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Seawater carbonate chemistry and seasonal net calcification by secondary calcifiers in coral reefs of the Eastern Tropical Pacific Ocean

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Title: Seawater carbonate chemistry and seasonal net calcification by secondary calcifiers in coral reefs of the Eastern Tropical Pacific Ocean
Authors: Orrante-Alcaraz, Jessica M, Carballo, José Luis, Yáñez, Benjamín
Publisher Information: PANGAEA
Publication Year: 2023
Collection: PANGAEA - Data Publisher for Earth & Environmental Science (AWI Bremerhaven / MARUM Bremen)
Subject Terms: Alkalinity, total, Aragonite saturation state, Bahia_Tiburon, Benthos, Bicarbonate ion, Calcification/Dissolution, Calcification rate, Calcite saturation state, Calculated using CO2SYS, Calculated using seacarb after Nisumaa et al. (2010), Carbon, inorganic, dissolved, Carbonate ion, Carbonate system computation flag, Carbon dioxide, Coast and continental shelf, Code, Community composition and diversity, Coverage, Entire community, Event label, EXP, Experiment, Field observation, Fugacity of carbon dioxide (water) at sea surface temperature (wet air), Las_Monas, Microhabitat, North Pacific
Subject Geographic: MEDIAN LATITUDE: 21.862500 * MEDIAN LONGITUDE: -105.897050 * SOUTH-BOUND LATITUDE: 21.850000 * WEST-BOUND LONGITUDE: -105.915000 * NORTH-BOUND LATITUDE: 21.875000 * EAST-BOUND LONGITUDE: -105.879100
Description: This study assesses whether secondary calcification is driven by a contrasting seasonal pattern (rainy vs dry) that occurs in the Eastern Tropical Pacific (ETP). Secondary calcifiers net calcification rates and coverage were measured in two reefs: the semi-enclosed Bahía Tiburón reef (BT [21°52′30 “N, 105°54/54 “W]) and the open Las Monas fringing reef (LM [21°51ʹ00ʹʹN, 105°52ʹ45ʹʹW]). Measurements were made from 2013 to 2016 using Calcification Accretion Units (CAUs). Seawater temperature, illuminance, pCO2, pH, ΩCa, and ΩAr were also measured. Low means of pCO2, and high means of ΩCa and ΩAr, were measured during the rainy season. At Las Monas, the composition of the calcifier community differed between seasons. A seasonal effect on net calcification was recorded in the semi-enclosed reef and in the exposed microhabitat of both reefs. Overall, net calcification (mean ± SD) was 1.17 ± 1.13 g·CaCO3·m−2·day−1. Calcification in the open fringing reef (1.51 ± 1.32 g·CaCO3·m−2·day−1) was almost double that in the semi-enclosed reef (0.83 ± 0.78 g·CaCO3·m−2·day−1). Calcification also decreased dramatically between 2014 (1.57 g·CaCO3·m−2·day−1) and 2016 (0.99 g·CaCO3·m−2·day−1). The ENSO event of 2015 raised the water temperature almost 1 °C above the decadal average, which led to a mass coral bleaching in both reefs. That thermal stress might explain the calcification decline in 2015–2016, but probably also obscured a clearer seasonal pattern in net calcification. This study is the first to show that anomalous and persistent high seawater temperatures can affect carbonate production by secondary calcifiers.
