Suchergebnisse - (( (staten OR state) python code analysis ) OR ( state:oh python code analysis ))*

VeVaPy, a Python Platform for Efficient Verification and Validation of Systems Biology Models with Demonstrations Using Hypothalamic-Pituitary-Adrenal Axis Models von Parker, Christopher, Nelson, Erik, Zhang, Tongli

“… VeVaPy includes four functional modules coded in Python, and the source code is publicly available …”
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Percolation theory using Python von Malthe-Sørenssen, Anders

“… Readers will learn how to generate, analyze, and comprehend data and models, with detailed theoretical discussions complemented by accessible computer codes …”
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SNPAAMapper-Python: A highly efficient genome-wide SNP variant analysis pipeline for Next-Generation Sequencing data von Li, Chang, Ma, Kevin, Xu, Nicole, Fu, Chenjian, He, Andrew, Liu, Xiaoming, Bai, Yongsheng

“… In this study, we updated SNPAAMapper, a variant annotation pipeline by converting perl codes to python for generating annotation output with an improved computational efficiency and updated …”
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lefser: implementation of metagenomic biomarker discovery tool, LEfSe, in R von Khleborodova, Asya, Gamboa-Tuz, Samuel D, Ramos, Marcel, Segata, Nicola, Waldron, Levi, Oh, Sehyun

“… Summary LEfSe is a widely used Python package and Galaxy module for metagenomic biomarker discovery and visualization, utilizing the Kruskal …”
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Statistics Using Python von Campesato, Oswald

“… This book is designed to offer a fast-paced yet thorough introduction to essential statistical concepts using Python code samples, and aims to assist data scientists in their daily endeavors …”
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Identification of Novel Microcystins Using High-Resolution MS and MSn with Python Code von Baliu-Rodriguez, David, Peraino, Nicholas J, Premathilaka, Sanduni H, Birbeck, Johnna A, Baliu-Rodriguez, Tomás, Westrick, Judy A, Isailovic, Dragan

“… Cyanotoxins called microcystins (MCs) are highly toxic and can be present in drinking water sources. Determining the structure of MCs is paramount because of …”
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PyLAT: Python LAMMPS Analysis Tools von Humbert, Michael T, Zhang, Yong, Maginn, Edward J

“… Here we describe a suite of open-source Python-based postprocessing routines we have developed called PyLAT …”
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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python von Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary

“… Abstract Motivation Gene set enrichment analysis (GSEA) is a commonly used algorithm for characterizing gene expression changes …”
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Digitizing ECG image: A new method and open-source software code von Fortune, Julian D., Coppa, Natalie E., Haq, Kazi T., Patel, Hetal, Tereshchenko, Larisa G.

“… asynchronous ECG leads.•We provided open-source Python code that will facilitate further development of the tool …”
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Pyteomics—a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics von Goloborodko, Anton A., Levitsky, Lev I., Ivanov, Mark V., Gorshkov, Mikhail V.

“… Pyteomics is a cross-platform, open-source Python library providing a rich set of tools for MS-based proteomics …”
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VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres von Tsai, Shang-Min, Lyons, James R., Grosheintz, Luc, Rimmer, Paul B., Kitzmann, Daniel, Heng, Kevin

“… We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN …”
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Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF von Venkatasubramanian, Meenakshi, Chetal, Kashish, Schnell, Daniel J, Atluri, Gowtham, Salomonis, Nathan

“… Results We describe a new iteration of ICGS that outperforms state-of-the-art scRNA-Seq detection workflows when applied …”
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RPMDrate: Bimolecular chemical reaction rates from ring polymer molecular dynamics von Suleimanov, Yu.V., Allen, J.W., Green, W.H.

“… (centroid density quantum transition state theory (QTST) rate) and a dynamic (ring polymer transmission coefficient) factor …”
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PypKa: A Flexible Python Module for Poisson-Boltzmann-Based pKa Calculations von Reis, Pedro B P S, Vila-Viçosa, Diogo, Rocchia, Walter, Machuqueiro, Miguel

“… The protonation of titratable residues has a significant impact on the structure and function of biomolecules, influencing many physicochemical and ADME …”
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stk: A python toolkit for supramolecular assembly von Turcani, Lukas, Berardo, Enrico, Jelfs, Kim E.

“… stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes …”
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Coherent manipulation of the internal state of ultracold 87Rb133Cs molecules with multiple microwave fields von Blackmore, Jacob A, Gregory, Philip D, Bromley, Sarah L, Cornish, Simon L

“… We explore coherent multi-photon processes in 87Rb133Cs molecules using 3-level lambda and ladder configurations of rotational and hyperfine states, and discuss their relevance to future applications …”
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MechElastic: A Python library for analysis of mechanical and elastic properties of bulk and 2D materials von Singh, Sobhit, Lang, Logan, Dovale-Farelo, Viviana, Herath, Uthpala, Tavadze, Pedram, Coudert, François-Xavier, Romero, Aldo H.

“… The MechElastic Python package evaluates the mechanical and elastic properties of bulk and 2D materials using the elastic coefficient matrix (Cij …”
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scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data von Faure, Louis, Soldatov, Ruslan, Kharchenko, Peter V, Adameyko, Igor

“… Abstract Summary scFates provides an extensive toolset for the analysis of dynamic trajectories comprising tree learning, feature association testing, branch differential expression and with a …”
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The fast azimuthal integration Python library: pyFAI von Ashiotis, Giannis, Deschildre, Aurore, Nawaz, Zubair, Wright, Jonathan P., Karkoulis, Dimitrios, Picca, Frédéric Emmanuel, Kieffer, Jérôme

“… It is written in Python (with binary submodules for improved performance), a language widely accepted and used by the scientific community today, which enables users to easily incorporate the pyFAI library into their processing pipeline …”
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pyIAST: Ideal adsorbed solution theory (IAST) Python package von Simon, Cory M., Smit, Berend, Haranczyk, Maciej

“… We present an open-source, user-friendly Python package, pyIAST, to perform IAST calculations for an arbitrary number of components …”
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