Search Results - computing algorithms and (bioinformatics OR informatics)

New classifications for quantum bioinformatics: Q-bioinformatics, QCt-bioinformatics, QCg-bioinformatics, and QCr-bioinformatics by Mokhtari, Majid, Khoshbakht, Samane, Ziyaei, Kobra, Akbari, Mohammad Esmaeil, Moravveji, Sayyed Sajjad

“…Abstract Bioinformatics has revolutionized biology and medicine by using computational methods to analyze and interpret biological data…”
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Machine Learning for Healthcare: Handling and Managing Data by Agrawal, Rashmi, Chatterjee, Jyotir Moy, Kumar, Abhishek, Rathore, Pramod Singh, Le, Dac-Nhuong

“… This book will express the long-standing challenges in healthcare informatics and provide rational explanations of how to deal with them…”
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Rough-Fuzzy Pattern Recognition: Applications in Bioinformatics and Medical Imaging by Maji, Pradipta, Pal, Sankar K

“…"This book provides a unified framework describing how rough-fuzzy computing techniques can be formulated and used in building efficient pattern recognition models…”
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Unipro UGENE: a unified bioinformatics toolkit by Okonechnikov, Konstantin, Golosova, Olga, Fursov, Mikhail

“…Unipro UGENE is a multiplatform open-source software with the main goal of assisting molecular biologists without much expertise in bioinformatics to manage, analyze and visualize their data…”
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Differentially Private Asynchronous Federated Learning for Mobile Edge Computing in Urban Informatics by Lu, Yunlong, Huang, Xiaohong, Dai, Yueyue, Maharjan, Sabita, Zhang, Yan

“…Driven by technologies such as mobile edge computing and 5G, recent years have witnessed the rapid development of urban informatics, where a large amount of data is generated…”
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Molecular Computing and Bioinformatics by Liang, Xin, Zhu, Wen, Lv, Zhibin, Zou, Quan

“…Molecular computing and bioinformatics are two important interdisciplinary sciences that study molecules and computers…”
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Quantum computing in bioinformatics: a systematic review mapping by Nałęcz-Charkiewicz, Katarzyna, Charkiewicz, Kamil, Nowak, Robert M

“… Bioinformatics is one such domain that is developing in terms of QC. This article offers a broad mapping review of methods and algorithms of QC in bioinformatics, marking the first of its kind…”
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Bioinformatics: High Performance Parallel Computer Architectures by Schmidt, Bertil

“… Providing two introductory chapters to supply necessary background on sequential bioinformatics algorithms and parallel architectures-such as multi-cores, Cell B.E…”
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ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community by Castrignanò, Tiziana, Gioiosa, Silvia, Flati, Tiziano, Cestari, Mirko, Picardi, Ernesto, Chiara, Matteo, Fratelli, Maddalena, Amente, Stefano, Cirilli, Marco, Tangaro, Marco Antonio, Chillemi, Giovanni, Pesole, Graziano, Zambelli, Federico

“… Modern biological experiments are increasingly becoming both data and computationally intensive and the wealth of publicly available biological data is introducing bioinformatics into the “Big Data” era…”
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Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community by Krampis, Konstantinos, Booth, Tim, Chapman, Brad, Tiwari, Bela, Bicak, Mesude, Field, Dawn, Nelson, Karen E

“…Background A steep drop in the cost of next-generation sequencing during recent years has made the technology affordable to the majority of researchers, but downstream bioinformatic analysis still…”
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multiPhATE: bioinformatics pipeline for functional annotation of phage isolates by Ecale Zhou, Carol L, Malfatti, Stephanie, Kimbrel, Jeffrey, Philipson, Casandra, McNair, Katelyn, Hamilton, Theron, Edwards, Robert, Souza, Brian

“…) across a user-specified set of phage genomes. This tool incorporates a de novo phage gene calling algorithm and assigns putative functions to gene calls using protein-, virus- and phage-centric database…”
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Graphics processing units in bioinformatics, computational biology and systems biology by Nobile, Marco S, Cazzaniga, Paolo, Tangherloni, Andrea, Besozzi, Daniela

“…Abstract Several studies in Bioinformatics, Computational Biology and Systems Biology rely on the definition of physico-chemical or mathematical models of biological systems at different scales…”
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Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics by Baichoo, Shakuntala, Souilmi, Yassine, Panji, Sumir, Botha, Gerrit, Meintjes, Ayton, Hazelhurst, Scott, Bendou, Hocine, Beste, Eugene de, Mpangase, Phelelani T., Souiai, Oussema, Alghali, Mustafa, Yi, Long, O’Connor, Brian D., Crusoe, Michael, Armstrong, Don, Aron, Shaun, Joubert, Fourie, Ahmed, Azza E., Mbiyavanga, Mamana, Heusden, Peter van, Magosi, Lerato E., Zermeno, Jennie, Mainzer, Liudmila Sergeevna, Fadlelmola, Faisal M., Jongeneel, C. Victor, Mulder, Nicola

“… A key role of H3ABioNet is to support H3Africa projects by building bioinformatics infrastructure such as portable and reproducible bioinformatics workflows for use on heterogeneous African computing environments…”
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The Carbon Footprint of Bioinformatics by Grealey, Jason, Lannelongue, Loïc, Saw, Woei-Yuh, Marten, Jonathan, Méric, Guillaume, Ruiz-Carmona, Sergio, Inouye, Michael

“…Abstract Bioinformatic research relies on large-scale computational infrastructures which have a nonzero carbon footprint but so far, no study has quantified the environmental costs of bioinformatic…”
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An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics by Taylor, Ronald C

“…Background Bioinformatics researchers are now confronted with analysis of ultra large-scale data sets, a problem that will only increase at an alarming rate in coming years…”
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Profiling the BLAST bioinformatics application for load balancing on high-performance computing clusters by Cheng, Trinity, Chin, Pei-Ju, Cha, Kenny, Petrick, Nicholas, Mikailov, Mike

“…Background The Basic Local Alignment Search Tool (BLAST) is a suite of commonly used algorithms for identifying matches between biological sequences…”
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Bioinformatics: the machine learning approach by Baldi, Pierre, Brunak, Søren

“…A guide to machine learning approaches and their application to the analysis of biological data…”
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Feature selection methods for big data bioinformatics: A survey from the search perspective by Wang, Lipo, Wang, Yaoli, Chang, Qing

“…This paper surveys main principles of feature selection and their recent applications in big data bioinformatic…”
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ElasticBLAST: accelerating sequence search via cloud computing by Camacho, Christiam, Boratyn, Grzegorz M., Joukov, Victor, Vera Alvarez, Roberto, Madden, Thomas L.

“…) to categorize their query sequences. Producing such alignments is an essential bioinformatics task that is well suited for the cloud…”
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A fast adaptive algorithm for computing whole-genome homology maps by Jain, Chirag, Koren, Sergey, Dilthey, Alexander, Phillippy, Adam M, Aluru, Srinivas

“… Results We introduce an approximate algorithm for computing local alignment boundaries between long DNA sequences…”
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