Výsledky vyhledávání - (( graph algorithms in informatics ) OR ( graph algorithms in informatika ))~

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    Graph representation learning in bioinformatics: trends, methods and applications Autor Yi, Hai-Cheng, You, Zhu-Hong, Huang, De-Shuang, Kwoh, Chee Keong

    ISSN: 1467-5463, 1477-4054, 1477-4054
    Vydáno: England Oxford University Press 17.01.2022
    Vydáno v Briefings in bioinformatics (17.01.2022)
    “… Ubiquitous real-life biomedical problems can be modeled as graph analytics tasks. Machine learning, especially deep learning, succeeds in vast bioinformatics scenarios with data represented in Euclidean domain…”
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    Journal Article
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    Data mining : concepts and techniques Autor Han, Jiawei, Kamber, Micheline, Pei, Jian

    ISBN: 0123814790, 9780123814791, 1558609016, 9781558609013
    Vydáno: Waltham, Mass. ; Tokyo Morgan Kaufmann 2012
    “…Our ability to generate and collect data has been increasing rapidly. Not only are all of our business, scientific, and government transactions now…”
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    E-kniha Kniha
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    Fitchi: haplotype genealogy graphs based on the Fitch algorithm Autor Matschiner, Michael

    ISSN: 1367-4803, 1367-4811, 1460-2059
    Vydáno: England 15.04.2016
    Vydáno v Bioinformatics (15.04.2016)
    “… I here present Fitchi, a new program that produces publication-ready haplotype genealogy graphs based on the Fitch algorithm…”
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    Journal Article
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    Anomaly Detection in Electronic Health Records Across Hospital Networks: Integrating Machine Learning With Graph Algorithms Autor Niu, Haoran, Omitaomu, Olufemi A., Langston, Michael A., Grady, Stephen K., Olama, Mohammed, Ozmen, Ozgur, Klasky, Hilda B., Laurio, Angela, Ward, Merry, Nebeker, Jonathan

    ISSN: 2168-2194, 2168-2208, 2168-2208
    Vydáno: United States IEEE 01.05.2025
    “…In a large hospital system, a network of hospitals relies on electronic health records (EHRs) to make informed decisions regarding their patients in various…”
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    Journal Article
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    Risk stratification and pathway analysis based on graph neural network and interpretable algorithm Autor Liang, Bilin, Gong, Haifan, Lu, Lu, Xu, Jie

    ISSN: 1471-2105, 1471-2105
    Vydáno: London BioMed Central 27.09.2022
    Vydáno v BMC bioinformatics (27.09.2022)
    “… Until now, some pathway-based deep learning models have been developed for bioinformatic analysis, but these models have not fully considered the topological features of pathways, which limits…”
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    Journal Article
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    GCphase: an SNP phasing method using a graph partition and error correction algorithm Autor Luo, Junwei, Wang, Jiayi, Zhai, Haixia, Wang, Junfeng

    ISSN: 1471-2105, 1471-2105
    Vydáno: London BioMed Central 19.08.2024
    Vydáno v BMC bioinformatics (19.08.2024)
    “… Results In this study, we present a graph-based algorithm, GCphase, which utilizes the minimum cut algorithm to perform phasing…”
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    Journal Article
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    WGT: Tools and algorithms for recognizing, visualizing, and generating Wheeler graphs Autor Chao, Kuan-Hao, Chen, Pei-Wei, Seshia, Sanjit A., Langmead, Ben

    ISSN: 2589-0042, 2589-0042
    Vydáno: United States Elsevier Inc 18.08.2023
    Vydáno v iScience (18.08.2023)
    “…A Wheeler graph represents a collection of strings in a way that is particularly easy to index and query…”
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    Journal Article
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    A Novel Adaptive Sliding Observation-Based Cooperative Positioning Algorithm Under Factor Graph Framework for Multiple UUVs Autor Wang, Qingxin, Fan, Shiwei, Zhang, Ya, Gao, Wei, Wei, Jianxiong, Wang, Yanyan

    ISSN: 1551-3203, 1941-0050
    Vydáno: Piscataway IEEE 01.08.2023
    “… Herein, we propose a novel adaptive sliding observation-based cooperative positioning algorithm under the factor graph framework…”
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    Journal Article
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    Graph classification algorithm based on graph structure embedding Autor Ma, Tinghuai, Pan, Qian, Wang, Hongmei, Shao, Wenye, Tian, Yuan, Al-Nabhan, Najla

    ISSN: 0957-4174, 1873-6793
    Vydáno: New York Elsevier Ltd 15.12.2020
    Vydáno v Expert systems with applications (15.12.2020)
    “…•Proposed a graph classification algorithm based on graph embedding. With the application of data mining in many fields such as information science, bioinformatic…”
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    Journal Article
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    TwoPaCo: an efficient algorithm to build the compacted de Bruijn graph from many complete genomes Autor Minkin, Ilia, Pham, Son, Medvedev, Paul

