Suchergebnisse - "CASP"

Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment von Mauri, Théo, Nadzirin, Nurul, Velankar, Sameer, Chaleil, Raphael A. G., Bates, Paul A., Kong, Ren, Liu, Bin, Yang, Guangbo, Liu, Ming, Shi, Hang, Lu, Xufeng, Chang, Shan, Roy, Raj S., Quadir, Farhan, Antoniak, Anna, Czaplewski, Cezary, Giełdoń, Artur, Kogut, Mateusz, Lipska, Agnieszka G., Liwo, Adam, Maszota‐Zieleniak, Martyna, Sieradzan, Adam K., Ślusarz, Rafał, Wesołowski, Patryk A., Zięba, Karolina, Del Carpio Muñoz, Carlos A., Ichiishi, Eiichiro, Harmalkar, Ameya, Gray, Jeffrey J., Ambrosetti, Francesco, Vargas Honorato, Rodrigo, Jandova, Zuzana, Jiménez‐García, Brian, Koukos, Panagiotis I., Van Keulen, Siri, Van Noort, Charlotte W., Réau, Manon, Roel‐Touris, Jorge, Kotelnikov, Sergei, Padhorny, Dzmitry, Porter, Kathryn A., Alekseenko, Andrey, Ignatov, Mikhail, Desta, Israel, Ashizawa, Ryota, Sun, Zhuyezi, Ghani, Usman, Hashemi, Nasser, Vajda, Sandor, Kozakov, Dima, Rosell, Mireia, Rodríguez‐Lumbreras, Luis A., Fernandez‐Recio, Juan, Karczynska, Agnieszka, Grudinin, Sergei, Yan, Yumeng, Li, Hao, Lin, Peicong, Huang, Sheng‐You, Christoffer, Charles, Terashi, Genki, Verburgt, Jacob, Sarkar, Daipayan, Aderinwale, Tunde, Wang, Xiao, Kihara, Daisuke, Nakamura, Tsukasa, Hanazono, Yuya, Gowthaman, Ragul, Guest, Johnathan D., Yin, Rui, Taherzadeh, Ghazaleh, Pierce, Brian G., Cao, Zhen, Cavallo, Luigi, Oliva, Romina, Sun, Yuanfei, Zhu, Shaowen, Shen, Yang, Park, Taeyong, Woo, Hyeonuk, Yang, Jinsol, Kwon, Sohee, Won, Jonghun, Seok, Chaok, Kiyota, Yasuomi, Kobayashi, Shinpei, Harada, Yoshiki, Takeda‐Shitaka, Mayuko, Kundrotas, Petras J., Vakser, Ilya A., Dapkūnas, Justas, Olechnovič, Kliment, Venclovas, Česlovas, Duan, Rui, Qiu, Liming, Xu, Xianjin, Zhang, Shuang, Zou, Xiaoqin, Wodak, Shoshana J.

“… We present the results for CAPRI Round 50, the fourth joint CASP‐CAPRI protein assembly prediction challenge. The Round comprised a total of twelve targets, …”
Volltext

Impact of AlphaFold on Structure Prediction of Protein Complexes: The CASP15-CAPRI Experiment von Marc Lensink, Nessim Raouraoua, Paul Bates, Marco Giulini, Rodrigo Vargas Honorato, Charlotte van Noort, João Teixeira, Alexandre M.J.J. Bonvin, Ren Kong, Hang Shi, Xufeng Lu, Shan Chang, Jian Liu, Zhiye Guo, Xiao Chen, Alex Morehead, Raj Roy, Tianqi Wu, Nabin Giri, Farhan Quadir, Chen Chen, Jianlin Cheng, Carlos Del Carpio, Eichiro Ichiishi, Lee-Shin Chu, Sam Canner, Rituparna Smanta, Jeffrey Gray, Hao Li, Peicong Lin, Jiahua He, Huanyu Tao, Shengyou Huang, Jorge Roel, Brian Jimenez-Garcia, Charles Christoffer, Anika Jain J, Tsukasa Nakamura, Genki Terashi, Jacob Verburgt, Yuanyuan Zhang, Zicong Zhang, Hayato Fujuta, Masakazu Sekijima, Daisuke Kihara, Omeir Khan, Sergei Kotelnikov, Usman Ghani, Dzmitry Padhorny, Dmitri Beglov, Sandor Vajda, Dima Kozakov, Surendra Negi S, Tiziana Ricciardelli, Didier Barradas-Bautista, Zhen Cao, Mohit Chawla, Luigi Cavallo, Rui Yin, Melyssa Cheung, Jessica Lee, Brian Pierce, Ben Shor, Tomer Cohen, Dina Schneidman-Duhovny, Shaowen Zhu, Rujie Yin, Yuanfei Sun, Yang Shen, Martyna Maszota-Zieleniak, Krzysztof Bojarski K, Emilia Lubecka, Mateusz Marcisz, Annemarie Danielsson, Lukasz Dziadek, Margrethe Gaardlos, Artur Giełdoń, Sergey Samsonov, Rafal Slusarz, Karolina Zieba, Adam Sieradzan, Cezary Czaplewski, Shinpei Kobayashi, Yuta Miyakawa, Yasuomi Kiyota, Mayuko Takeda-Shitaka, Kliment Olechnovič, Lukas Valančauskas, Justas Dapkūnas, Ceslovas Venclovas, Björn Wallner, Lin Yang, Shuai Guo, Shenda Jiang, Rui Duan, Liming Qiu, Xianjin Xu, Xiaoqin Zou, Sameer Velankar, Shoshana Wodak J

