Search Results - Advanced Techniques in Bioimage Analysis and Microscopy

Prospective multicentre accuracy evaluation of the FUJIFILM SILVAMP TB LAM test for the diagnosis of tuberculosis in people living with HIV demonstrates lot-to-lot variability by Rita Székely, Bianca Sossen, Madalo Mukoka, Monde Muyoyeta, Elizabeth Nakabugo, Jerry Hella, Hung Van Nguyen, Sasiwimol Ubolyam, Kinuyo Chikamatsu, Aurélien Macé, Marcia Vermeulen, Chad M Centner, Sarah Nyangu, Nsala Sanjase, Mohamed Sasamalo, Huong Thi Dinh, The Anh Ngo, Weerawat Manosuthi, Supunnee Jirajariyavej, Satoshi Mitarai, Nhung Viet Nguyen, Anchalee Avihingsanon, Klaus Reither, Lydia Nakiyingi, Andrew D Kerkhoff, Peter MacPherson, Graeme Meintjes, Claudia M Denkinger, Morten Ruhwald, FujiLAM Study Consortium

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Avoiding a replication crisis in deep-learning-based bioimage analysis by Laine, Romain F, Arganda-Carreras, Ignacio, Henriques, Ricardo, Jacquemet, Guillaume

“… One promise of deep learning is parameter-free one-click image analysis with expert-level performance in a fraction of the time previously required…”
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Segmentation metric misinterpretations in bioimage analysis by Hirling, Dominik, Tasnadi, Ervin, Caicedo, Juan, Caroprese, Maria V., Sjögren, Rickard, Aubreville, Marc, Koos, Krisztian, Horvath, Peter

“…Quantitative evaluation of image segmentation algorithms is crucial in the field of bioimage analysis…”
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Challenges and opportunities in bioimage analysis by Li, Xinyang, Zhang, Yuanlong, Wu, Jiamin, Dai, Qionghai

“…Advanced imaging techniques provide holistic observations of complicated biological phenomena across multiple scales while posing great challenges to data analysis…”
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What’s next for bioimage analysis?

“…Advanced bioimage analysis tools are poised to disrupt the way in which microscopy images are acquired and analyzed…”
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Bioimage Data Analysis Workflows ‒ Advanced Components and Methods by Miura, Kota, Sladoje, Natasa

“…This open access textbook aims at providing detailed explanations on how to design and construct image analysis workflows to successfully conduct bioimage analysis…”
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Icy: an open bioimage informatics platform for extended reproducible research by de Chaumont, Fabrice, Dallongeville, Stéphane, Chenouard, Nicolas, Hervé, Nicolas, Pop, Sorin, Provoost, Thomas, Meas-Yedid, Vannary, Pankajakshan, Praveen, Lecomte, Timothée, Le Montagner, Yoann, Lagache, Thibault, Dufour, Alexandre, Olivo-Marin, Jean-Christophe

“…Icy is a collaborative platform for biological image analysis that extends reproducible research principles by facilitating and stimulating the contribution and sharing of algorithm-based tools…”
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The Twenty Questions of bioimage object analysis by Cimini, Beth A., Eliceiri, Kevin W.

“…, making communication hard across disciplines. This work proposes a set of standardized questions that can guide analyses and shows how it can improve the future of bioimage analysis as a whole by making image analysis workflows and tools more FAIR…”
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Image Data Resource: a bioimage data integration and publication platform by Williams, Eleanor, Moore, Josh, Li, Simon W, Rustici, Gabriella, Tarkowska, Aleksandra, Chessel, Anatole, Leo, Simone, Antal, Bálint, Ferguson, Richard K, Sarkans, Ugis, Brazma, Alvis, Carazo Salas, Rafael E, Swedlow, Jason R

“…). IDR links data from several imaging modalities, including high-content screening, multi-dimensional microscopy and digital pathology, with public genetic or chemical databases and cell and tissue…”
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Omega — harnessing the power of large language models for bioimage analysis by Royer, Loïc A.

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Multimodal large language models for bioimage analysis by Zhang, Shanghang, Dai, Gaole, Huang, Tiejun, Chen, Jianxu

“… commercial applications, but also for many scientific fields. Here we give a brief overview of multimodal large language models through the lens of bioimage analysis and discuss…”
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Why bioimage informatics matters by Myers, Gene

“…Driven by the importance of spatial and physical factors in cellular processes and the size and complexity of modern image data, computational analysis of biological imagery has become a vital…”
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Using AI in bioimage analysis to elevate the rate of scientific discovery as a community by Nogare, Damian Dalle, Hartley, Matthew, Deschamps, Joran, Ellenberg, Jan, Jug, Florian

“…The future of bioimage analysis is increasingly defined by the development and use of tools that rely on deep learning and artificial intelligence (AI…”
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When seeing is not believing: application-appropriate validation matters for quantitative bioimage analysis by Chen, Jianxu, Viana, Matheus P., Rafelski, Susanne M.

“…A key step toward biologically interpretable analysis of microscopy image-based assays is rigorous quantitative validation with metrics appropriate for the particular application in use…”
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The future of bioimage analysis: a dialog between mind and machine by Royer, Loïc A.

“…The field of bioimage analysis is poised for a major transformation, owing to advancements in imaging technologies and artificial intelligence…”
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Bioimage analysis of Shigella infection reveals targeting of colonic crypts by Arena, Ellen T, Campbell-Valois, Francois-Xavier, Tinevez, Jean-Yves, Nigro, Giulia, Sachse, Martin, Moya-Nilges, Maryse, Nothelfer, Katharina, Marteyn, Benoit, Shorte, Spencer L, Sansonetti, Philippe J

“…Few studies within the pathogenic field have used advanced imaging and analytical tools to quantitatively measure pathogenicity in vivo…”
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Bioimage Data Analysis Workflows by 三浦, 耕太, Sladoje, Nataša

“… The textbook is chiefly intended for advanced undergraduates in the life sciences and biomedicine without a theoretical background in data analysis, as well as for postdocs, staff scientists and…”
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Current challenges in open-source bioimage informatics by Cardona, Albert, Tomancak, Pavel

“…We discuss the advantages and challenges of the open-source strategy in biological image analysis and argue that its full impact will not be realized without better support and recognition of software…”
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Bioimage informatics: a new area of engineering biology by Peng, Hanchuan

“… There has been an increasing focus on developing novel image processing, data mining, database and visualization techniques to extract, compare, search and manage the biological knowledge…”
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Bioimage-based protein subcellular location prediction: a comprehensive review by XU, Ying-Ying, YAO, Li-Xiu, SHEN, Hong-Bin

“… With the breakthrough of recent molecule imaging techniques, the usage of 2D bioimages has become increasingly popular in automatically analyzing the protein subcellular location patterns…”
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