Výsledky vyhľadávania - "Brister, J Rodney"

The Sequence Read Archive: a decade more of explosive growth Autor Katz, Kenneth, Shutov, Oleg, Lapoint, Richard, Kimelman, Michael, Brister, J Rodney, O’Sullivan, Christopher

“…Abstract The Sequence Read Archive (SRA, https://www.ncbi.nlm.nih.gov/sra/) stores raw sequencing data and alignment information to enhance reproducibility and…”
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How to Name and Classify Your Phage: An Informal Guide Autor Adriaenssens, Evelien, Brister, J. Rodney

“…With this informal guide, we try to assist both new and experienced phage researchers through two important stages that follow phage discovery; that is, naming…”
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks Autor Bin Jang, Ho, Bolduc, Benjamin, Zablocki, Olivier, Kuhn, Jens H, Roux, Simon, Adriaenssens, Evelien M, Brister, J Rodney, Kropinski, Andrew M, Krupovic, Mart, Lavigne, Rob, Turner, Dann, Sullivan, Matthew B

“…Microbiomes from every environment contain a myriad of uncultivated archaeal and bacterial viruses, but studying these viruses is hampered by the lack of a…”
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Database resources of the national center for biotechnology information Autor Sayers, Eric W, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Chan, Jessica, Comeau, Donald C, Connor, Ryan, Funk, Kathryn, Kelly, Chris, Kim, Sunghwan, Madej, Tom, Marchler-Bauer, Aron, Lanczycki, Christopher, Lathrop, Stacy, Lu, Zhiyong, Thibaud-Nissen, Francoise, Murphy, Terence, Phan, Lon, Skripchenko, Yuri, Tse, Tony, Wang, Jiyao, Williams, Rebecca, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

“…Abstract The National Center for Biotechnology Information (NCBI) produces a variety of online information resources for biology, including the GenBank®…”
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Database resources of the National Center for Biotechnology Information Autor Sayers, Eric W, Agarwala, Richa, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Clark, Karen, Connor, Ryan, Fiorini, Nicolas, Funk, Kathryn, Hefferon, Timothy, Holmes, J Bradley, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, Marchler-Bauer, Aron, Phan, Lon, Schneider, Valerie A, Schoch, Conrad L, Pruitt, Kim D, Ostell, James

“…Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the…”
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Virus Variation Resource – improved response to emergent viral outbreaks Autor Hatcher, Eneida L., Zhdanov, Sergey A., Bao, Yiming, Blinkova, Olga, Nawrocki, Eric P., Ostapchuck, Yuri, Schäffer, Alejandro A., Brister, J. Rodney

“…The Virus Variation Resource is a value-added viral sequence data resource hosted by the National Center for Biotechnology Information. The resource is located…”
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Database resources of the National Center for Biotechnology Information Autor Sayers, Eric W, Beck, Jeff, Bolton, Evan E, Brister, J Rodney, Chan, Jessica, Comeau, Donald C, Connor, Ryan, DiCuccio, Michael, Farrell, Catherine M, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hatcher, Eneida, Hoeppner, Marilu, Kane, Megan, Kannan, Sivakumar, Katz, Kenneth S, Kelly, Christopher, Klimke, William, Kim, Sunghwan, Kimchi, Avi, Landrum, Melissa, Lathrop, Stacy, Lu, Zhiyong, Malheiro, Adriana, Marchler-Bauer, Aron, Murphy, Terence D, Phan, Lon, Prasad, Arjun B, Pujar, Shashikant, Sawyer, Amanda, Schmieder, Erin, Schneider, Valerie A, Schoch, Conrad L, Sharma, Shobha, Thibaud-Nissen, Françoise, Trawick, Barton W, Venkatapathi, Thilakam, Wang, Jiyao, Pruitt, Kim D, Sherry, Stephen T

“…The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence…”
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Database resources of the National Center for Biotechnology Information in 2025 Autor Sayers, Eric W, Beck, Jeffrey, Bolton, Evan E, Brister, J Rodney, Chan, Jessica, Connor, Ryan, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hoffman, Jinna, Kannan, Sivakumar, Kelly, Christopher, Klimke, William, Kim, Sunghwan, Lathrop, Stacy, Marchler-Bauer, Aron, Murphy, Terence D, O’Sullivan, Chris, Schmieder, Erin, Skripchenko, Yuriy, Stine, Adam, Thibaud-Nissen, Francoise, Wang, Jiyao, Ye, Jian, Zellers, Erin, Schneider, Valerie A, Pruitt, Kim D