Document Type: dataset
File Description: text/tab-separated-values, 18504 data points
Language: English
Relation: Orrante-Alcaraz, Jessica M; Carballo, José Luis; Yáñez, Benjamín (2023): Seasonal net calcification by secondary calcifiers in coral reefs of the Eastern Tropical Pacific Ocean. Marine Biology, 170(2), 16, https://doi.org/10.1007/s00227-022-04158-0; Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html; Monthly temperature and daily temperature (obtained by hobo water data logger) (URI: https://download.pangaea.de/reference/118985/attachments/Monthly_and_daily_temperature.xlsx); https://doi.pangaea.de/10.1594/PANGAEA.960042; https://doi.org/10.1594/PANGAEA.960042
DOI: 10.1594/PANGAEA.960042
Availability: https://doi.pangaea.de/10.1594/PANGAEA.960042
https://doi.org/10.1594/PANGAEA.960042
Rights: CC-BY-4.0: Creative Commons Attribution 4.0 International ; Access constraints: unrestricted ; info:eu-repo/semantics/openAccess
Accession Number: edsbas.8D7111BA
Database: BASE
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  – Url: https://doi.pangaea.de/10.1594/PANGAEA.960042#
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Items – Name: Title
  Label: Title
  Group: Ti
  Data: Seawater carbonate chemistry and seasonal net calcification by secondary calcifiers in coral reefs of the Eastern Tropical Pacific Ocean
– Name: Author
  Label: Authors
  Group: Au
  Data: <searchLink fieldCode="AR" term="%22Orrante-Alcaraz%2C+Jessica+M%22">Orrante-Alcaraz, Jessica M</searchLink><br /><searchLink fieldCode="AR" term="%22Carballo%2C+José+Luis%22">Carballo, José Luis</searchLink><br /><searchLink fieldCode="AR" term="%22Yáñez%2C+Benjamín%22">Yáñez, Benjamín</searchLink>
– Name: Publisher
  Label: Publisher Information
  Group: PubInfo
  Data: PANGAEA
– Name: DatePubCY
  Label: Publication Year
  Group: Date
  Data: 2023
– Name: Subset
  Label: Collection
  Group: HoldingsInfo
  Data: PANGAEA - Data Publisher for Earth & Environmental Science (AWI Bremerhaven / MARUM Bremen)
– Name: Subject
  Label: Subject Terms
  Group: Su
  Data: <searchLink fieldCode="DE" term="%22Alkalinity%22">Alkalinity</searchLink><br /><searchLink fieldCode="DE" term="%22total%22">total</searchLink><br /><searchLink fieldCode="DE" term="%22Aragonite+saturation+state%22">Aragonite saturation state</searchLink><br /><searchLink fieldCode="DE" term="%22Bahia%5FTiburon%22">Bahia_Tiburon</searchLink><br /><searchLink fieldCode="DE" term="%22Benthos%22">Benthos</searchLink><br /><searchLink fieldCode="DE" term="%22Bicarbonate+ion%22">Bicarbonate ion</searchLink><br /><searchLink fieldCode="DE" term="%22Calcification%2FDissolution%22">Calcification/Dissolution</searchLink><br /><searchLink fieldCode="DE" term="%22Calcification+rate%22">Calcification rate</searchLink><br /><searchLink fieldCode="DE" term="%22Calcite+saturation+state%22">Calcite saturation state</searchLink><br /><searchLink fieldCode="DE" term="%22Calculated+using+CO2SYS%22">Calculated using CO2SYS</searchLink><br /><searchLink fieldCode="DE" term="%22Calculated+using+seacarb+after+Nisumaa+et+al%2E+%282010%29%22">Calculated using seacarb after Nisumaa et al. (2010)</searchLink><br /><searchLink fieldCode="DE" term="%22Carbon%22">Carbon</searchLink><br /><searchLink fieldCode="DE" term="%22inorganic%22">inorganic</searchLink><br /><searchLink fieldCode="DE" term="%22dissolved%22">dissolved</searchLink><br /><searchLink fieldCode="DE" term="%22Carbonate+ion%22">Carbonate ion</searchLink><br /><searchLink fieldCode="DE" term="%22Carbonate+system+computation+flag%22">Carbonate system computation