Volltext

Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment von Lensink, Marc F., Velankar, Sameer, Kryshtafovych, Andriy, Huang, Shen-You, Schneidman-Duhovny, Dina, Segura, Joan, Fernandez-Fuentes, Narcis, Viswanath, Shruthi, Elber, Ron, Grudinin, Sergei, Popov, Petr, Neveu, Emilie, Lee, Hasup, Baek, Minkyung, Park, Sangwoo, Heo, Lim, Rie Lee, Gyu, Seok, Chaok, Qin, Sanbo, Zhou, Huan-Xiang, Ritchie, David W., Maigret, Bernard, Devignes, Marie-Dominique, Ghoorah, Anisah, Torchala, Mieczyslaw, Chaleil, Raphaël A.G., Bates, Paul A., Ben-Zeev, Efrat, Eisenstein, Miriam, Negi, Surendra S., Weng, Zhiping, Vreven, Thom, Pierce, Brian G., Borrman, Tyler M., Yu, Jinchao, Ochsenbein, Françoise, Guerois, Raphaël, Vangone, Anna, Rodrigues, João P.G.L.M., van Zundert, Gydo, Nellen, Mehdi, Xue, Li, Karaca, Ezgi, Melquiond, Adrien S.J., Visscher, Koen, Kastritis, Panagiotis L., Bonvin, Alexandre M.J.J., Xu, Xianjin, Qiu, Liming, Yan, Chengfei, Li, Jilong, Ma, Zhiwei, Cheng, Jianlin, Zou, Xiaoqin, Shen, Yang, Peterson, Lenna X., Kim, Hyung-Rae, Roy, Amit, Han, Xusi, Esquivel-Rodriguez, Juan, Kihara, Daisuke, Yu, Xiaofeng, Bruce, Neil J., Fuller, Jonathan C., Wade, Rebecca C., Anishchenko, Ivan, Kundrotas, Petras J., Vakser, Ilya A., Imai, Kenichiro, Yamada, Kazunori, Oda, Toshiyuki, Nakamura, Tsukasa, Tomii, Kentaro, Pallara, Chiara, Romero-Durana, Miguel, Jiménez-García, Brian, Moal, Iain H., Férnandez-Recio, Juan, Joung, Jong Young, Kim, Jong Yun, Joo, Keehyoung, Lee, Jooyoung, Kozakov, Dima, Vajda, Sandor, Mottarella, Scott, Hall, David R., Beglov, Dmitri, Mamonov, Artem, Xia, Bing, Bohnuud, Tanggis, Del Carpio, Carlos A., Ichiishi, Eichiro, Marze, Nicholas, Kuroda, Daisuke, Gray, Jeffrey J., Chermak, Edrisse, Cavallo, Luigi, Oliva, Romina, Tovchigrechko, Andrey, Wodak, Shoshana J.

“… ABSTRACT We present the results for CAPRI Round 30, the first joint CASP‐CAPRI experiment, which brought together experts from the protein structure prediction …”
Volltext

Critical assessment of methods of protein structure prediction (CASP)—Round XIV von Kryshtafovych, Andriy, Schwede, Torsten, Topf, Maya, Fidelis, Krzysztof, Moult, John

“… Critical assessment of structure prediction (CASP) is a community experiment to advance methods of computing three‐dimensional protein structure from amino …”
Volltext

Applying and improving AlphaFold at CASP14 von Jumper, John, Evans, Richard, Pritzel, Alexander, Green, Tim, Figurnov, Michael, Ronneberger, Olaf, Tunyasuvunakool, Kathryn, Bates, Russ, Žídek, Augustin, Potapenko, Anna, Bridgland, Alex, Meyer, Clemens, Kohl, Simon A. A., Ballard, Andrew J., Cowie, Andrew, Romera‐Paredes, Bernardino, Nikolov, Stanislav, Jain, Rishub, Adler, Jonas, Back, Trevor, Petersen, Stig, Reiman, David, Clancy, Ellen, Zielinski, Michal, Steinegger, Martin, Pacholska, Michalina, Berghammer, Tamas, Silver, David, Vinyals, Oriol, Senior, Andrew W., Kavukcuoglu, Koray, Kohli, Pushmeet, Hassabis, Demis

