Search Results - Microarray preprocessing

A framework for oligonucleotide microarray preprocessing by Carvalho, Benilton S., Irizarry, Rafael A.

“… However, the expansion of microarray applications has exposed the limitation of existing tools. Results…”
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Impact of Microarray Preprocessing Techniques in Unraveling Biological Pathways by Deandrés-Galiana, Enrique J, Fernández-Martínez, Juan Luis, Saligan, Leorey N, Sonis, Stephen T

“…To better understand the impact of microarray preprocessing normalization techniques on the analysis of biological pathways in the prediction of chronic fatigue (CF…”
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Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples by Gyorffy, Balazs, Molnar, Bela, Lage, Hermann, Szallasi, Zoltan, Eklund, Aron C.

“…Several preprocessing algorithms for Affymetrix gene expression microarrays have been developed, and their performance on spike-in data sets has been evaluated previously…”
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Affymetrix GeneChip microarray preprocessing for multivariate analyses by McCall, M. N., Almudevar, A.

“…Affymetrix GeneChip microarrays are the most widely used high-throughput technology to measure gene expression, and a wide variety of preprocessing methods have been developed to transform probe…”
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Impact of the spotted microarray preprocessing method on fold-change compression and variance stability by Ambroise, Jérôme, Bearzatto, Bertrand, Robert, Annie, Govaerts, Bernadette, Macq, Benoît, Gala, Jean-Luc

“…Background The standard approach for preprocessing spotted microarray data is to subtract the local background intensity from the spot foreground intensity, to perform a log2 transformation…”
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affyPara - a Bioconductor Package for Parallelized Preprocessing Algorithms of Affymetrix Microarray Data by Schmidberger, Markus, Vicedo, Esmeralda, Mansmann, Ulrich

“… The preprocessing of large amounts of microarrays is still a challenge. The algorithms are limited by the available computer hardware…”
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A Multi-Objective Evolutionary Approach for Preprocessing Imbalanced Microarray Datasets by Rangasamy, DeviPriya, Rajappan, Sivaraj, Natesan, Mohan

“…Microarray datasets are usually imbalanced with a huge number of features and few samples…”
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Micro-Analyzer: Automatic preprocessing of Affymetrix microarray data by Guzzi, Pietro Hiram, Cannataro, Mario

“… (images and textual raw data). The analysis of microarray data requires an initial preprocessing phase, that makes raw data suitable for use on existing analysis platforms, such as the TIGR M4 (TM4) Suite…”
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Statistical challenges in preprocessing in microarray experiments in cancer by Owzar, Kouros, Barry, William T, Jung, Sin-Ho, Sohn, Insuk, George, Stephen L

“… This article provides an overview of preprocessing methods, including summary algorithms and quality control metrics for microarray…”
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Comparison of microarray preprocessing methods by Shakya, K, Ruskin, H J, Kerr, G, Crane, M, Becker, J

“…Data preprocessing in microarray technology is a crucial initial step before data analysis is performed…”
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Framework for Parallel Preprocessing of Microarray Data Using Hadoop by Sahlabadi, Amirhossein, Chandren Muniyandi, Ravie, Sahlabadi, Mahdi, Golshanbafghy, Hossein

“…Nowadays, microarray technology has become one of the popular ways to study gene expression and diagnosis of disease…”
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Comparing preprocessing strategies for 3D-Gene microarray data of extracellular vesicle-derived miRNAs by Takemoto, Yuto, Ito, Daisuke, Komori, Shota, Kishimoto, Yoshiyuki, Yamada, Shinichiro, Hashizume, Atsushi, Katsuno, Masahisa, Nakatochi, Masahiro

“… miRNA microarrays are widely used to quantify circulating EV-miRNA levels, and the preprocessing of miRNA microarray data is critical for analytical accuracy and reliability…”
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Impact of the spotted microarray preprocessing method on fold-change compression and variance stability by Ambroise, Jérôme, Bearzatto, Bertrand, Robert, Annie, Govaerts, Bernadette, Macq, Benoît, Gala, Jean-Luc

“…The standard approach for preprocessing spotted microarray data is to subtract the local background intensity from the spot foreground intensity, to perform a log2 transformation and to normalize…”
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Comparing preprocessing strategies for 3D-Gene microarray data of extracellular vesicle-derived miRNAs by Takemoto, Yuto, Ito, Daisuke, Komori, Shota, Kishimoto, Yoshiyuki, Yamada, Shinichiro, Hashizume, Atsushi, Katsuno, Masahisa, Nakatochi, Masahiro

“… miRNA microarrays are widely used to quantify circulating EV-miRNA levels, and the preprocessing of miRNA microarray data is critical for analytical accuracy and reliability…”
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Microarray Data Preprocessing: From Experimental Design to Differential Analysis by Federico, Antonio, Saarimäki, Laura Aliisa, Serra, Angela, Del Giudice, Giusy, Kinaret, Pia Anneli Sofia, Scala, Giovanni, Greco, Dario

“…DNA microarray data preprocessing is of utmost importance in the analytical path starting from the experimental design and leading to a reliable biological interpretation…”
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Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples by Gyorffy, Balazs, Molnar, Bela, Lage, Hermann, Szallasi, Zoltan, Eklund, Aron C.

“…Several preprocessing algorithms for Affymetrix gene expression microarrays have been developed, and their performance on spike-in data sets has been evaluated previously…”
Get full text

Evaluation of Microarray Preprocessing Algorithms Based on Concordance with RT-PCR in Clinical Samples by Gyorffy, Balazs, Molnar, Bela, Lage, Hermann, Szallasi, Zoltan, Eklund, Aron C.

“…Several preprocessing algorithms for Affymetrix gene expression microarrays have been developed, and their performance on spike-in data sets has been evaluated previously…”
Get full text

Preprocessing and downstream analysis of microarray DNA copy number profiles by van de Wiel, M. A., Picard, F., van Wieringen, W. N., Ylstra, B.

“… by microarray technology and review the extensive literature on preprocessing methods such as segmentation and calling…”
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Preprocessing differential methylation hybridization microarray data by Sun, Shuying, Huang, Yi-Wen, Yan, Pearlly S, Huang, Tim HM, Lin, Shili

“…) protocol has been developed and large amounts of DMH microarray data have been generated…”
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arrayMagic: two-colour cDNA microarray quality control and preprocessing by Buness, Andreas, Huber, Wolfgang, Steiner, Klaus, Sültmann, Holger, Poustka, Annemarie

“…arrayMagic is a software package for quality control and preprocessing of two-colour cDNA microarray data…”
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