flag</searchLink><br /><searchLink fieldCode="DE" term="%22Carbon+dioxide%22">Carbon dioxide</searchLink><br /><searchLink fieldCode="DE" term="%22Coast+and+continental+shelf%22">Coast and continental shelf</searchLink><br /><searchLink fieldCode="DE" term="%22Code%22">Code</searchLink><br /><searchLink fieldCode="DE" term="%22Community+composition+and+diversity%22">Community composition and diversity</searchLink><br /><searchLink fieldCode="DE" term="%22Coverage%22">Coverage</searchLink><br /><searchLink fieldCode="DE" term="%22Entire+community%22">Entire community</searchLink><br /><searchLink fieldCode="DE" term="%22Event+label%22">Event label</searchLink><br /><searchLink fieldCode="DE" term="%22EXP%22">EXP</searchLink><br /><searchLink fieldCode="DE" term="%22Experiment%22">Experiment</searchLink><br /><searchLink fieldCode="DE" term="%22Field+observation%22">Field observation</searchLink><br /><searchLink fieldCode="DE" term="%22Fugacity+of+carbon+dioxide+%28water%29+at+sea+surface+temperature+%28wet+air%29%22">Fugacity of carbon dioxide (water) at sea surface temperature (wet air)</searchLink><br /><searchLink fieldCode="DE" term="%22Las%5FMonas%22">Las_Monas</searchLink><br /><searchLink fieldCode="DE" term="%22Microhabitat%22">Microhabitat</searchLink><br /><searchLink fieldCode="DE" term="%22North+Pacific%22">North Pacific</searchLink>
– Name: Subject
  Label: Subject Geographic
  Group: Su
  Data: <searchLink fieldCode="DE" term="%22MEDIAN+LATITUDE%3A+21%2E862500+*+MEDIAN+LONGITUDE%3A+-105%2E897050+*+SOUTH-BOUND+LATITUDE%3A+21%2E850000+*+WEST-BOUND+LONGITUDE%3A+-105%2E915000+*+NORTH-BOUND+LATITUDE%3A+21%2E875000+*+EAST-BOUND+LONGITUDE%3A+-105%2E879100%22">MEDIAN LATITUDE: 21.862500 * MEDIAN LONGITUDE: -105.897050 * SOUTH-BOUND LATITUDE: 21.850000 * WEST-BOUND LONGITUDE: -105.915000 * NORTH-BOUND LATITUDE: 21.875000 * EAST-BOUND LONGITUDE: -105.879100</searchLink>
– Name: Abstract
  Label: Description
  Group: Ab
  Data: This study assesses whether secondary calcification is driven by a contrasting seasonal pattern (rainy vs dry) that occurs in the Eastern Tropical Pacific (ETP). Secondary calcifiers net calcification rates and coverage were measured in two reefs: the semi-enclosed Bahía Tiburón reef (BT [21°52′30 “N, 105°54/54 “W]) and the open Las Monas fringing reef (LM [21°51ʹ00ʹʹN, 105°52ʹ45ʹʹW]). Measurements were made from 2013 to 2016 using Calcification Accretion Units (CAUs). Seawater temperature, illuminance, pCO2, pH, ΩCa, and ΩAr were also measured. Low means of pCO2, and high means of ΩCa and ΩAr, were measured during the rainy season. At Las Monas, the composition of the calcifier community differed between seasons. A seasonal effect on net calcification was recorded in the semi-enclosed reef and in the exposed microhabitat of both reefs. Overall, net calcification (mean ± SD) was 1.17 ± 1.13 g·CaCO3·m−2·day−1. Calcification in the open fringing reef (1.51 ± 1.32 g·CaCO3·m−2·day−1) was almost double that in the semi-enclosed reef (0.83 ± 0.78 g·CaCO3·m−2·day−1). Calcification also decreased dramatically between 2014 (1.57 g·CaCO3·m−2·day−1) and 2016 (0.99 g·CaCO3·m−2·day−1). The ENSO event of 2015 raised the water temperature almost 1 °C above the decadal average, which led to a mass coral bleaching in both reefs. That thermal stress might explain the calcification decline in 2015–2016, but probably also obscured a clearer seasonal pattern in net calcification. This study is the first to show that anomalous and persistent high seawater temperatures can affect carbonate production by secondary calcifiers.
