Search Results - computational tools and databases

Unraveling the web of viroinformatics: computational tools and databases in virus research by Sharma, Deepak, Priyadarshini, Pragya, Vrati, Sudhanshu

“… The availability of more than 100 Web servers and databases embracing all or specific viruses (for example, dengue virus, influenza virus, hepatitis virus, human immunodeficiency virus [HIV…”
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A Practical Guide on Computational Tools and Databases for Transposable Elements in Plants by Oliveira, Liliane Santana, de Amorim, Tharcísio Soares, Pedro, Daniel Longhi Fernandes, da Rocha Vicente, Fábio Fernandes, Paschoal, Alexandre Rossi

“… Keeping this in mind, this chapter focuses on providing a practical knowledge guide about computational tools and databases of transposable elements (TE) in plants…”
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Computational tools and databases at the forefront to study geographic and genomic distribution of SARS-CoV-2 variants by Ali, Aarif, Malla, Bashir Ahmad, Ganie, Showkat Ahmad, Rehman, Muneeb U., Ahmad, Sheikh Bilal

“… The present study aims to use various computational approaches to study the mutational status, mutational frequency in viral genome, phylogenetics, genetic epidemiology, spatiotemporal and mutational…”
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Modern Approaches to Protein Constructions: A Comprehensive Review of Computational Tools and Databases for De Novo Protein Design and Engineering by Mia, Md. Mojnu, Sultana, Habiba, Amin, Md. Al, Hossain, Md. Sakhawat, Imam, Hasan, Mohiuddin, A. K. M., Mahmud, Shahin

“…ABSTRACT The field of protein engineering has witnessed transformative advancements, with computational tools and databases driving novel innovations in de novo protein design…”
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Symmetry-based computational tools and databases for magnetic crystallography in the Bilbao Crystallographic Server by Elcoro, Luis, Perez-Mato, J. Manuel, Gallego, Samuel V., Tasci, Emre S., de la Flor, Gemma, Aroyo, Mois I.

“…Abstract only…”
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A Review on Computational Tools and Databases for the Development of Vaccines Against Infectious Diseases by Jamal, Qazi Mohammad Sajid

“… in the area of immunology and vaccine designing. Many databases and tools with huge molecular level information are freely available to utilize in the outgoing research work…”
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Editorial: Advances in viromics: new tools, challenges, and data towards characterizing human and environmental viromes by Džunková, Mária, Moraru, Cristina, Anantharaman, Karthik

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Limitations and challenges in protein stability prediction upon genome variations: towards future applications in precision medicine by Sanavia, Tiziana, Birolo, Giovanni, Montanucci, Ludovica, Turina, Paola, Capriotti, Emidio, Fariselli, Piero

“…) the limited number of thermodynamic measurements for proteins provided by current databases; 2) the large intrinsic variability…”
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Making fundamental scientific discoveries by combining information from literature, databases, and computational tools – An example by Stielow, Bastian, Simon, Clara, Liefke, Robert

“…In recent years, the amount of available literature, data and computational tools has increased exponentially, providing opportunities and challenges to make use of this vast amount of material…”
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Structure–function relationship of long noncoding RNAs: Advances and challenges by Longkumer, Imliyangla, Mishra, Seema

“…Long noncoding RNAs (lncRNAs) are an emerging and a promising class of RNAs, and the lncRNA field is an intense research area. Once trashed as the junk regions…”
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Editorial: Computational Approaches to Study the Impact of Mutations on Disease and Drug Resistance by Ben-Tal, Nir, Kihara, Daisuke, Pandurangan, Arun Prasad

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A review on antimicrobial peptides databases and the computational tools by Ramazi, Shahin, Mohammadi, Neda, Allahverdi, Abdollah, Khalili, Elham, Abdolmaleki, Parviz

“…Antimicrobial Peptides (AMPs) have been considered as potential alternatives for infection therapeutics since antibiotic resistance has been raised as a global…”
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Tools and databases for non-coding RNAs by Zawar, Akshaykumar, Datta, Srinka, Rathi, Rishita, Shinde, Rituja, Kalamkar, Anushka, Dangi, Neeraj, Deshpande, Poonam

“…Non-coding RNAs (ncRNAs) play a crucial role in various cellular processes, challenging the earlier notion that non-coding regions of the genome are merely…”
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Computational methods, databases and tools for synthetic lethality prediction by Wang, Jing, Zhang, Qinglong, Han, Junshan, Zhao, Yanpeng, Zhao, Caiyun, Yan, Bowei, Dai, Chong, Wu, Lianlian, Wen, Yuqi, Zhang, Yixin, Leng, Dongjin, Wang, Zhongming, Yang, Xiaoxi, He, Song, Bo, Xiaochen

“…% of all potential pairs due to large number of human gene combinations. Computational prediction methods complement wet-lab-based methods to effectively reduce the search space of SL pairs…”
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Role of non-coding RNAs in quality improvement of horticultural crops: computational tools, databases, and algorithms for identification and analysis by Bashir, Tanzeel, Husaini, Amjad M.

“…Horticultural crops, including fruits, vegetables, flowers, and herbs, are essential for food security and economic sustainability. Advances in biotechnology,…”
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A survey of circular RNAs in complex diseases: databases, tools and computational methods by Xiao, Qiu, Dai, Jianhua, Luo, Jiawei

“… As traditional experimental methods are usually time-consuming and laborious, computational models have made significant progress in systematically exploring potential circRNA-disease associations…”
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PepBind： A Comprehensive Database and Computational Tool for Analysis of Protein-peptide Interactions by Das, Arindam Atanu, Sharma, Om Prakash, Kumar, Muthuvel Suresh, Krishna, Ramadas, Mathur, Premendu P.

“… To derive the details of the protein-peptide interaction mechanism is often a cumbersome task, though it can be made easier with the availability of specific databases and tools…”
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Next-generation computational tools and resources for coronavirus research: From detection to vaccine discovery by Kangabam, Rajiv, Sahoo, Susrita, Ghosh, Arpan, Roy, Riya, Silla, Yumnam, Misra, Namrata, Suar, Mrutyunjay

“… Recent multi-disciplinary studies using bioinformatics methods like sequence-similarity, phylogenomic, and computational structural biology have provided an in-depth understanding of the molecular…”
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The lncRNA Toolkit: Databases and In Silico Tools for lncRNA Analysis by Pinkney, Holly R., Wright, Brandon M., Diermeier, Sarah D.

“… Here, we review a selection of computational tools and databases for the in silico analysis of lncRNAs, including tissue-specific expression, protein coding potential, subcellular localization…”
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Computational models, databases and tools for antibiotic combinations by Lv, Ji, Liu, Guixia, Hao, Junli, Ju, Yuan, Sun, Binwen, Sun, Ying

“… In recent years, an increasing number of researchers have used computational models to predict effective antibiotic combinations…”
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