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Polysaccharide fucoidan BAM1 and arabinogalactan-protein glycan JIM13 antibody binding in sediment cores from coastal vegetated ecosystems

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Název: Polysaccharide fucoidan BAM1 and arabinogalactan-protein glycan JIM13 antibody binding in sediment cores from coastal vegetated ecosystems
Autoři: Hellige, Inga, Akeerath Mundanatt, Aman, Fett, Theresa-Marie, Wölfelschneider, Mirco, Prugger, Jennifer, Geuer, Jana K, Reents, Svenja
Informace o vydavateli: PANGAEA
Rok vydání: 2025
Sbírka: PANGAEA - Data Publisher for Earth & Environmental Science (AWI Bremerhaven / MARUM Bremen)
Témata: Arabinogalactan protein glycan, relative JIM13 antibody signal, carbon dioxide removal, CDRmare, coastal vegetated ecosystems, Colombia, Comment, Country, DAM CDRmare - sea4soCiety: Searching for solutions for Carbon-sequestration in coastal ecosystems, DATE/TIME, DEPTH, sediment/rock, bottom/maximum, top/minimum, Depth comment, Ecosystem, Enzyme-linked immunosorbent assay (ELISA) according to Cornuault et al. (2014), Event label, GER_HAH_SG_P4_SC, GER_HAH_SG_P6_SC, GER_HAH_SG_P8_SC, GER_HAH_SM_P2_SC, GER_HAH_SM_P5_SC, GER_HAH_SM_P7_SC, GER_HAH_UV_P4_SC, GER_HAH_UV_P5_SC, GER_HAH_UV_P6_SC, GER_HEI_SG_P3_SC, GER_HEI_SG_P6_SC, GER_HEI_SG_P8_SC
Geografické téma: MEDIAN LATITUDE: 32.411781 * MEDIAN LONGITUDE: 13.507392 * SOUTH-BOUND LATITUDE: 4.660548 * WEST-BOUND LONGITUDE: -75.682996 * NORTH-BOUND LATITUDE: 54.692271 * EAST-BOUND LONGITUDE: 103.439555 * DATE/TIME START: 2021-11-08T00:00:00 * DATE/TIME END: 2022-10-11T00:00:00 * MINIMUM DEPTH, sediment/rock: 0.007 m * MAXIMUM DEPTH, sediment/rock: 0.485 m
Popis: 50-cm deep sediment cores were taken in saltmarsh, seagrass, mangroves and unvegetated areas around the German Bight, Malaysia and Columbia in 2022 and 2023. Up to 3 points per ecosystem were sampled along a transect, in total 93 cores were analysed. Carbohydrates were sequentially extracted using MilliQ-water and 0.3 M EDTA for later analyses. For more specific analysis enzyme-linked immunosorbent assay (ELISA) was used for detection of fucoidan and arabinogalactan-protein glycan as described in the following studies (Vidal-Melgosa et al., 2021 and Cornuault et al., 2014). In short, 100 µL of sediment extracts were added to a pre-coated 96-well plate and incubated overnight at 4°C. The signal was developed using primary antibodies, BAM1 (fucoidan) and JIM13 (arabinogalactan-protein glycan), diluted 1:10 in skim milk PBS solution, followed by anti-rat antibody at a 1:1000 dilution in the same solution. Absorbance was measured at 450 nm using a Spectramax Id3 plate reader (Molecular Devices).