– Name: TypeDocument
  Label: Document Type
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  Data: dataset
– Name: Format
  Label: File Description
  Group: SrcInfo
  Data: text/tab-separated-values, 18504 data points
– Name: Language
  Label: Language
  Group: Lang
  Data: English
– Name: NoteTitleSource
  Label: Relation
  Group: SrcInfo
  Data: Orrante-Alcaraz, Jessica M; Carballo, José Luis; Yáñez, Benjamín (2023): Seasonal net calcification by secondary calcifiers in coral reefs of the Eastern Tropical Pacific Ocean. Marine Biology, 170(2), 16, https://doi.org/10.1007/s00227-022-04158-0; Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html; Monthly temperature and daily temperature (obtained by hobo water data logger) (URI: https://download.pangaea.de/reference/118985/attachments/Monthly_and_daily_temperature.xlsx); https://doi.pangaea.de/10.1594/PANGAEA.960042; https://doi.org/10.1594/PANGAEA.960042
– Name: DOI
  Label: DOI
  Group: ID
  Data: 10.1594/PANGAEA.960042
– Name: URL
  Label: Availability
  Group: URL
  Data: https://doi.pangaea.de/10.1594/PANGAEA.960042<br />https://doi.org/10.1594/PANGAEA.960042
– Name: Copyright
  Label: Rights
  Group: Cpyrght
  Data: CC-BY-4.0: Creative Commons Attribution 4.0 International ; Access constraints: unrestricted ; info:eu-repo/semantics/openAccess
– Name: AN
  Label: Accession Number
  Group: ID
  Data: edsbas.8D7111BA
PLink https://erproxy.cvtisr.sk/sfx/access?url=https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=edsbas&AN=edsbas.8D7111BA
RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1594/PANGAEA.960042
    Languages:
      – Text: English
    Subjects:
      – SubjectFull: MEDIAN LATITUDE: 21.862500 * MEDIAN LONGITUDE: -105.897050 * SOUTH-BOUND LATITUDE: 21.850000 * WEST-BOUND LONGITUDE: -105.915000 * NORTH-BOUND LATITUDE: 21.875000 * EAST-BOUND LONGITUDE: -105.879100
        Type: general
      – SubjectFull: Alkalinity
        Type: general
      – SubjectFull: total
        Type: general
      – SubjectFull: Aragonite saturation state
        Type: general
      – SubjectFull: Bahia_Tiburon
        Type: general
      – SubjectFull: Benthos
        Type: general
      – SubjectFull: Bicarbonate ion
        Type: general
      – SubjectFull: Calcification/Dissolution
        Type: general
      – SubjectFull: Calcification rate
        Type: general
      – SubjectFull: Calcite saturation state
        Type: general
      – SubjectFull: Calculated using CO2SYS
        Type: general
      – SubjectFull: Calculated using seacarb after Nisumaa et al. (2010)
        Type: general
      – SubjectFull: Carbon
        Type: general
      – SubjectFull: inorganic
        Type: general
      – SubjectFull: dissolved
        Type: general
      – SubjectFull: Carbonate ion
        Type: general
      – SubjectFull: Carbonate system computation flag
        Type: general
      – SubjectFull: Carbon dioxide
        Type: general
      – SubjectFull: Coast and continental shelf
        Type: general
      – SubjectFull: Code
        Type: general
      – SubjectFull: Community composition and diversity
        Type: general
      – SubjectFull: Coverage
        Type: general
      – SubjectFull: Entire community
        Type: general
      – SubjectFull: Event label
        Type: general
      – SubjectFull: EXP
        Type: general
      – SubjectFull: Experiment
        Type: general
      – SubjectFull: Field observation
        Type: general
      – SubjectFull: Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
        Type: general
      – SubjectFull: Las_Monas
        Type: general
      – SubjectFull: Microhabitat
        Type: general
      – SubjectFull: North Pacific
        Type: general
    Titles:
      – TitleFull: Seawater carbonate chemistry and seasonal net calcification by secondary calcifiers in coral reefs of the Eastern Tropical Pacific Ocean
        Type: main
  BibRelationships:
    HasContributorRelationships:
      – PersonEntity:
          Name:
            NameFull: Orrante-Alcaraz, Jessica M
      – PersonEntity:
          Name:
            NameFull: Carballo, José Luis
      – PersonEntity:
          Name:
            NameFull: Yáñez, Benjamín
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          Dates:
            – D: 01
              M: 01
              Type: published
              Y: 2023
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              Value: edsbas
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