

“… Symptoms of borderline personality disorder (BPD) often manifest during adolescence, but the underlying relationship between these debilitating symptoms and …”
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DeepComBat: A statistically motivated, hyperparameter‐robust, deep learning approach to harmonization of neuroimaging data von Hu, Fengling, Lucas, Alfredo, Chen, Andrew A., Coleman, Kyle, Horng, Hannah, Ng, Raymond W. S., Tustison, Nicholas J., Davis, Kathryn A., Shou, Haochang, Li, Mingyao, Shinohara, Russell T.

“… Neuroimaging data acquired using multiple scanners or protocols are increasingly available. However, such data exhibit technical artifacts across batches which …”
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ComBatLS: A Location‐ and Scale‐Preserving Method for Multi‐Site Image Harmonization von Gardner, Margaret, Shinohara, Russell T., Bethlehem, Richard A. I., Romero‐Garcia, Rafael, Warrier, Varun, Dorfschmidt, Lena, Shanmugan, Sheila, Thompson, Paul, Seidlitz, Jakob, Alexander‐Bloch, Aaron F., Chen, Andrew A.

“… ABSTRACT Recent study has leveraged massive datasets and advanced harmonization methods to construct normative models of neuroanatomical features and benchmark …”
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Subject‐Level Segmentation Precision Weights for Volumetric Studies Involving Label Fusion von Chen, Christina, Das, Sandhitsu R., Tisdall, M. Dylan, Hu, Fengling, Chen, Andrew A., Yushkevich, Paul A., Wolk, David A., Shinohara, Russell T.

“… ABSTRACT In neuroimaging research, volumetric data contribute valuable information for understanding brain changes during both healthy aging and pathological …”
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Biomechanics of the rabbit knee and ankle: Muscle, ligament, and joint contact force predictions von Grover, Dustin M., Chen, Andrew A., Hazelwood, Scott J.

“… Mathematical models of small animals that predict in vivo forces acting on the lower extremities are critical for studies of musculoskeletal biomechanics and …”
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Erratum: Optimizing and Evaluating Hand-drawing and Wet-spinning for Recombinant Spider Silk Fiber Production von Ghimire, Anupama, Batool, Hina, Evans, Sara, Rashid, Suad, Rainey, Donovan L., Chen, Andrew A. Y., Liu, Xiang-Qin, Rainey, Jan K.

“… This corrects the article 10.3791/68714 …”
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Optimizing and Evaluating Hand-drawing and Wet-spinning for Recombinant Spider Silk Fiber Production von Ghimire, Anupama, Batool, Hina, Evans, Sara, Rashid, Suad, Rainey, Donovan L., Chen, Andrew A. Y., Liu, Xiang-Qin, Rainey, Jan K.

“… Spider silks are renowned for their mechanical properties, with hallmark high strength, high extensibility, or a combination of these leading to high …”
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Reproducible Brain Charts: An open data resource for mapping brain development and its associations with mental health von Shafiei, Golia, Esper, Nathalia B, Hoffmann, Mauricio S, Ai, Lei, Chen, Andrew A, Cluce, Jon, Covitz, Sydney, Giavasis, Steven, Lane, Connor, Mehta, Kahini, Moore, Tyler M, Salo, Taylor, Tapera, Tinashe M, Calkins, Monica E, Colcombe, Stanley, Davatzikos, Christos, Gur, Raquel E, Gur, Ruben C, Pan, Pedro M, Jackowski, Andrea P, Rokem, Ariel, Rohde, Luis A, Shinohara, Russell T, Tottenham, Nim, Zuo, Xi-Nian, Cieslak, Matthew, Franco, Alexandre R, Kiar, Gregory, Salum, Giovanni A, Milham, Michael P, Satterthwaite, Theodore D

“… Mental disorders are increasingly understood as disorders of brain development. Large and heterogeneous samples are required to define generalizable links …”
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