“… We describe the operation and improvement of AlphaFold, the system that was entered by the team AlphaFold2 to the “human” category in the 14th Critical …”
Volltext

Critical assessment of methods of protein structure prediction (CASP)—Round XIII von Kryshtafovych, Andriy, Schwede, Torsten, Topf, Maya, Fidelis, Krzysztof, Moult, John

“… CASP (critical assessment of structure prediction) assesses the state of the art in modeling protein structure from amino acid sequence. The most recent …”
Volltext

Target highlights in CASP13: Experimental target structures through the eyes of their authors von Lepore, Rosalba, Kryshtafovych, Andriy, Alahuhta, Markus, Veraszto, Harshul A., Bomble, Yannick J., Bufton, Joshua C., Bullock, Alex N., Caba, Cody, Cao, Hongnan, Davies, Owen R., Desfosses, Ambroise, Dunne, Matthew, Fidelis, Krzysztof, Goulding, Celia W., Gurusaran, Manickam, Gutsche, Irina, Harding, Christopher J., Hartmann, Marcus D., Hayes, Christopher S., Joachimiak, Andrzej, Leiman, Petr G., Loppnau, Peter, Lovering, Andrew L., Lunin, Vladimir V., Michalska, Karolina, Mir‐Sanchis, Ignacio, Mitra, AK, Moult, John, Phillips Jr, George N., Pinkas, Daniel M., Rice, Phoebe A., Tong, Yufeng, Topf, Maya, Walton, Jonathan D., Schwede, Torsten

“… The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the …”
Volltext

Template-based modeling and free modeling by I-TASSER in CASP7 von Zhang, Yang

Volltext

Protein structure prediction using multiple deep neural networks in the 13th Critical Assessment of Protein Structure Prediction (CASP13) von Senior, Andrew W., Evans, Richard, Jumper, John, Kirkpatrick, James, Sifre, Laurent, Green, Tim, Qin, Chongli, Žídek, Augustin, Nelson, Alexander W. R., Bridgland, Alex, Penedones, Hugo, Petersen, Stig, Simonyan, Karen, Crossan, Steve, Kohli, Pushmeet, Jones, David T., Silver, David, Kavukcuoglu, Koray, Hassabis, Demis

“… We describe AlphaFold, the protein structure prediction system that was entered by the group A7D in CASP13. Submissions were made by three free‐modeling (FM) …”
Volltext

DAUnet: A U-shaped network combining deep supervision and attention for brain tumor segmentation von Feng, Yan, Cao, Yuan, An, Dianlong, Liu, Panpan, Liao, Xingyu, Yu, Bin

Volltext

Critical assessment of methods of protein structure prediction (CASP)—Round XV von Kryshtafovych, Andriy, Schwede, Torsten, Topf, Maya, Fidelis, Krzysztof, Moult, John

“… Computing protein structure from amino acid sequence information has been a long‐standing grand challenge. Critical assessment of structure prediction (CASP) …”
Volltext

Critical assessment of methods of protein structure prediction (CASP)—Round XII von Moult, John, Fidelis, Krzysztof, Kryshtafovych, Andriy, Schwede, Torsten, Tramontano, Anna

“… This article reports the outcome of the 12th round of Critical Assessment of Structure Prediction (CASP12), held in 2016. CASP is a community experiment to …”
Volltext

Modeling SARS-CoV-2 proteins in the CASP-commons experiment von Kryshtafovych, Andriy, Moult, John, Billings, Wendy M., Della Corte, Dennis, Fidelis, Krzysztof, Kwon, Sohee, Olechnovič, Kliment, Seok, Chaok, Venclovas, Česlovas, Won, Jonghun

“… Critical Assessment of Structure Prediction (CASP) is an organization aimed at advancing the state of the art in computing protein structure from sequence. In …”
Volltext

Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment von Brysbaert, Guillaume, Raouraoua, Nessim, Bates, Paul A., Giulini, Marco, Honorato, Rodrigo V., Noort, Charlotte, Teixeira, Joao M. C., Bonvin, Alexandre M. J. J., Kong, Ren, Shi, Hang, Lu, Xufeng, Chang, Shan, Guo, Zhiye, Chen, Xiao, Roy, Raj S., Wu, Tianqi, Giri, Nabin, Quadir, Farhan, Chen, Chen, Cheng, Jianlin, Del Carpio, Carlos A., Ichiishi, Eichiro, Rodriguez‐Lumbreras, Luis A., Fernandez‐Recio, Juan, Harmalkar, Ameya, Chu, Lee‐Shin, Canner, Sam, Smanta, Rituparna, Gray, Jeffrey J., Li, Hao, Lin, Peicong, He, Jiahua, Tao, Huanyu, Huang, Sheng‐You, Roel‐Touris, Jorge, Jimenez‐Garcia, Brian, Christoffer, Charles W., Jain, Anika J., Kagaya, Yuki, Kannan, Harini, Nakamura, Tsukasa, Terashi, Genki, Zhang, Yuanyuan, Zhang, Zicong, Fujuta, Hayato, Sekijima, Masakazu, Kihara, Daisuke, Khan, Omeir, Kotelnikov, Sergei, Ghani, Usman, Beglov, Dmitri, Vajda, Sandor, Negi, Surendra S., Ricciardelli, Tiziana, Barradas‐Bautista, Didier, Cao, Zhen, Chawla, Mohit, Cavallo, Luigi, Yin, Rui, Guest, Johnathan D., Lee, Jessica, Pierce, Brian G., Shor, Ben, Cohen, Tomer, Halfon, Matan, Schneidman‐Duhovny, Dina, Zhu, Shaowen, Sun, Yuanfei, Shen, Yang, Maszota‐Zieleniak, Martyna, Bojarski, Krzysztof K., Lubecka, Emilia A., Marcisz, Mateusz, Danielsson, Annemarie, Dziadek, Lukasz, Gieldon, Artur, Liwo, Adam, Samsonov, Sergey A., Slusarz, Rafal, Zieba, Karolina, Sieradzan, Adam K., Czaplewski, Cezary, Kobayashi, Shinpei, Miyakawa, Yuta, Kiyota, Yasuomi, Takeda‐Shitaka, Mayuko, Olechnovic, Kliment, Valancauskas, Lukas, Venclovas, Ceslovas, Yang, Lin, Hou, Chengyu, He, Xiaodong, Guo, Shuai, Jiang, Shenda, Ma, Xiaoliang, Duan, Rui, Xu, Xianjin, Zou, Xiaoqin, Velankar, Sameer, Wodak, Shoshana J.

“… We present the results for CAPRI Round 54, the 5th joint CASP‐CAPRI protein assembly prediction challenge. The Round offered 37 targets, including 14 …”
Volltext

Longitudinal Analysis of the Relationship Between Purposes of Internet Use and Well-being Among Older Adults von Szabo, Agnes, Allen, Joanne, Stephens, Christine, Alpass, Fiona

“… There is support for the role of Internet use in promoting well-being among older people. However, there are also contradictory findings which may be …”
Weitere Angaben

Critical Assessment of Methods for Predicting the 3D Structure of Proteins and Protein Complexes von Wodak, Shoshana J, Vajda, Sandor, Lensink, Marc F, Kozakov, Dima, Bates, Paul A

“… Advances in a scientific discipline are often measured by small, incremental steps. In this review, we report on two intertwined disciplines in the protein …”
Weitere Angaben

Assessment of contact predictions in CASP12: Co‐evolution and deep learning coming of age von Schaarschmidt, Joerg, Monastyrskyy, Bohdan, Kryshtafovych, Andriy, Bonvin, Alexandre M.J.J.

“… Following up on the encouraging results of residue‐residue contact prediction in the CASP11 experiment, we present the analysis of predictions submitted for …”
Volltext

Computer‐Aided Synthesis Planning (CASP) and Machine Learning: Optimizing Chemical Reaction Conditions von Han, Yu, Deng, Mingjing, Liu, Ke, Chen, Jia, Wang, Yuting, Xu, Yu‐Ning, Dian, Longyang

“… Computer‐aided synthesis planning (CASP) has garnered increasing attention in light of recent advancements in machine learning models. While the focus is on …”
Volltext

Quality of Life and Participation of Children With Visual Impairment: Comparison With Population Reference Scores von Elsman, Ellen B. M., Koel, Mitchel, van Nispen, Ruth M. A., van Rens, Ger H. M. B.

“… The purpose of this study was to investigate quality of life and participation in children aged 3 to 17 years with visual impairment (VI) compared to reference …”
Volltext

Modeling SARS‐CoV‐2 proteins in the CASP‐commons experiment von Kryshtafovych, Andriy, Moult, John, Billings, Wendy M., Della Corte, Dennis, Fidelis, Krzysztof, Kwon, Sohee, Olechnovič, Kliment, Seok, Chaok, Venclovas, Česlovas, Won, Jonghun

“… Critical Assessment of Structure Prediction (CASP) is an organization aimed at advancing the state of the art in computing protein structure from sequence. In …”
Volltext