Druh dokumentu: dataset
Popis souboru: text/tab-separated-values, 3060 data points
Jazyk: English
Relation: Akeerath Mundanatt, Aman; Massing, Jana Chiara; Hehemann, Jan-Hendrik; Hellige, Inga (in prep.): Roots of coastal plants stabilize carbon fixed by marine algae.; Cornuault, Valérie; Manfield, Iain W; Ralet, Marie-Christine; Knox, J Paul (2014): Epitope detection chromatography: a method to dissect the structural heterogeneity and inter-connections of plant cell-wall matrix glycans. Plant Journal, 78(4), 715-722, https://doi.org/10.1111/tpj.12504; Vidal-Melgosa, Silvia; Sichert, Andreas; Francis, T Ben; Bartosik, Daniel; Niggemann, Jutta; Wichels, Antje; Willats, William G T; Fuchs, Bernhard M; Teeling, Hanno; Becher, Dörte; Schweder, Thomas; Amann, Rudolf; Hehemann, Jan-Hendrik (2021): Diatom fucan polysaccharide precipitates carbon during algal blooms. Nature Communications, 12(1), https://doi.org/10.1038/s41467-021-21009-6; https://doi.pangaea.de/10.1594/PANGAEA.979912; https://doi.org/10.1594/PANGAEA.979912
DOI: 10.1594/PANGAEA.979912
Dostupnost: https://doi.pangaea.de/10.1594/PANGAEA.979912
https://doi.org/10.1594/PANGAEA.979912
Rights: CC-BY-4.0: Creative Commons Attribution 4.0 International (License comes into effect after moratorium ends) ; Access constraints: access rights needed ; info:eu-repo/semantics/restrictedAccess
Přístupové číslo: edsbas.BFBFB84A
Databáze: BASE
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  Label: Title
  Group: Ti
  Data: Polysaccharide fucoidan BAM1 and arabinogalactan-protein glycan JIM13 antibody binding in sediment cores from coastal vegetated ecosystems
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AR" term="%22Hellige%2C+Inga%22">Hellige, Inga</searchLink><br /><searchLink fieldCode="AR" term="%22Akeerath+Mundanatt%2C+Aman%22">Akeerath Mundanatt, Aman</searchLink><br /><searchLink fieldCode="AR" term="%22Fett%2C+Theresa-Marie%22">Fett, Theresa-Marie</searchLink><br /><searchLink fieldCode="AR" term="%22Wölfelschneider%2C+Mirco%22">Wölfelschneider, Mirco</searchLink><br /><searchLink fieldCode="AR" term="%22Prugger%2C+Jennifer%22">Prugger, Jennifer</searchLink><br /><searchLink fieldCode="AR" term="%22Geuer%2C+Jana+K%22">Geuer, Jana K</searchLink><br /><searchLink fieldCode="AR" term="%22Reents%2C+Svenja%22">Reents, Svenja</searchLink>
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  Data: PANGAEA
– Name: DatePubCY
  Label: Publication Year
  Group: Date
  Data: 2025
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  Label: Collection
  Group: HoldingsInfo
  Data: PANGAEA - Data Publisher for Earth & Environmental Science (AWI Bremerhaven / MARUM Bremen)
– Name: Subject
  Label: Subject Terms
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  Data: <searchLink fieldCode="DE" term="%22Arabinogalactan+protein+glycan%22">Arabinogalactan protein glycan</searchLink><br /><searchLink fieldCode="DE" term="%22relative+JIM13+antibody+signal%22">relative JIM13 antibody signal</searchLink><br /><searchLink fieldCode="DE" term="%22carbon+dioxide+removal%22">carbon dioxide removal</searchLink><br /><searchLink fieldCode="DE" term="%22CDRmare%22">CDRmare</searchLink><br /><searchLink fieldCode="DE" term="%22coastal+vegetated+ecosystems%22">coastal vegetated ecosystems</searchLink><br /><searchLink fieldCode="DE" term="%22Colombia%22">Colombia</searchLink><br /><searchLink fieldCode="DE" term="%22Comment%22">Comment</searchLink><br /><searchLink fieldCode="DE" term="%22Country%22">Country</searchLink><br /><searchLink fieldCode="DE" term="%22DAM+CDRmare+-+sea4soCiety%3A+Searching+for+solutions+for+Carbon-sequestration+in+coastal+ecosystems%22">DAM CDRmare - sea4soCiety: Searching for solutions for Carbon-sequestration in coastal ecosystems</searchLink><br /><searchLink fieldCode="DE" term="%22DATE%2FTIME%22">DATE/TIME</searchLink><br /><searchLink