    ISSN: 1367-4803, 1367-4811, 1367-4811
    Vydáno: England 15.12.2017
    Vydáno v Bioinformatics (Oxford, England) (15.12.2017)
    “…). In this article, we present TwoPaCo, a simple and scalable low memory algorithm for the direct construction of the compacted de Bruijn graph from a set of complete genomes…”
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    Journal Article
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    METAMVGL: a multi-view graph-based metagenomic contig binning algorithm by integrating assembly and paired-end graphs Autor Zhang, Zhenmiao, Zhang, Lu

    ISSN: 1471-2105, 1471-2105
    Vydáno: London BioMed Central 22.07.2021
    Vydáno v BMC bioinformatics (22.07.2021)
    “…), where the linked contigs have high chance to be derived from the same clusters. Results We developed METAMVGL, a multi-view graph-based metagenomic contig binning algorithm by integrating both assembly and PE graphs…”
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    Journal Article
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    Bridging semantics and syntax with graph algorithms-state-of-the-art of extracting biomedical relations Autor Luo, Yuan, Uzuner, Özlem, Szolovits, Peter

    ISSN: 1467-5463, 1477-4054
    Vydáno: England Oxford University Press 01.01.2017
    Vydáno v Briefings in bioinformatics (01.01.2017)
    “… Significant progress has been made in algorithm development and resource construction. In particular, graph-based approaches bridge semantics and syntax, often achieving the best performance in shared…”
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    Recycler: an algorithm for detecting plasmids from de novo assembly graphs Autor Rozov, Roye, Brown Kav, Aya, Bogumil, David, Shterzer, Naama, Halperin, Eran, Mizrahi, Itzhak, Shamir, Ron

    ISSN: 1367-4803, 1367-4811, 1367-4811
    Vydáno: England Oxford University Press 15.02.2017
    Vydáno v Bioinformatics (Oxford, England) (15.02.2017)
    “… Here, we attempt to ameliorate this situation by introducing a new circular element assembly algorithm, leveraging assembly graphs provided by a conventional de novo assembler and alignments…”
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    Journal Article
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    A Method to Learn Embedding of a Probabilistic Medical Knowledge Graph: Algorithm Development Autor Li, Linfeng, Wang, Peng, Wang, Yao, Wang, Shenghui, Yan, Jun, Jiang, Jinpeng, Tang, Buzhou, Wang, Chengliang, Liu, Yuting

    ISSN: 2291-9694, 2291-9694
    Vydáno: Canada JMIR Publications 21.05.2020
    Vydáno v JMIR medical informatics (21.05.2020)
    “… Several translation-based algorithms, including TransE, TransH, TransR, TransD, and TranSparse, have been proposed to learn effective embedding vectors from typical knowledge graphs in which the…”
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    Journal Article
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    Essential proteins in cancer networks: a graph-based perspective using Dijkstra’s algorithm Autor Rout, Trilochan, Mohapatra, Anjali, Kar, Madhabananda, Muduly, Dillip Kumar

    ISSN: 2192-6670, 2192-6662, 2192-6670
    Vydáno: Vienna Springer Vienna 19.08.2024
    “… This study introduces a novel graph-based approach to identify essential cancer proteins within PPI networks, focusing on breast, lung, colorectal, and ovarian cancers…”
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    Journal Article
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    AN IMPROVED PATTERN MINING TECHNIQUE FOR GRAPH PATTERN ANALYSIS USING A NOVEL BEHAVIOR OF ARTIFICIAL BEE COLONY ALGORITHM Autor Sahu, Shriya

    ISSN: 0350-5596, 1854-3871
    Vydáno: Ljubljana Slovenian Society Informatika / Slovensko drustvo Informatika 01.07.2021
    Vydáno v Informatica (Ljubljana) (01.07.2021)
    “… Subgraph mining is an area that has gained remarkable attention in the last couple of years to offer an intelligent analysis of more massive graphs and complicated data structures…”
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    BOSS: a novel scaffolding algorithm based on an optimized scaffold graph Autor Luo, Junwei, Wang, Jianxin, Zhang, Zhen, Li, Min, Wu, Fang-Xiang

    ISSN: 1367-4803, 1367-4811, 1367-4811
    Vydáno: England 15.01.2017
    Vydáno v Bioinformatics (Oxford, England) (15.01.2017)
    “… Most existing scaffolding tools adopt scaffold graph approaches. However, due to repetitive regions in genome, sequencing errors and uneven sequencing depth, constructing an accurate scaffold graph is still a challenge task…”
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    A graph-based algorithm for detecting rigid domains in protein structures Autor Dang, Truong Khanh Linh, Nguyen, Thach, Habeck, Michael, Gültas, Mehmet, Waack, Stephan

    ISSN: 1471-2105, 1471-2105
    Vydáno: London BioMed Central 12.02.2021
    Vydáno v BMC bioinformatics (12.02.2021)
    “… Graph clustering algorithms allow us to reduce the graph and run the Viterbi algorithm…”
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    Journal Article