Search Results - "APPLICATION PROGRAMMING INTERFACE"

TimeTree 5: An Expanded Resource for Species Divergence Times by Kumar, Sudhir, Suleski, Michael, Craig, Jack M, Kasprowicz, Adrienne E, Sanderford, Maxwell, Li, Michael, Stecher, Glen, Hedges, S Blair

“…Abstract We present the fifth edition of the TimeTree of Life resource (TToL5), a product of the timetree of life project that aims to synthesize published…”
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API Recommendation for Novice Programmers: Build a Bridge of Query-Task Knowledge Gap by Wang, Yong, Fang, Yingtao, Gao, Cuiyun, Chen, Linjun

“…During software development, programmers often rely on a wide range of application programming interfaces (APIs) to facilitate their tasks. However, APIs have…”
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DeePMD-kit v2: A software package for deep potential models by Zeng, Jinzhe, Zhang, Duo, Lu, Denghui, Mo, Pinghui, Li, Zeyu, Chen, Yixiao, Rynik, Marián, Huang, Li'ang, Li, Ziyao, Shi, Shaochen, Wang, Yingze, Ye, Haotian, Tuo, Ping, Yang, Jiabin, Ding, Ye, Li, Yifan, Tisi, Davide, Zeng, Qiyu, Bao, Han, Xia, Yu, Huang, Jiameng, Muraoka, Koki, Wang, Yibo, Chang, Junhan, Yuan, Fengbo, Bore, Sigbjørn Løland, Cai, Chun, Lin, Yinnian, Wang, Bo, Xu, Jiayan, Zhu, Jia-Xin, Luo, Chenxing, Zhang, Yuzhi, Goodall, Rhys E A, Liang, Wenshuo, Singh, Anurag Kumar, Yao, Sikai, Zhang, Jingchao, Wentzcovitch, Renata, Han, Jiequn, Liu, Jie, Jia, Weile, York, Darrin M, E, Weinan, Car, Roberto, Zhang, Linfeng, Wang, Han

“…DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics simulations using machine learning potentials known as Deep Potential…”
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Using an LLM to Help with Code Understanding by Nam, Daye, Macvean, Andrew, Hellendoorn, Vincent, Vasilescu, Bogdan, Myers, Brad

“…Understanding code is challenging, especially when working in new and complex development environments. Code comments and documentation can help, but are…”
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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python by Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary

“…Abstract Motivation Gene set enrichment analysis (GSEA) is a commonly used algorithm for characterizing gene expression changes. However, the currently…”
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OctaDist: a tool for calculating distortion parameters in spin crossover and coordination complexes by Ketkaew, Rangsiman, Tantirungrotechai, Yuthana, Harding, Phimphaka, Chastanet, Guillaume, Guionneau, Philippe, Marchivie, Mathieu, Harding, David J

“…OctaDist is an interactive and visual program for determination of structural distortion in octahedral coordination complexes such as spin crossover complexes,…”
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vcfpp: a C++ API for rapid processing of the variant call format by Li, Zilong

“…Motivation Given the widespread use of the variant call format (VCF/BCF) coupled with continuous surge in big data, there remains a perpetual demand for fast…”
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Albumentations: Fast and Flexible Image Augmentations by Buslaev, Alexander, Iglovikov, Vladimir I., Khvedchenya, Eugene, Parinov, Alex, Druzhinin, Mikhail, Kalinin, Alexandr A.

“…Data augmentation is a commonly used technique for increasing both the size and the diversity of labeled training sets by leveraging input transformations that…”
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TrackMate 7: integrating state-of-the-art segmentation algorithms into tracking pipelines by Ershov, Dmitry, Phan, Minh-Son, Pylvänäinen, Joanna W., Rigaud, Stéphane U., Le Blanc, Laure, Charles-Orszag, Arthur, Conway, James R. W., Laine, Romain F., Roy, Nathan H., Bonazzi, Daria, Duménil, Guillaume, Jacquemet, Guillaume, Tinevez, Jean-Yves

“…TrackMate is an automated tracking software used to analyze bioimages and is distributed as a Fiji plugin. Here, we introduce a new version of TrackMate…”
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Swarm Learning for decentralized and confidential clinical machine learning by Warnat-Herresthal, Stefanie, Schultze, Hartmut, Shastry, Krishnaprasad Lingadahalli, Manamohan, Sathyanarayanan, Mukherjee, Saikat, Garg, Vishesh, Sarveswara, Ravi, Händler, Kristian, Pickkers, Peter, Aziz, N. Ahmad, Ktena, Sofia, Tran, Florian, Bitzer, Michael, Ossowski, Stephan, Casadei, Nicolas, Herr, Christian, Petersheim, Daniel, Behrends, Uta, Kern, Fabian, Fehlmann, Tobias, Schommers, Philipp, Lehmann, Clara, Augustin, Max, Rybniker, Jan, Altmüller, Janine, Mishra, Neha, Bernardes, Joana P., Krämer, Benjamin, Bonaguro, Lorenzo, Schulte-Schrepping, Jonas, De Domenico, Elena, Siever, Christian, Kraut, Michael, Desai, Milind, Monnet, Bruno, Saridaki, Maria, Siegel, Charles Martin, Drews, Anna, Nuesch-Germano, Melanie, Theis, Heidi, Heyckendorf, Jan, Schreiber, Stefan, Kim-Hellmuth, Sarah, Nattermann, Jacob, Skowasch, Dirk, Kurth, Ingo, Keller, Andreas, Bals, Robert, Nürnberg, Peter, Rieß, Olaf, Rosenstiel, Philip, Netea, Mihai G., Theis, Fabian, Mukherjee, Sach, Backes, Michael, Aschenbrenner, Anna C., Ulas, Thomas, Breteler, Monique M. B., Giamarellos-Bourboulis, Evangelos J., Kox, Matthijs, Becker, Matthias, Cheran, Sorin, Woodacre, Michael S., Goh, Eng Lim, Schultze, Joachim L.

