Search Results - • Computing Statistical Reproducibility

An integrated phenology modelling framework in r by Hufkens, Koen, Basler, David, Milliman, Tom, Melaas, Eli K., Richardson, Andrew D., Goslee, Sarah

“…Phenology is a first‐order control on productivity and mediates the biophysical environment by altering albedo, surface roughness length and…”
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GCAC: galaxy workflow system for predictive model building for virtual screening by Bharti, Deepak R., Hemrom, Anmol J., Lynn, Andrew M.

“… This paper describes the development and availability of a knowledge based predictive model building system using the R Statistical Computing Environment and its ensured reproducibility…”
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Quantitative assessment of photic phenomena in the presbyopia-correcting intraocular lens by Ukai, Yuki, Okemoto, Hajime, Seki, Yusuke, Nakatsugawa, Yui, Kawasaki, Akane, Shibata, Teppei, Mito, Tsuyoshi, Kubo, Eri, Sasaki, Hiroshi

“…–Altman plots were used to analyze statistical data (Easy R version 1.37; R Foundation for Statistical Computing, Vienna, Austria…”
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Statistical Quality and Reproducibility of Pseudorandom Number Generators in Machine Learning Technologies by Antunes, Benjamin

“… Yet, the statistical quality and reproducibility of these generators—particularly when integrated into frameworks like PyTorch, TensorFlow, and NumPy—are underexplored…”
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Semi-automatic detection of myocardial trabeculation using cardiovascular magnetic resonance: correlation with histology and reproducibility in a mouse model of non-compaction by Frandon, Julien, Bricq, Stéphanie, Bentatou, Zakarya, Marcadet, Laetitia, Barral, Pierre Antoine, Finas, Mathieu, Fagret, Daniel, Kober, Frank, Habib, Gilbert, Bernard, Monique, Lalande, Alain, Miquerol, Lucile, Jacquier, Alexis

“…Background The definition of left ventricular (LV) non-compaction is controversial, and discriminating between normal and excessive LV trabeculation remains…”
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Scientific discovery in a model-centric framework: Reproducibility, innovation, and epistemic diversity by Devezer, Berna, Nardin, Luis G., Baumgaertner, Bert, Buzbas, Erkan Ozge

“… We refer to results satisfying this consistency as reproducible and assume that reproducibility is a desirable property of scientific discovery…”
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Infrastructure and Tools for Teaching Computing Throughout the Statistical Curriculum by Çetinkaya-Rundel, Mine, Rundel, Colin

“… Additionally, recent curricular guidelines clearly state that working with data requires extensive computing skills and that statistics students should be fluent in accessing, manipulating, analyzing…”
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Improved quality metrics for association and reproducibility in chromatin accessibility data using mutual information by Roth, Cullen, Venu, Vrinda, Job, Vanessa, Lubbers, Nicholas, Sanbonmatsu, Karissa Y., Steadman, Christina R., Starkenburg, Shawn R.

“…Background Correlation metrics are widely utilized in genomics analysis and often implemented with little regard to assumptions of normality, homoscedasticity,…”
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Key Attributes of a Modern Statistical Computing Tool by McNamara, Amelia

“… critique them. This article presents a set of attributes necessary for a modern statistical computing tool. The framework was designed to be broadly applicable to both novice…”
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Distribution-Free Predictive Inference for Regression by Lei, Jing, G'Sell, Max, Rinaldo, Alessandro, Tibshirani, Ryan J., Wasserman, Larry

“…We develop a general framework for distribution-free predictive inference in regression, using conformal inference. The proposed methodology allows for the…”
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Teaching Computational Reproducibility for Neuroimaging by Millman, K. Jarrod, Brett, Matthew, Barnowski, Ross, Poline, Jean-Baptiste

“…We describe a project-based introduction to reproducible and collaborative neuroimaging analysis. Traditional teaching on neuroimaging usually consists of a…”
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Computing average shaped tissue probability templates by Ashburner, John, Friston, Karl J.

“…This note presents a framework for generating tissue probability maps that represent the average shape of a number of subjects' brain images. The procedure is…”
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Vectorization of random number generation and reproducibility of concurrent particle transport simulation by Jun, S Y, Canal, P, Apostolakis, J, Gheata, A, Moneta, L

“…Efficient random number generation with high quality statistical properties and exact reproducibility of Monte Carlo simulations are important requirements in many areas of computational science…”
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Reproducibility assessment of magnetic resonance spectroscopy of pregenual anterior cingulate cortex across sessions and vendors via the cloud computing platform CloudBrain-MRS by Chen, Runhan, Lin, Meijin, Chen, Jianshu, Lin, Liangjie, Wang, Jiazheng, Li, Xiaoqing, Wang, Jianhua, Huang, Xu, Qian, Ling, Liu, Shaoxing, Long, Yuan, Guo, Di, Qu, Xiaobo, Han, Haiwei

“…•The reproducibility assessment of magnetic resonance spectroscopy was explored.•CV and ICC showed good reliability of within- and between- scanning sessions…”
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Computing inter-rater reliability and its variance in the presence of high agreement by Gwet, Kilem Li

“…Pi (π) and kappa (κ) statistics are widely used in the areas of psychiatry and psychological testing to compute the extent of agreement between raters on…”
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NMRbox: A Resource for Biomolecular NMR Computation by Maciejewski, Mark W, Schuyler, Adam D, Gryk, Michael R, Moraru, Ion I, Romero, Pedro R, Ulrich, Eldon L, Eghbalnia, Hamid R, Livny, Miron, Delaglio, Frank, Hoch, Jeffrey C

“… To simplify access to and use of biomolecular NMR software, foster persistence, and enhance reproducibility…”
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Integration of Quantum Chemistry, Statistical Mechanics, and Artificial Intelligence for Computational Spectroscopy: The UV-Vis Spectrum of TEMPO Radical in Different Solvents by Falbo, Emanuele, Fusè, Marco, Lazzari, Federico, Mancini, Giordano, Barone, Vincenzo

“…The ongoing integration of quantum chemistry, statistical mechanics, and artificial intelligence is paving the route toward more effective and accurate strategies for the investigation…”
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ROTS: An R package for reproducibility-optimized statistical testing by Suomi, Tomi, Seyednasrollah, Fatemeh, Jaakkola, Maria K., Faux, Thomas, Elo, Laura L.

“… To this end, the reproducibility-optimized test statistic (ROTS) adjusts a modified t-statistic according to the inherent properties of the data and provides a ranking…”
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Validation of the Mobile Application Rating Scale (MARS) by Terhorst, Yannik, Philippi, Paula, Sander, Lasse B., Schultchen, Dana, Paganini, Sarah, Bardus, Marco, Santo, Karla, Knitza, Johannes, Machado, Gustavo C., Schoeppe, Stephanie, Bauereiß, Natalie, Portenhauser, Alexandra, Domhardt, Matthias, Walter, Benjamin, Krusche, Martin, Baumeister, Harald, Messner, Eva-Maria

“…Mobile health apps (MHA) have the potential to improve health care. The commercial MHA market is rapidly growing, but the content and quality of available MHA…”
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Approximation trees: statistical reproducibility in model distillation by Zhou, Yichen, Zhou, Zhengze, Hooker, Giles

“…This paper examines the reproducibility of learned explanations for black-box predictions via model distillation using classification trees…”
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