“…The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence…”
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Database resources of the National Center for Biotechnology Information in 2023 Autor Sayers, Eric W, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Chan, Jessica, Comeau, Donald C, Farrell, Catherine M, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hatcher, Eneida, Kannan, Sivakumar, Kelly, Christopher, Kim, Sunghwan, Klimke, William, Landrum, Melissa J, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, Malheiro, Adriana, Marchler-Bauer, Aron, Murphy, Terence D, Phan, Lon, Pujar, Shashikant, Rangwala, Sanjida H, Schneider, Valerie A, Tse, Tony, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

“…The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence…”
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Database resources of the National Center for Biotechnology Information Autor Sayers, Eric W, Beck, Jeff, Brister, J Rodney, Bolton, Evan E, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Ketter, Anne, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Kuznetsov, Anatoliy, Lathrop, Stacy, Lu, Zhiyong, McGarvey, Kelly, Madden, Thomas L, Murphy, Terence D, O’Leary, Nuala, Phan, Lon, Schneider, Valerie A, Thibaud-Nissen, Françoise, Trawick, Bart W, Pruitt, Kim D, Ostell, James

“…Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the…”
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STAT: a fast, scalable, MinHash-based k-mer tool to assess Sequence Read Archive next-generation sequence submissions Autor Katz, Kenneth S., Shutov, Oleg, Lapoint, Richard, Kimelman, Michael, Brister, J. Rodney, O’Sullivan, Christopher

“…Sequence Read Archive submissions to the National Center for Biotechnology Information often lack useful metadata, which limits the utility of these…”
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NCBI RefSeq: reference sequence standards through 25 years of curation and annotation Autor Goldfarb, Tamara, Kodali, Vamsi K, Pujar, Shashikant, Brover, Vyacheslav, Robbertse, Barbara, Farrell, Catherine M, Oh, Dong-Ha, Astashyn, Alexander, Ermolaeva, Olga, Haddad, Diana, Hlavina, Wratko, Hoffman, Jinna, Jackson, John D, Joardar, Vinita S, Kristensen, David, Masterson, Patrick, McGarvey, Kelly M, McVeigh, Richard, Mozes, Eyal, Murphy, Michael R, Schafer, Susan S, Souvorov, Alexander, Spurrier, Brett, Strope, Pooja K, Sun, Hanzhen, Vatsan, Anjana R, Wallin, Craig, Webb, David, Brister, J Rodney, Hatcher, Eneida, Kimchi, Avi, Klimke, William, Marchler-Bauer, Aron, Pruitt, Kim D, Thibaud-Nissen, Françoise, Murphy, Terence D

“…Reference sequences and annotations serve as the foundation for many lines of research today, from organism and sequence identification to providing a core…”
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VADR: validation and annotation of virus sequence submissions to GenBank Autor Schäffer, Alejandro A., Hatcher, Eneida L., Yankie, Linda, Shonkwiler, Lara, Brister, J. Rodney, Karsch-Mizrachi, Ilene, Nawrocki, Eric P.

“…Background GenBank contains over 3 million viral sequences. The National Center for Biotechnology Information (NCBI) previously made available a tool for…”
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Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages Autor Barylski, Jakub, Enault, François, Dutilh, Bas E, Schuller, Margo BP, Edwards, Robert A, Gillis, Annika, Klumpp, Jochen, Knezevic, Petar, Krupovic, Mart, Kuhn, Jens H, Lavigne, Rob, Oksanen, Hanna M, Sullivan, Matthew B, Jang, Ho Bin, Simmonds, Peter, Aiewsakun, Pakorn, Wittmann, Johannes, Tolstoy, Igor, Brister, J Rodney, Kropinski, Andrew M, Adriaenssens, Evelien M

“…Abstract Tailed bacteriophages are the most abundant and diverse viruses in the world, with genome sizes ranging from 10 kbp to over 500 kbp. Yet, due to…”
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Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG) Autor Matthijnssens, Jelle, Ciarlet, Max, McDonald, Sarah M., Attoui, Houssam, Bányai, Krisztián, Brister, J. Rodney, Buesa, Javier, Esona, Mathew D., Estes, Mary K., Gentsch, Jon R., Iturriza-Gómara, Miren, Johne, Reimar, Kirkwood, Carl D., Martella, Vito, Mertens, Peter P. C., Nakagomi, Osamu, Parreño, Viviana, Rahman, Mustafizur, Ruggeri, Franco M., Saif, Linda J., Santos, Norma, Steyer, Andrej, Taniguchi, Koki, Patton, John T., Desselberger, Ulrich, Van Ranst, Marc