fieldCode="DE" term="%22DEPTH%22">DEPTH</searchLink><br /><searchLink fieldCode="DE" term="%22sediment%2Frock%22">sediment/rock</searchLink><br /><searchLink fieldCode="DE" term="%22bottom%2Fmaximum%22">bottom/maximum</searchLink><br /><searchLink fieldCode="DE" term="%22top%2Fminimum%22">top/minimum</searchLink><br /><searchLink fieldCode="DE" term="%22Depth+comment%22">Depth comment</searchLink><br /><searchLink fieldCode="DE" term="%22Ecosystem%22">Ecosystem</searchLink><br /><searchLink fieldCode="DE" term="%22Enzyme-linked+immunosorbent+assay+%28ELISA%29+according+to+Cornuault+et+al%2E+%282014%29%22">Enzyme-linked immunosorbent assay (ELISA) according to Cornuault et al. (2014)</searchLink><br /><searchLink fieldCode="DE" term="%22Event+label%22">Event label</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FSG%5FP4%5FSC%22">GER_HAH_SG_P4_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FSG%5FP6%5FSC%22">GER_HAH_SG_P6_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FSG%5FP8%5FSC%22">GER_HAH_SG_P8_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FSM%5FP2%5FSC%22">GER_HAH_SM_P2_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FSM%5FP5%5FSC%22">GER_HAH_SM_P5_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FSM%5FP7%5FSC%22">GER_HAH_SM_P7_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FUV%5FP4%5FSC%22">GER_HAH_UV_P4_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FUV%5FP5%5FSC%22">GER_HAH_UV_P5_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHAH%5FUV%5FP6%5FSC%22">GER_HAH_UV_P6_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHEI%5FSG%5FP3%5FSC%22">GER_HEI_SG_P3_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHEI%5FSG%5FP6%5FSC%22">GER_HEI_SG_P6_SC</searchLink><br /><searchLink fieldCode="DE" term="%22GER%5FHEI%5FSG%5FP8%5FSC%22">GER_HEI_SG_P8_SC</searchLink>
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  Data: <searchLink fieldCode="DE" term="%22MEDIAN+LATITUDE%3A+32%2E411781+*+MEDIAN+LONGITUDE%3A+13%2E507392+*+SOUTH-BOUND+LATITUDE%3A+4%2E660548+*+WEST-BOUND+LONGITUDE%3A+-75%2E682996+*+NORTH-BOUND+LATITUDE%3A+54%2E692271+*+EAST-BOUND+LONGITUDE%3A+103%2E439555+*+DATE%2FTIME+START%3A+2021-11-08T00%3A00%3A00+*+DATE%2FTIME+END%3A+2022-10-11T00%3A00%3A00+*+MINIMUM+DEPTH%22">MEDIAN LATITUDE: 32.411781 * MEDIAN LONGITUDE: 13.507392 * SOUTH-BOUND LATITUDE: 4.660548 * WEST-BOUND LONGITUDE: -75.682996 * NORTH-BOUND LATITUDE: 54.692271 * EAST-BOUND LONGITUDE: 103.439555 * DATE/TIME START: 2021-11-08T00:00:00 * DATE/TIME END: 2022-10-11T00:00:00 * MINIMUM DEPTH</searchLink><br /><searchLink fieldCode="DE" term="%22sediment%2Frock%3A+0%2E007+m+*+MAXIMUM+DEPTH%22">sediment/rock: 0.007 m * MAXIMUM DEPTH</searchLink><br /><searchLink fieldCode="DE" term="%22sediment%2Frock%3A+0%2E485+m%22">sediment/rock: 0.485 m</searchLink>
– Name: Abstract
  Label: Description
  Group: Ab
  Data: 50-cm deep sediment cores were taken in saltmarsh, seagrass, mangroves and unvegetated areas around the German Bight, Malaysia and Columbia in 2022 and 2023. Up to 3 points per ecosystem were sampled along a transect, in total 93 cores were analysed. Carbohydrates were sequentially extracted using MilliQ-water and 0.3 M EDTA for later analyses. For more specific analysis enzyme-linked immunosorbent assay (ELISA) was used for detection of fucoidan and arabinogalactan-protein glycan as described in the following studies (Vidal-Melgosa et al., 2021 and Cornuault et al., 2014). In short, 100 µL of sediment extracts were added to a pre-coated 96-well plate and incubated overnight at 4°C. The signal was developed using primary antibodies, BAM1 (fucoidan) and JIM13 (arabinogalactan-protein glycan), diluted 1:10 in skim milk PBS solution, followed by anti-rat antibody at a 1:1000 dilution in the same solution. Absorbance was measured at 450 nm using a Spectramax Id3 plate reader (Molecular Devices).