“…Fast and reliable detection of patients with severe and heterogeneous illnesses is a major goal of precision medicine 1 , 2 . Patients with leukaemia can be…”
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Conceptualising the FinDD API plug-in: A study of BIM-FM integration by Pärn, E.A., Edwards, D.J.

“…This research paper reports upon a client driven approach to iteratively develop the FinDD application programming interface (API) plug-in. FinDD integrates…”
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Quantum circuits with many photons on a programmable nanophotonic chip by Arrazola, J. M., Bergholm, V., Brádler, K., Bromley, T. R., Collins, M. J., Dhand, I., Fumagalli, A., Gerrits, T., Goussev, A., Helt, L. G., Hundal, J., Isacsson, T., Israel, R. B., Izaac, J., Jahangiri, S., Janik, R., Killoran, N., Kumar, S. P., Lavoie, J., Lita, A. E., Mahler, D. H., Menotti, M., Morrison, B., Nam, S. W., Neuhaus, L., Qi, H. Y., Quesada, N., Repingon, A., Sabapathy, K. K., Schuld, M., Su, D., Swinarton, J., Száva, A., Tan, K., Tan, P., Vaidya, V. D., Vernon, Z., Zabaneh, Z., Zhang, Y.

“…Growing interest in quantum computing for practical applications has led to a surge in the availability of programmable machines for executing quantum…”
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GPT is an effective tool for multilingual psychological text analysis by Rathje, Steve, Mirea, Dan-Mircea, Sucholutsky, Ilia, Marjieh, Raja, Robertson, Claire E, Van Bavel, Jay J

“…The social and behavioral sciences have been increasingly using automated text analysis to measure psychological constructs in text. We explore whether GPT,…”
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Enabling Cost-Benefit Analysis of Data Sync Protocols by Boskov, Novak, Trachtenberg, Ari, Starobinski, David

“…We describe a new middleware called GenSync that abstracts the subtleties of the state-of-the-art data synchronization protocols, allows users to choose…”
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HITRAN Application Programming Interface (HAPI): A comprehensive approach to working with spectroscopic data by Kochanov, R.V., Gordon, I.E., Rothman, L.S., Wcisło, P., Hill, C., Wilzewski, J.S.

“…The HITRAN Application Programming Interface (HAPI) is presented. HAPI is a free Python library, which extends the capabilities of the HITRANonline interface…”
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The new (Version 9) American Joint Committee on Cancer tumor, node, metastasis staging for cervical cancer by Olawaiye, Alexander B., Baker, Thomas P., Washington, M. Kay, Mutch, David G.

“…The American Joint Committee on Cancer (AJCC) tumor, node, metastasis (TNM) staging for all cancer sites has been periodically updated as a published manual…”
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How Does ChatGPT Perform on the United States Medical Licensing Examination (USMLE)? The Implications of Large Language Models for Medical Education and Knowledge Assessment by Gilson, Aidan, Safranek, Conrad W, Huang, Thomas, Socrates, Vimig, Chi, Ling, Taylor, Richard Andrew, Chartash, David

“…Chat Generative Pre-trained Transformer (ChatGPT) is a 175-billion-parameter natural language processing model that can generate conversation-style responses…”
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Popularity-Aware and Diverse Web APIs Recommendation Based on Correlation Graph by Wu, Shengqi, Shen, Shigen, Xu, Xiaolong, Chen, Ying, Zhou, Xiaokang, Liu, Dongning, Xue, Xiao, Qi, Lianyong

“…The ever-increasing web application programming interfaces (APIs) in various service-sharing communities (e.g., ProgrammableWeb.com and Mashape.com) have…”
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Toward a Shared Vision for Cancer Genomic Data by Grossman, Robert L, Heath, Allison P, Ferretti, Vincent, Varmus, Harold E, Lowy, Douglas R, Kibbe, Warren A, Staudt, Louis M

“…The Genomic Data Commons will initially house raw genomic data and diagnostic, histologic, and clinical outcome data from National Cancer Institute–funded…”
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GeneGPT: augmenting large language models with domain tools for improved access to biomedical information by Jin, Qiao, Yang, Yifan, Chen, Qingyu, Lu, Zhiyong

“…Motivation While large language models (LLMs) have been successfully applied to various tasks, they still face challenges with hallucinations. Augmenting LLMs…”
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