Search Results - jana AND python (source OR resource) code

Guide assignment in single-cell CRISPR screens using crispat by Braunger, Jana M, Velten, Britta

“… To address this, we here propose crispat (CRISPR guide assignment tool), a Python package to facilitate the choice of a suitable guide assignment strategy for single-cell CRISPR screens…”
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decoupleR: ensemble of computational methods to infer biological activities from omics data by Badia-i-Mompel, Pau, Vélez Santiago, Jesús, Braunger, Jana, Geiss, Celina, Dimitrov, Daniel, Müller-Dott, Sophia, Taus, Petr, Dugourd, Aurelien, Holland, Christian H, Ramirez Flores, Ricardo O, Saez-Rodriguez, Julio

“…Summary Many methods allow us to extract biological activities from omics data using information from prior knowledge resources, reducing the dimensionality for increased statistical power and better interpretability…”
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Marginalizing Sample Consensus by Barath, Daniel, Noskova, Jana, Matas, Jiri

“…A new method for robust estimation, MAGSAC++, is proposed. It introduces a new model quality (scoring) function that does not make inlier-outlier decisions,…”
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Zebrabase: An Intuitive Tracking Solution for Aquatic Model Organisms by Oltova, Jana, Jindrich, Jindrich, Skuta, Ctibor, Svoboda, Ondrej, Machonova, Olga, Bartunek, Petr

“…Small fish species, such as zebrafish and medaka, are increasingly gaining popularity in basic research and disease modeling as a useful alternative to rodent…”
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deepFPlearn +: enhancing toxicity prediction across the chemical universe using graph neural networks by Soulios, Kyriakos, Scheibe, Patrick, Bernt, Matthias, Hackermüller, Jörg, Schor, Jana

“…Abstract Summary Sophisticated approaches for the in silico prediction of toxicity are required to support the risk assessment of chemicals. The number of…”
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Open-Source Web Service with Morphological Dictionary-Supplemented Deep Learning for Morphosyntactic Analysis of Czech by Straka, Milan, Straková, Jana

“…We present an open-source web service for Czech morphosyntactic analysis. The system combines a deep learning model with rescoring by a high-precision morphological dictionary at inference time…”
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Physics-informed neural networks (P INNs): application categories, trends and impact by Ghalambaz, Mohammad, Sheremet, Mikhail A., Khan, Mohammed Arshad, Raizah, Zehba, Shafi, Jana

“… Design/methodology/approach WoS database was analyzed for PINNs using an inhouse python code…”
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Guide assignment in single-cell CRISPR screens using crispat by Braunger, Jana M., Velten, Britta

“… To address this, we here propose crispat (CRISPR guide assignment tool), a Python package to facilitate the choice of a suitable guide assignment strategy for single cell CRISPR screens…”
Get full text