Zobrazit v EDS

Hydrobiid mudsnail image dataset: Raw stereomicroscope, processed, and segmented images of abundant brackish snails from a mesocosm experiment with multiple temperature treatments

Uloženo v:
Podrobná bibliografie
Název: Hydrobiid mudsnail image dataset: Raw stereomicroscope, processed, and segmented images of abundant brackish snails from a mesocosm experiment with multiple temperature treatments
Autoři: MacNeil, Liam, Joly, Léa J, Ito, Maysa, Steinmann, Anna, Drakula, Maja, Wiegand, Hannes, Morsbach, Samuel, Karnatz, Josefine, Scotti, Marco
Informace o vydavateli: PANGAEA
Rok vydání: 2024
Sbírka: PANGAEA - Data Publisher for Earth & Environmental Science (AWI Bremerhaven / MARUM Bremen)
Témata: AWISOM, AWI Sylt Outdoor Mesocosms, Computer vision, DAM sustainMare - iSeal: Trans- and interdisciplinary Social-ecological network analysis based on long-term monitoring, experimental data and stakeholders' assessment, File type, Gastropods, Identification, Image, specimens, specimens (File Size), specimens (MD5 Hash), specimens (Media Type), Image number/name, Image segmentation, iSeal, Magnification, MESO, mesocosm experiment, Method comment, Object Based Image Analysis, Research Mission of the German Marine Research Alliance (DAM): Protection and sustainable use of marine areas, Resolution, Sample code/label, Sampling date/time, experiment, Stereo microscope, Nikon, SMZ18, coupled with Microscope camera
Geografické téma: LATITUDE: 55.022000 * LONGITUDE: 8.438250 * DATE/TIME START: 2022-03-30T00:00:00 * DATE/TIME END: 2022-06-20T00:00:00
Popis: We examined the growth response of a brackish snail (Hydrobiidae) against multiple temperature treatments in a mesocosm located beside the Alfred Wegener Institute Wadden Sea Station on Sylt (55°01′19.2″N, 8°26′17.7″E). Bulk sediments were collected south of Pellworm (54° 31' 55.83"N, 8° 42' 40.36"E) at low tide on March 22, 2022, transferred to mesh-lined crates and introduced to mesocosm tanks (170 cm × 85 cm × 1800 L). Experimental warming treatments were conducted using three heaters per tank (Titanium heater 500 W, Aqua Medic, Bissendorf, Germany). The full specifications for the mesocosms are already published (Pansch et al., 2016). Throughout the experimental warming period, four sampling events (March 30, April 25, May 24, June 20) were conducted to core sediments. Sediment cores were washed and sieved (1mm mesh size) to disaggregate infauna. Individuals were separated for the common hydrobiid mudsnail, which were subsequently imaged in groups on a typical petri plate under stereomicroscopy. A semi-automatic object segmentation and size measurement approach was developed to rapidly differentiate and measure individuals from images. Segmentation was highly accurate and precise against manual length measurements (end-to-end; mm) collected in ImageJ for 4595 snails. Scaling the segmentation method across the full dataset estimated >40,000 snails and presented a complex species-specific response to warming. The enclosed dataset represents all raw, processed, and segmented images (n= 3201) produced by this study.