“…In April 2008, a nucleotide-sequence-based, complete genome classification system was developed for group A rotaviruses (RVs). This system assigns a specific…”
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Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee Autor Adriaenssens, Evelien M., Wittmann, Johannes, Kuhn, Jens H., Turner, Dann, Sullivan, Matthew B., Dutilh, Bas E., Jang, Ho Bin, van Zyl, Leonardo J., Klumpp, Jochen, Lobocka, Malgorzata, Moreno Switt, Andrea I., Rumnieks, Janis, Edwards, Robert A., Uchiyama, Jumpei, Alfenas-Zerbini, Poliane, Petty, Nicola K., Kropinski, Andrew M., Barylski, Jakub, Gillis, Annika, Clokie, Martha R. C., Prangishvili, David, Lavigne, Rob, Aziz, Ramy Karam, Duffy, Siobain, Krupovic, Mart, Poranen, Minna M., Knezevic, Petar, Enault, Francois, Tong, Yigang, Oksanen, Hanna M., Rodney Brister, J.

“…The prokaryotic virus community is represented at the International Committee on Taxonomy of Viruses (ICTV) by the Bacterial and Archaeal Viruses Subcommittee…”
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Perspective on taxonomic classification of uncultivated viruses Autor Dutilh, Bas E, Varsani, Arvind, Tong, Yigang, Simmonds, Peter, Sabanadzovic, Sead, Rubino, Luisa, Roux, Simon, Muñoz, Alejandro Reyes, Lood, Cédric, Lefkowitz, Elliot J, Kuhn, Jens H, Krupovic, Mart, Edwards, Robert A, Brister, J Rodney, Adriaenssens, Evelien M, Sullivan, Matthew B

“…[Display omitted] Historically, virus taxonomy has been limited to describing viruses that were readily cultivated in the laboratory or emerging in natural…”
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Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level Autor Salimi, Vahid, Viegas, Mariana, Trento, Alfonsina, Agoti, Charles N., Anderson, Larry J., Avadhanula, Vasanthi, Bahl, Justin, Bont, Louis, Brister, J. Rodney, Cane, Patricia A., Galiano, Mónica, Graham, Barney S., Hatcher, Eneida L., Hellferscee, Orienka, Henke, David M., Hirve, Siddhivinayak, Jackson, Sandra, Keyaerts, Els, Kragten-Tabatabaie, Leyla, Lindstrom, Stephen, Nauwelaers, Inne, Nokes, D. James, Openshaw, Peter J., Peret, Teresa C., Piedra, Pedro A., Ramaekers, Kaat, Rector, Annabel, Trovão, Nídia Sequeira, von Gottberg, Anne, Zambon, Maria, Zhang, Wenqing, Williams, Thomas C., Barr, Ian G., Buchholz, Ursula J.

“…Human respiratory syncytial virus (HRSV) is the leading viral cause of serious pediatric respiratory disease, and lifelong reinfections are common. Its 2 major…”
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Initiation of bacteriophage T4 DNA replication and replication fork dynamics: a review in the Virology Journal series on bacteriophage T4 and its relatives Autor Kreuzer, Kenneth N, Brister, J Rodney

“…Bacteriophage T4 initiates DNA replication from specialized structures that form in its genome. Immediately after infection, RNA-DNA hybrids (R-loops) occur on…”
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The Phylogeny and Pathogenesis of Sacbrood Virus (SBV) Infection in European Honey Bees, Apis mellifera Autor Li, Jianghong, Wang, Tingyun, Evans, Jay, Rose, Robyn, Zhao, Yazhou, Li, Zhiguo, Li, Jilian, Huang, Shaokang, Heerman, Matthew, Rodríguez-García, Cristina, Banmeke, Olubukola, Brister, J., Hatcher, Eneida, Cao, Lianfei, Hamilton, Michele, Chen, Yanping

“…RNA viruses that contain single-stranded RNA genomes of positive sense make up the largest group of pathogens infecting honey bees. Sacbrood virus (SBV) is one…”
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