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  Data: text/tab-separated-values, 3060 data points
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  Data: English
– Name: NoteTitleSource
  Label: Relation
  Group: SrcInfo
  Data: Akeerath Mundanatt, Aman; Massing, Jana Chiara; Hehemann, Jan-Hendrik; Hellige, Inga (in prep.): Roots of coastal plants stabilize carbon fixed by marine algae.; Cornuault, Valérie; Manfield, Iain W; Ralet, Marie-Christine; Knox, J Paul (2014): Epitope detection chromatography: a method to dissect the structural heterogeneity and inter-connections of plant cell-wall matrix glycans. Plant Journal, 78(4), 715-722, https://doi.org/10.1111/tpj.12504; Vidal-Melgosa, Silvia; Sichert, Andreas; Francis, T Ben; Bartosik, Daniel; Niggemann, Jutta; Wichels, Antje; Willats, William G T; Fuchs, Bernhard M; Teeling, Hanno; Becher, Dörte; Schweder, Thomas; Amann, Rudolf; Hehemann, Jan-Hendrik (2021): Diatom fucan polysaccharide precipitates carbon during algal blooms. Nature Communications, 12(1), https://doi.org/10.1038/s41467-021-21009-6; https://doi.pangaea.de/10.1594/PANGAEA.979912; https://doi.org/10.1594/PANGAEA.979912
– Name: DOI
  Label: DOI
  Group: ID
  Data: 10.1594/PANGAEA.979912
– Name: URL
  Label: Availability
  Group: URL
  Data: https://doi.pangaea.de/10.1594/PANGAEA.979912<br />https://doi.org/10.1594/PANGAEA.979912
– Name: Copyright
  Label: Rights
  Group: Cpyrght
  Data: CC-BY-4.0: Creative Commons Attribution 4.0 International (License comes into effect after moratorium ends) ; Access constraints: access rights needed ; info:eu-repo/semantics/restrictedAccess
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        Value: 10.1594/PANGAEA.979912
    Languages:
      – Text: English
    Subjects:
      – SubjectFull: MEDIAN LATITUDE: 32.411781 * MEDIAN LONGITUDE: 13.507392 * SOUTH-BOUND LATITUDE: 4.660548 * WEST-BOUND LONGITUDE: -75.682996 * NORTH-BOUND LATITUDE: 54.692271 * EAST-BOUND LONGITUDE: 103.439555 * DATE/TIME START: 2021-11-08T00:00:00 * DATE/TIME END: 2022-10-11T00:00:00 * MINIMUM DEPTH
        Type: general
      – SubjectFull: sediment/rock: 0.007 m * MAXIMUM DEPTH
        Type: general
      – SubjectFull: sediment/rock: 0.485 m
        Type: general
      – SubjectFull: Arabinogalactan protein glycan
        Type: general
      – SubjectFull: relative JIM13 antibody signal
        Type: general
      – SubjectFull: carbon dioxide removal
        Type: general
      – SubjectFull: CDRmare
        Type: general
      – SubjectFull: coastal vegetated ecosystems
        Type: general
      – SubjectFull: Colombia
        Type: general
      – SubjectFull: Comment
        Type: general
      – SubjectFull: Country
        Type: general
      – SubjectFull: DAM CDRmare - sea4soCiety: Searching for solutions for Carbon-sequestration in coastal ecosystems
        Type: general
      – SubjectFull: DATE/TIME
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      – SubjectFull: sediment/rock
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      – SubjectFull: bottom/maximum
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      – SubjectFull: top/minimum
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      – SubjectFull: Depth comment
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      – SubjectFull: Ecosystem
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      – SubjectFull: Enzyme-linked immunosorbent assay (ELISA) according to Cornuault et al. (2014)
        Type: general
      – SubjectFull: Event label
        Type: general
      – SubjectFull: GER_HAH_SG_P4_SC
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      – SubjectFull: GER_HAH_SG_P6_SC
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      – SubjectFull: GER_HAH_SG_P8_SC
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      – SubjectFull: GER_HAH_SM_P2_SC
        Type: general
      – SubjectFull: GER_HAH_SM_P5_SC
        Type: general
      – SubjectFull: GER_HAH_SM_P7_SC
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      – SubjectFull: GER_HAH_UV_P4_SC
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      – SubjectFull: GER_HAH_UV_P6_SC
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      – SubjectFull: GER_HEI_SG_P3_SC
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      – SubjectFull: GER_HEI_SG_P6_SC
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      – SubjectFull: GER_HEI_SG_P8_SC
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    Titles:
      – TitleFull: Polysaccharide fucoidan BAM1 and arabinogalactan-protein glycan JIM13 antibody binding in sediment cores from coastal vegetated ecosystems
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