Druh dokumentu: dataset
Popis souboru: text/tab-separated-values, 44814 data points
Jazyk: English
Relation: MacNeil, Liam; Joly, Léa J; Ito, Maysa; Steinmann, Anna; Mehler, Knut; Scotti, Marco (2024): Sizing mudsnails: Applying superpixels to scale growth detection under ocean warming. Methods in Ecology and Evolution, 15(3), 544-554, https://doi.org/10.1111/2041-210X.14295; Pansch, Andreas; Winde, Vera; Asmus, Ragnhild; Asmus, Harald (2016): Tidal benthic mesocosms simulating future climate change scenarios in the field of marine ecology. Limnology and Oceanography-Methods, 14(4), 257-267, https://doi.org/10.1002/lom3.10086; https://doi.pangaea.de/10.1594/PANGAEA.957929; https://doi.org/10.1594/PANGAEA.957929
DOI: 10.1594/PANGAEA.957929
Dostupnost: https://doi.pangaea.de/10.1594/PANGAEA.957929
https://doi.org/10.1594/PANGAEA.957929
Rights: CC-BY-4.0: Creative Commons Attribution 4.0 International ; Access constraints: unrestricted ; info:eu-repo/semantics/openAccess
Přístupové číslo: edsbas.995F1652
Databáze: BASE
FullText Text:
  Availability: 0
CustomLinks:
  – Url: https://doi.pangaea.de/10.1594/PANGAEA.957929#
    Name: EDS - BASE (s4221598)
    Category: fullText
    Text: View record from BASE
  – Url: https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=EBSCO&SrcAuth=EBSCO&DestApp=WOS&ServiceName=TransferToWoS&DestLinkType=GeneralSearchSummary&Func=Links&author=MacNeil%20L
    Name: ISI
    Category: fullText
    Text: Nájsť tento článok vo Web of Science
    Icon: https://imagesrvr.epnet.com/ls/20docs.gif
    MouseOverText: Nájsť tento článok vo Web of Science
Header DbId: edsbas
DbLabel: BASE
An: edsbas.995F1652
RelevancyScore: 821
AccessLevel: 3
PubType:
PubTypeId: unknown
PreciseRelevancyScore: 820.605651855469
IllustrationInfo
Items – Name: Title
  Label: Title
  Group: Ti
  Data: Hydrobiid mudsnail image dataset: Raw stereomicroscope, processed, and segmented images of abundant brackish snails from a mesocosm experiment with multiple temperature treatments
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AR" term="%22MacNeil%2C+Liam%22">MacNeil, Liam</searchLink><br /><searchLink fieldCode="AR" term="%22Joly%2C+Léa+J%22">Joly, Léa J</searchLink><br /><searchLink fieldCode="AR" term="%22Ito%2C+Maysa%22">Ito, Maysa</searchLink><br /><searchLink fieldCode="AR" term="%22Steinmann%2C+Anna%22">Steinmann, Anna</searchLink><br /><searchLink fieldCode="AR" term="%22Drakula%2C+Maja%22">Drakula, Maja</searchLink><br /><searchLink fieldCode="AR" term="%22Wiegand%2C+Hannes%22">Wiegand, Hannes</searchLink><br /><searchLink fieldCode="AR" term="%22Morsbach%2C+Samuel%22">Morsbach, Samuel</searchLink><br /><searchLink fieldCode="AR" term="%22Karnatz%2C+Josefine%22">Karnatz, Josefine</searchLink><br /><searchLink fieldCode="AR" term="%22Scotti%2C+Marco%22">Scotti, Marco</searchLink>
– Name: Publisher
  Label: Publisher Information
  Group: PubInfo
  Data: PANGAEA
– Name: DatePubCY
  Label: Publication Year
  Group: Date
  Data: 2024
– Name: Subset
  Label: Collection
  Group: HoldingsInfo
  Data: PANGAEA - Data Publisher for Earth & Environmental Science (AWI Bremerhaven / MARUM Bremen)
– Name: Subject
  Label: Subject Terms
  Group: Su
  Data: <searchLink fieldCode="DE" term="%22AWISOM%22">AWISOM</searchLink><br /><searchLink fieldCode="DE" term="%22AWI+Sylt+Outdoor+Mesocosms%22">AWI Sylt Outdoor Mesocosms</searchLink><br /><searchLink fieldCode="DE" term="%22Computer+vision%22">Computer vision</searchLink><br /><searchLink fieldCode="DE" term="%22DAM+sustainMare+-+iSeal%3A+Trans-+and+interdisciplinary+Social-ecological+network+analysis+based+on+long-term+monitoring%22">DAM sustainMare - iSeal: Trans- and interdisciplinary Social-ecological network analysis based on long-term monitoring</searchLink><br /><searchLink fieldCode="DE" term="%22experimental+data+and+stakeholders'+assessment%22">experimental data and stakeholders' assessment</searchLink><br /><searchLink fieldCode="DE" term="%22File+type%22">File type</searchLink><br /><searchLink fieldCode="DE" term="%22Gastropods%22">Gastropods</searchLink><br /><searchLink fieldCode="DE" term="%22Identification%22">Identification</searchLink><br /><searchLink fieldCode="DE" term="%22Image%22">Image</searchLink><br /><searchLink fieldCode="DE" term="%22specimens%22">specimens</searchLink><br /><searchLink fieldCode="DE" term="%22specimens+%28File+Size%29%22">specimens (File Size)</searchLink><br /><searchLink fieldCode="DE" term="%22specimens+%28MD5+Hash%29%22">specimens (MD5 Hash)</searchLink><br /><searchLink fieldCode="DE" term="%22specimens+%28Media+Type%29%22">specimens (Media Type)</searchLink><br /><searchLink fieldCode="DE" term="%22Image+number%2Fname%22">Image number/name</searchLink><br /><searchLink fieldCode="DE" term="%22Image+segmentation%22">Image segmentation</searchLink><br /><searchLink fieldCode="DE" term="%22iSeal%22">iSeal</searchLink><br /><searchLink fieldCode="DE" term="%22Magnification%22">Magnification</searchLink><br /><searchLink fieldCode="DE" term="%22MESO%22">MESO</searchLink><br /><searchLink fieldCode="DE" term="%22mesocosm+experiment%22">mesocosm experiment</searchLink><br /><searchLink fieldCode="DE" term="%22Method+comment%22">Method comment</searchLink><br /><searchLink fieldCode="DE" term="%22Object+Based+Image+Analysis%22">Object Based Image Analysis</searchLink><br /><searchLink fieldCode="DE" term="%22Research+Mission+of+the+German+Marine+Research+Alliance+%28DAM%29%3A+Protection+and+sustainable+use+of+marine+areas%22">Research Mission of the German Marine Research Alliance (DAM): Protection and sustainable use of marine areas</searchLink><br /><searchLink fieldCode="DE" term="%22Resolution%22">Resolution</searchLink><br /><searchLink fieldCode="DE" term="%22Sample+code%2Flabel%22">Sample code/label</searchLink><br /><searchLink fieldCode="DE" term="%22Sampling+date%2Ftime%22">Sampling date/time</searchLink><br /><searchLink fieldCode="DE" term="%22experiment%22">experiment</searchLink><br /><searchLink fieldCode="DE" term="%22Stereo+microscope%22">Stereo microscope</searchLink><br /><searchLink fieldCode="DE" term="%22Nikon%22">Nikon</searchLink><br /><searchLink fieldCode="DE" term="%22SMZ18%22">SMZ18</searchLink><br /><searchLink fieldCode="DE" term="%22coupled+with+Microscope+camera%22">coupled with Microscope camera</searchLink>
– Name: Subject
  Label: Subject Geographic
  Group: Su
  Data: <searchLink fieldCode="DE" term="%22LATITUDE%3A+55%2E022000+*+LONGITUDE%3A+8%2E438250+*+DATE%2FTIME+START%3A+2022-03-30T00%3A00%3A00+*+DATE%2FTIME+END%3A+2022-06-20T00%3A00%3A00%22">LATITUDE: 55.022000 * LONGITUDE: 8.438250 * DATE/TIME START: 2022-03-30T00:00:00 * DATE/TIME END: 2022-06-20T00:00:00</searchLink>
– Name: Abstract
  Label: Description
  Group: Ab
  Data: We examined the growth response of a brackish snail (Hydrobiidae) against multiple temperature treatments in a mesocosm located beside the Alfred Wegener Institute Wadden Sea Station on Sylt (55°01′19.2″N, 8°26′17.7″E). Bulk sediments were collected south of Pellworm (54° 31' 55.83"N, 8° 42' 40.36"E) at low tide on March 22, 2022, transferred to mesh-lined crates and introduced to mesocosm tanks (170 cm × 85 cm × 1800 L). Experimental warming treatments were conducted using three heaters per tank (Titanium heater 500 W, Aqua Medic, Bissendorf, Germany). The full specifications for the mesocosms are already published (Pansch et al., 2016). Throughout the experimental warming period, four sampling events (March 30, April 25, May 24, June 20) were conducted to core sediments. Sediment cores were washed and sieved (1mm mesh size) to disaggregate infauna. Individuals were separated for the common hydrobiid mudsnail, which were subsequently imaged in groups on a typical petri plate under stereomicroscopy. A semi-automatic object segmentation and size measurement approach was developed to rapidly differentiate and measure individuals from images. Segmentation was highly accurate and precise against manual length measurements (end-to-end; mm) collected in ImageJ for 4595 snails. Scaling the segmentation method across the full dataset estimated >40,000 snails and presented a complex species-specific response to warming. The enclosed dataset represents all raw, processed, and segmented images (n= 3201) produced by this study.
