Výsledky vyhledávání - "Bioinformatics workflows"

From Identification to Insight: Making Full Use of the Diagnostic Potential of MS/MS Proteotyping in Clinical Microbiology Using Efficient Bioinformatics Autor Muth, Thilo, Karlsson, Roger, Yu, Yi-Kuo, Alves, Gelio

“…Accurate and rapid pathogen identification is critical for modern diagnostics, driving the need for technologies that combine speed, specificity, and…”
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Computational Systems Biology Methods for Cross‐Disease Comparison of Omics Data Autor Svinin, Gleb, Loo, Rebecca Ting Jiin, Soudy, Mohamed, Nasta, Francesco, Le Bars, Sophie, Glaab, Enrico

“…ABSTRACT Complex diseases often share genetic susceptibility factors, molecular pathways, and pathological mechanisms. Understanding these commonalities…”
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Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource Autor Kelliher, Julia M., Xu, Yan, Flynn, Mark C., Babinski, Michal, Canon, Shane, Cavanna, Eric, Clum, Alicia, Corilo, Yuri E., Fujimoto, Grant, Giberson, Cameron, Johnson, Leah Y.D., Li, Kaitlyn J., Li, Po-E, Li, Valerie, Lo, Chien-Chi, Lynch, Wendi, Piehowski, Paul, Prime, Kaelan, Purvine, Samuel, Rodriguez, Francisca, Roux, Simon, Shakya, Migun, Smith, Montana, Sarrafan, Setareh, Cholia, Shreyas, McCue, Lee Ann, Mungall, Chris, Hu, Bin, Eloe-Fadrosh, Emiley A., Chain, Patrick S.G.

“…Accessible and easy-to-use standardized bioinformatics workflows are necessary to advance microbiome research from observational studies to large-scale,…”
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Building flexible and robust analysis frameworks for molecular subtyping of cancers Autor Pedersen, Christina Bligaard, Campos, Benito, Rene, Lasse, Wegener, Helene Scheel, Krishnan, Neeraja M., Panda, Binay, Vitting‐Seerup, Kristoffer, Rossing, Maria, Bagger, Frederik Otzen, Olsen, Lars Rønn

“…Molecular subtyping is essential to infer tumor aggressiveness and predict prognosis. In practice, tumor profiling requires in‐depth knowledge of…”
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Knowledge-Engineered Multi-Cloud Resource Brokering for Application Workflow Optimization Autor Pandey, Ashish, Calyam, Prasad, Lyu, Zhen, Wang, Songjie, Chemodanov, Dmitrii, Joshi, Trupti

“…Data-intensive application workflows benefit by leveraging cloud services to decrease execution times and increase data sharing. Cloud service providers (CSPs)…”
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Building Containerized Workflows Using the BioDepot-Workflow-Builder Autor Hung, Ling-Hong, Hu, Jiaming, Meiss, Trevor, Ingersoll, Alyssa, Lloyd, Wes, Kristiyanto, Daniel, Xiong, Yuguang, Sobie, Eric, Yeung, Ka Yee

“…We present the BioDepot-workflow-builder (Bwb), a software tool that allows users to create and execute reproducible bioinformatics workflows using a…”
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A (fire)cloud-based DNA methylation data preprocessing and quality control platform Autor Kangeyan, Divy, Dunford, Andrew, Iyer, Sowmya, Stewart, Chip, Hanna, Megan, Getz, Gad, Aryee, Martin J.

“…Background Bisulfite sequencing allows base-pair resolution profiling of DNA methylation and has recently been adapted for use in single-cells. Analyzing these…”
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Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms Autor Lord, Etienne, Diallo, Abdoulaye Baniré, Makarenkov, Vladimir

“…Background Workflows, or computational pipelines, consisting of collections of multiple linked tasks are becoming more and more popular in many scientific…”
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Bioinformatics Workflows With NoSQL Database in Cloud Computing Autor Wercelens, Polyane, da Silva, Waldeyr, Hondo, Fernanda, Castro, Klayton, Walter, Maria Emília, Araújo, Aletéia, Lifschitz, Sergio, Holanda, Maristela

