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  1. 1

    Lingual-Fusion Adapter-Based Transfer Learning for Low-Resource Code Vulnerability Detection by Long, Xinyue, Guo, Shikai, Chai, Yu, Li, Hui, Jan, Sumaira Ameer, Ma, Qian, Ning, Qiao

    ISSN: 0098-3063, 1558-4127
    Published: New York IEEE 01.02.2025
    Published in IEEE transactions on consumer electronics (01.02.2025)
    “… points.For instance, in a scenario where a software system integrates legacy code in a low-resource programming language like PHP, detecting vulnerabilities becomes challenging due to data scarcity…”
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    Journal Article
  2. 2

    PHOTONAI—A Python API for rapid machine learning model development by Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim

    ISSN: 1932-6203, 1932-6203
    Published: San Francisco Public Library of Science 21.07.2021
    Published in PloS one (21.07.2021)
    “…PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development…”
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    Journal Article
  3. 3

    NeuroKit2: A Python toolbox for neurophysiological signal processing by Makowski, Dominique, Pham, Tam, Lau, Zen J., Brammer, Jan C., Lespinasse, François, Pham, Hung, Schölzel, Christopher, Chen, S. H. Annabel

    ISSN: 1554-3528, 1554-3528
    Published: New York Springer US 01.08.2021
    Published in Behavior research methods (01.08.2021)
    “…NeuroKit2 is an open-source, community-driven, and user-centered Python package for neurophysiological signal processing…”
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    Journal Article
  4. 4

    Pyisotopomer: A Python package for obtaining intramolecular isotope ratio differences from mass spectrometric analysis of nitrous oxide isotopocules by Kelly, Colette L., Manning, Cara, Frey, Claudia, Kaiser, Jan, Gluschankoff, Noah, Casciotti, Karen L.

    ISSN: 0951-4198, 1097-0231, 1097-0231
    Published: England Wiley Subscription Services, Inc 15.06.2023
    Published in Rapid communications in mass spectrometry (15.06.2023)
    “… The data analysis requires correcting for “scrambling” in the ion source, whereby the NO+ fragment ion obtains the outer N atom from the N2O molecule…”
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    Journal Article
  5. 5

    teemi: An open-source literate programming approach for iterative design-build-test-learn cycles in bioengineering by Petersen, Søren D., Levassor, Lucas, Pedersen, Christine M., Madsen, Jan, Hansen, Lea G., Zhang, Jie, Haidar, Ahmad K., Frandsen, Rasmus J. N., Keasling, Jay D., Weber, Tilmann, Sonnenschein, Nikolaus, K. Jensen, Michael

    ISSN: 1553-7358, 1553-734X, 1553-7358
    Published: United States Public Library of Science 01.03.2024
    Published in PLoS computational biology (01.03.2024)
    “…Synthetic biology dictates the data-driven engineering of biocatalysis, cellular functions, and organism behavior. Integral to synthetic biology is the…”
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    Journal Article
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    pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment by Warris, Sven, Timal, N. Roshan N., Kempenaar, Marcel, Poortinga, Arne M., van de Geest, Henri, Varbanescu, Ana L., Nap, Jan-Peter

    ISSN: 1932-6203, 1932-6203
    Published: United States Public Library of Science 02.01.2018
    Published in PloS one (02.01.2018)
    “… commonly used in bioinformatics, such as Python. The novel application pyPaSWAS presents the parallel SW sequence alignment code fully packed in Python…”
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    Journal Article
  7. 7

    Solar-MACH: An open-source tool to analyze solar magnetic connection configurations by Gieseler, Jan, Dresing, Nina, Palmroos, Christian, Freiherr von Forstner, Johan L., Price, Daniel J., Vainio, Rami, Kouloumvakos, Athanasios, Rodríguez-García, Laura, Trotta, Domenico, Génot, Vincent, Masson, Arnaud, Roth, Markus, Veronig, Astrid

    ISSN: 2296-987X, 2296-987X
    Published: Frontiers Media 28.02.2023
    Published in Frontiers in astronomy and space sciences (28.02.2023)
    “…The Solar MAgnetic Connection HAUS 1 tool (Solar-MACH) is an open-source tool completely written in Python that derives and visualizes the spatial configuration and solar magnetic connection of different observers (i.e…”
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    Journal Article
  8. 8

    PyBatteryID – A Python Package for Data-Driven Battery Model Identification using LPV Framework by Sheikh, Muiz, Donkers, Tijs, Bergveld, Henk Jan

    ISSN: 2049-9647, 2049-9647
    Published: Ubiquity Press Ltd 04.02.2026
    Published in Journal of open research software (04.02.2026)
    “…An open-source Python package named PyBatteryID has been developed for data-driven identification of battery models using the linear parameter-varying (LPV…”
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    Journal Article
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    Analysis of Functional Connectivity and Oscillatory Power Using DICS: From Raw MEG Data to Group-Level Statistics in Python by van Vliet, Marijn, Liljeström, Mia, Aro, Susanna, Salmelin, Riitta, Kujala, Jan