– Name: TypeDocument
  Label: Document Type
  Group: TypDoc
  Data: dataset
– Name: Format
  Label: File Description
  Group: SrcInfo
  Data: text/tab-separated-values, 44814 data points
– Name: Language
  Label: Language
  Group: Lang
  Data: English
– Name: NoteTitleSource
  Label: Relation
  Group: SrcInfo
  Data: MacNeil, Liam; Joly, Léa J; Ito, Maysa; Steinmann, Anna; Mehler, Knut; Scotti, Marco (2024): Sizing mudsnails: Applying superpixels to scale growth detection under ocean warming. Methods in Ecology and Evolution, 15(3), 544-554, https://doi.org/10.1111/2041-210X.14295; Pansch, Andreas; Winde, Vera; Asmus, Ragnhild; Asmus, Harald (2016): Tidal benthic mesocosms simulating future climate change scenarios in the field of marine ecology. Limnology and Oceanography-Methods, 14(4), 257-267, https://doi.org/10.1002/lom3.10086; https://doi.pangaea.de/10.1594/PANGAEA.957929; https://doi.org/10.1594/PANGAEA.957929
– Name: DOI
  Label: DOI
  Group: ID
  Data: 10.1594/PANGAEA.957929
– Name: URL
  Label: Availability
  Group: URL
  Data: https://doi.pangaea.de/10.1594/PANGAEA.957929<br />https://doi.org/10.1594/PANGAEA.957929
– Name: Copyright
  Label: Rights
  Group: Cpyrght
  Data: CC-BY-4.0: Creative Commons Attribution 4.0 International ; Access constraints: unrestricted ; info:eu-repo/semantics/openAccess
– Name: AN
  Label: Accession Number
  Group: ID
  Data: edsbas.995F1652
PLink https://erproxy.cvtisr.sk/sfx/access?url=https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edsbas&AN=edsbas.995F1652
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1594/PANGAEA.957929
    Languages:
      – Text: English
    Subjects:
      – SubjectFull: LATITUDE: 55.022000 * LONGITUDE: 8.438250 * DATE/TIME START: 2022-03-30T00:00:00 * DATE/TIME END: 2022-06-20T00:00:00
        Type: general
      – SubjectFull: AWISOM
        Type: general
      – SubjectFull: AWI Sylt Outdoor Mesocosms
        Type: general
      – SubjectFull: Computer vision
        Type: general
      – SubjectFull: DAM sustainMare - iSeal: Trans- and interdisciplinary Social-ecological network analysis based on long-term monitoring
        Type: general
      – SubjectFull: experimental data and stakeholders' assessment
        Type: general
      – SubjectFull: File type
        Type: general
      – SubjectFull: Gastropods
        Type: general
      – SubjectFull: Identification
        Type: general
      – SubjectFull: Image
        Type: general
      – SubjectFull: specimens
        Type: general
      – SubjectFull: specimens (File Size)
        Type: general
      – SubjectFull: specimens (MD5 Hash)
        Type: general
      – SubjectFull: specimens (Media Type)
        Type: general
      – SubjectFull: Image number/name
        Type: general
      – SubjectFull: Image segmentation
        Type: general
      – SubjectFull: iSeal
        Type: general
      – SubjectFull: Magnification
        Type: general
      – SubjectFull: MESO
        Type: general
      – SubjectFull: mesocosm experiment
        Type: general
      – SubjectFull: Method comment
        Type: general
      – SubjectFull: Object Based Image Analysis
        Type: general
      – SubjectFull: Research Mission of the German Marine Research Alliance (DAM): Protection and sustainable use of marine areas
        Type: general
      – SubjectFull: Resolution
        Type: general
      – SubjectFull: Sample code/label
        Type: general
      – SubjectFull: Sampling date/time
        Type: general
      – SubjectFull: experiment
        Type: general
      – SubjectFull: Stereo microscope
        Type: general
      – SubjectFull: Nikon
        Type: general
      – SubjectFull: SMZ18
        Type: general
      – SubjectFull: coupled with Microscope camera
        Type: general
    Titles:
      – TitleFull: Hydrobiid mudsnail image dataset: Raw stereomicroscope, processed, and segmented images of abundant brackish snails from a mesocosm experiment with multiple temperature treatments
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: MacNeil, Liam
      – PersonEntity:
          Name:
            NameFull: Joly, Léa J
      – PersonEntity:
          Name:
            NameFull: Ito, Maysa
      – PersonEntity:
          Name:
            NameFull: Steinmann, Anna
      – PersonEntity:
          Name:
            NameFull: Drakula, Maja
      – PersonEntity:
          Name:
            NameFull: Wiegand, Hannes
      – PersonEntity:
          Name:
            NameFull: Morsbach, Samuel
      – PersonEntity:
          Name:
            NameFull: Karnatz, Josefine
      – PersonEntity:
          Name:
            NameFull: Scotti, Marco
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 01
              M: 01
              Type: published
              Y: 2024
          Identifiers:
            – Type: issn-locals
              Value: edsbas
ResultId 1