Výsledky vyhledávání - (( (smartened OR state:mn) python code analysis ) OR ( state python code analysis ))*

Combining Astrometry and Elemental Abundances: The Case of the Candidate Pre-Gaia Halo Moving Groups G03-37, G18-39, and G21-22 Autor Schuler, Simon C., Andrews, Jeff J., Clanzy, Vincent R., Mourabit, Mohammed, Chanamé, Julio, Agüeros, Marcel A.

“… Using a new Python code that uses a Bayesian method to self…”
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Minimizing the number of optimizations for efficient community dynamic flux balance analysis Autor Brunner, James D., Chia, Nicholas

“…Dynamic flux balance analysis uses a quasi-steady state assumption to calculate an organism's metabolic activity at each time-step of a dynamic simulation, using the well-known technique of flux balance analysis…”
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Analysis methods and code for very high-precision mass measurements of unstable isotopes Autor Karthein, J., Atanasov, D., Blaum, K., Lunney, D., Manea, V., Mougeot, M.

“…We present a robust analysis code developed in the Python language and incorporating libraries of the ROOT data analysis framework for the state-of-the-art mass spectrometry method called phase…”
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Vespa: Integrated applications for RF pulse design, spectral simulation and MRS data analysis Autor Soher, Brian J., Semanchuk, Philip, Todd, David, Ji, Xiao, Deelchand, Dinesh, Joers, James, Oz, Gulin, Young, Karl

“…Purpose The Vespa package (Versatile Simulation, Pulses, and Analysis) is described and demonstrated…”
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A Study of Large Language Models in Detecting Python Code Violations Autor Mohammed Salih, Hekar A., Sarhan, Qusay I.

“… Common static code analysis tools for Python, such as Pylint and Flake8, are widely used to enforce code quality by detecting coding violations without executing the code…”
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libRoadRunner 2.0: a high performance SBML simulation and analysis library Autor Welsh, Ciaran, Xu, Jin, Smith, Lucian, König, Matthias, Choi, Kiri, Sauro, Herbert M

“…Abstract Motivation This article presents libRoadRunner 2.0, an extensible, high-performance, cross-platform, open-source software library for the simulation and analysis of models expressed using the systems biology markup language (SBML…”
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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python Autor Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary

“…Abstract Motivation Gene set enrichment analysis (GSEA) is a commonly used algorithm for characterizing gene expression changes…”
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PyLAT: Python LAMMPS Analysis Tools Autor Humbert, Michael T, Zhang, Yong, Maginn, Edward J

“… Here we describe a suite of open-source Python-based postprocessing routines we have developed called PyLAT…”
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GPT-4.1 Sets the Standard in Automated Experiment Design Using Novel Python Libraries Autor Fachada, Nuno, Fernandes, Daniel, Fernandes, Carlos M., Ferreira-Saraiva, Bruno D., Matos-Carvalho, João P.

“… unfamiliar Python APIs for complex computational experiments remains poorly characterized. This study systematically benchmarks a selection of state-of-the-art LLMs in generating functional Python code for two increasingly challenging scenarios…”
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Pyteomics—a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics Autor Goloborodko, Anton A., Levitsky, Lev I., Ivanov, Mark V., Gorshkov, Mikhail V.

“…Pyteomics is a cross-platform, open-source Python library providing a rich set of tools for MS-based proteomics…”
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VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres Autor Tsai, Shang-Min, Lyons, James R., Grosheintz, Luc, Rimmer, Paul B., Kitzmann, Daniel, Heng, Kevin

“…We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN…”
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CpGtools: a python package for DNA methylation analysis Autor Wei, Ting, Nie, Jinfu, Larson, Nicholas B, Ye, Zhenqing, Eckel-Passow, Jeanette E, Robertson, Keith D, Kocher, Jean-Pierre A, Wang, Liguo

“…Abstract Motivation DNA methylation can be measured at the single CpG level using sodium bisulfite conversion of genomic DNA followed by sequencing or array…”
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stk: A python toolkit for supramolecular assembly Autor Turcani, Lukas, Berardo, Enrico, Jelfs, Kim E.

“… stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes…”
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MechElastic: A Python library for analysis of mechanical and elastic properties of bulk and 2D materials Autor Singh, Sobhit, Lang, Logan, Dovale-Farelo, Viviana, Herath, Uthpala, Tavadze, Pedram, Coudert, François-Xavier, Romero, Aldo H.

“…The MechElastic Python package evaluates the mechanical and elastic properties of bulk and 2D materials using the elastic coefficient matrix (Cij…”
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scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data Autor Faure, Louis, Soldatov, Ruslan, Kharchenko, Peter V, Adameyko, Igor

“…Abstract Summary scFates provides an extensive toolset for the analysis of dynamic trajectories comprising tree learning, feature association testing, branch differential expression and with a…”
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The fast azimuthal integration Python library: pyFAI Autor Ashiotis, Giannis, Deschildre, Aurore, Nawaz, Zubair, Wright, Jonathan P., Karkoulis, Dimitrios, Picca, Frédéric Emmanuel, Kieffer, Jérôme

“… It is written in Python (with binary submodules for improved performance), a language widely accepted and used by the scientific community today, which enables users to easily incorporate the pyFAI library into their processing pipeline…”
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pyIAST: Ideal adsorbed solution theory (IAST) Python package Autor Simon, Cory M., Smit, Berend, Haranczyk, Maciej

“… We present an open-source, user-friendly Python package, pyIAST, to perform IAST calculations for an arbitrary number of components…”
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PHOTONAI—A Python API for rapid machine learning model development Autor Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim

“…PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development…”
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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods Autor Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli

“… Results In this technical note, we present a new Python implementation of ComBat and ComBat-Seq…”
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Quasiclassical sampling and Wigner sampling of initial vibrational coordinates and momenta for polyatomic molecules in Monte Carlo molecular dynamics simulations Autor Shu, Yinan, Zhou, Jian-Ge, Truhlar, Donald G.

“… molecules, namely, fixed-energy vibrational-state-selected initial conditions and thermal initial conditions…”
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