“…Scientific workflows can be understood as arrangements of managed activities executed by different processing entities. It is a regular Bioinformatics approach…”
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A History-Based Resource Manager for Genome Analysis Workflows Applications on Clusters with Heterogeneous Nodes Autor Badosa, Ferran, Espinosa, Antonio, Acevedo, Cesar, Vera, Gonzalo, Ripoll, Ana

“…Bioinformatics workflows require large amounts of resources and are commonly executed in clusters. Determining the adequate amount of resources for…”
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Evaluating Grasp-based cloud dimensioning for comparative genomics: A practical approach Autor Coutinho, Rafaelli, Drummond, Lucia, Frota, Yuri, de Oliveira, Daniel, Ocana, Kary

“…Cloud computing establishes a new computing model where a wide range of computing resources are provided to several types of users. Especially for…”
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Challenges of Large-Scale Biomedical Workflows on the Cloud -- A Case Study on the Need for Reproducibility of Results Autor Kanwal, Sehrish, Lonie, Andrew, Sinnott, Richard O., Anderson, Charlotte

“…Computational bioinformatics workflows are extensively used to analyse genomics data. With the unprecedented advancements in genomic sequence technology and…”
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Resource Prediction Service for Efficient Execution of Bioinformatics Workflows in Federated Cloud with Machine Learning Autor Sobrinho, Matheus, Rosa, Michel, Silva, Waldeyr, Araujo, Aleteia

“…Cloud federation emerged to extend the resources available between different interconnected cloud providers for transparent and unlimited availability to the…”
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OnTimeURB: Multi-Cloud Resource Brokering for Bioinformatics Workflows Autor Pandey, Ashish, Lyu, Zhen, Joshi, Trupti, Calyam, Prasad

“…Scientific workflows due to their data and memory intensive requirements are among the prime applications which benefit by leveraging cloud computing. However,…”
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Using BioDepot-workflow-builder to Access Public Databases in a Containerized Environment Autor Scott, Christin, Hung, Ling-Hong, Lloyd, Wes, Yeung, Ka Yee

“…Modern day analyses of biomedical data typically involves a series of computational tasks called workflows. Each of these modules could be written by different…”
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An ontology-based framework for bioinformatics workflows Autor Digiampietri, Luciano A, Perez-Alcazar, Jose de J, Medeiros, Claudia Bauzer

“…The proliferation of bioinformatics activities brings new challenges - how to understand and organise these resources, how to exchange and reuse successful…”
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From Bio-jETI Process Models to Native Code Autor Lamprecht, A.-L., Margaria, T., Steffen, B.

“…Bio-jETI is a framework for model-based, graphical development and execution of bioinformatics analysis processes. With the GeneSys code generation framework…”
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Breaking Boundaries in Histone Modification MS-Based Detection: A Tailored Search Strategy for Unrestricted Identification of Novel Epigenetic Marks Autor Vai, Alessandro, Noberini, Roberta, Graziadei, Andrea, Polasky, Daniel A., Yu, Fengchao, Nesvizhskii, Alexey I., Bonaldi, Tiziana

“…Histone post-translational modifications (PTMs) play a crucial role in regulating gene expression and maintaining DNA integrity, and their aberrations are…”
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UTAP: User-friendly Transcriptome Analysis Pipeline Autor Kohen, Refael, Barlev, Jonathan, Hornung, Gil, Stelzer, Gil, Feldmesser, Ester, Kogan, Kiril, Safran, Marilyn, Leshkowitz, Dena

“…Background RNA-Seq technology is routinely used to characterize the transcriptome, and to detect gene expression differences among cell types, genotypes and…”
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MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing Autor Kalari, Krishna R, Nair, Asha A, Bhavsar, Jaysheel D, O’Brien, Daniel R, Davila, Jaime I, Bockol, Matthew A, Nie, Jinfu, Tang, Xiaojia, Baheti, Saurabh, Doughty, Jay B, Middha, Sumit, Sicotte, Hugues, Thompson, Aubrey E, Asmann, Yan W, Kocher, Jean-Pierre A

“…Background Although the costs of next generation sequencing technology have decreased over the past years, there is still a lack of simple-to-use applications,…”
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