    ISSN: 1662-453X, 1662-4548, 1662-453X
    Published: Switzerland Frontiers Research Foundation 11.09.2018
    Published in Frontiers in neuroscience (11.09.2018)
    “… In this paper, we describe a full data analysis pipeline for functional connectivity analysis based on dynamic imaging of coherent sources (DICS) of MEG data…”
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    Journal Article
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    Solar energetic particle time series analysis with Python by Christian Palmroos, Jan Gieseler, Nina Dresing, Diana E. Morosan, Eleanna Asvestari, Aleksi Yli-Laurila, Daniel J. Price, Saku Valkila, Rami Vainio

    ISSN: 2296-987X
    Published: Frontiers Media S.A 15.12.2022
    Published in Frontiers in astronomy and space sciences (15.12.2022)
    “… and processing tools are needed. This manuscript introduces a series of Python functions that will enable the scientific community to download, load, and visualize…”
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    Journal Article
  11. 11

    PyThea: An open-source software package to perform 3D reconstruction of coronal mass ejections and shock waves by Kouloumvakos, Athanasios, Rodríguez-García, Laura, Gieseler, Jan, Price, Daniel J., Vourlidas, Angelos, Vainio, Rami

    ISSN: 2296-987X, 2296-987X
    Published: Frontiers Media S.A 06.09.2022
    Published in Frontiers in astronomy and space sciences (06.09.2022)
    “…PyThea is a newly developed open-source Python software package that provides tools to reconstruct coronal mass ejections (CMEs…”
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    Journal Article
  12. 12

    Solar Energetic Particle Time Series Analysis with Python by Palmroos, Christian, Gieseler, Jan, Dresing, Nina, Morosan, Diana E, Asvestari, Eleanna, Yli-Laurila, Aleksi, Price, Daniel J, Valkila, Saku, Vainio, Rami

    ISSN: 2331-8422
    Published: Ithaca Cornell University Library, arXiv.org 14.12.2022
    Published in arXiv.org (14.12.2022)
    “… and processing tools are needed. This manuscript introduces a series of Python functions that will enable the scientific community to download, load, and visualize…”
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    Paper
  13. 13

    Open-source skull reconstruction with MONAI by Li, Jianning, Ferreira, André, Puladi, Behrus, Alves, Victor, Kamp, Michael, Kim, Moon, Nensa, Felix, Kleesiek, Jens, Ahmadi, Seyed-Ahmad, Egger, Jan

    ISSN: 2352-7110, 2352-7110
    Published: Elsevier B.V 01.07.2023
    Published in SoftwareX (01.07.2023)
    “… The primary goal of this paper lies in the investigation of open-sourcing codes and pre-trained deep learning models under the MONAI framework…”
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    Journal Article
  14. 14

    ILLOD Replication Package: An Open-Source Framework for Abbreviation-Expansion Pair Detection and Term Consolidation in Requirements by Hasso, Hussein, Grosser, Katharina, Aymaz, Iliass, Geppert, Hanna, Jurjens, Jan

    ISSN: 2332-6441
    Published: IEEE 01.09.2023
    “… The artifact bundles all source code and data resources to replicate evaluation results presented for ILLOD in two research papers published at the REFSQ2022 Conference and in the Information and Software Technology (IST) journal…”
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    Conference Proceeding
  15. 15

    OpenML-Python: an extensible Python API for OpenML by Feurer, Matthias, van Rijn, Jan N, Kadra, Arlind, Gijsbers, Pieter, Mallik, Neeratyoy, Sahithya Ravi, Müller, Andreas, Vanschoren, Joaquin, Hutter, Frank

    ISSN: 2331-8422
    Published: Ithaca Cornell University Library, arXiv.org 23.06.2021
    Published in arXiv.org (23.06.2021)
    “… Source code and documentation is available at https://github.com/openml/openml-python/…”
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    Paper
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    Potential of the Julia Programming Language for High Energy Physics Computing by Eschle, Jonas, Gál, Tamás, Giordano, Mosè, Gras, Philippe, Hegner, Benedikt, Heinrich, Lukas, Hernandez Acosta, Uwe, Kluth, Stefan, Ling, Jerry, Mato, Pere, Mikhasenko, Mikhail, Moreno Briceño, Alexander, Pivarski, Jim, Samaras-Tsakiris, Konstantinos, Schulz, Oliver, Stewart, Graeme Andrew, Strube, Jan, Vassilev, Vassil

    ISSN: 2510-2036, 2510-2044
    Published: Cham Springer International Publishing 01.12.2023
    Published in Computing and software for big science (01.12.2023)
    “…Research in high energy physics (HEP) requires huge amounts of computing and storage, putting strong constraints on the code speed and resource usage…”
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    Journal Article
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    Parallel Programming with Python by Palach, Jan

    Published: Packt Publishing 25.06.2014
    “… in Python.The Python Parallel (PP) module, which is another mechanism for parallel programming, is covered in depth to help you optimize the usage of PP…”
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    eBook
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