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Use of historic metabolic biotransformation data asa means of anticipating metabolic sites usingMetaPrint2D and Bioclipse.

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Název: Use of historic metabolic biotransformation data asa means of anticipating metabolic sites usingMetaPrint2D and Bioclipse.
Autoři: Carlsson, Lars, Spjuth, Ola, Adams, Samuel, Glen, Robert C., Boyer, Scott
Zdroj: BMC Bioinformatics; 2010, Vol. 11, p362-368, 7p
Témata: BIOTRANSFORMATION (Metabolism), CHEMICAL structure, COORDINATION compounds, DATA analysis, CONSTITUTION of matter
Abstrakt: Background: Predicting metabolic sites is important in the drug discovery process to aid in rapid compound optimisation. No interactive tool exists and most of the useful tools are quite expensive. Results: Here a fast and reliable method to analyse ligands and visualise potential metabolic sites is presented which is based on annotated metabolic data, described by circular fingerprints. The method is available via the graphical workbench Bioclipse, which is equipped with advanced features in cheminformatics. Conclusions: Due to the speed of predictions (less than 50 ms per molecule), scientists can get real time decision support when editing chemical structures. Bioclipse is a rich client, which means that all calculations are performed on the local computer and do not require network connection. Bioclipse and MetaPrint2D are free for all users, released under open source licenses, and available from http://www.bioclipse.net. [ABSTRACT FROM AUTHOR]
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Databáze: Complementary Index
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Abstrakt:Background: Predicting metabolic sites is important in the drug discovery process to aid in rapid compound optimisation. No interactive tool exists and most of the useful tools are quite expensive. Results: Here a fast and reliable method to analyse ligands and visualise potential metabolic sites is presented which is based on annotated metabolic data, described by circular fingerprints. The method is available via the graphical workbench Bioclipse, which is equipped with advanced features in cheminformatics. Conclusions: Due to the speed of predictions (less than 50 ms per molecule), scientists can get real time decision support when editing chemical structures. Bioclipse is a rich client, which means that all calculations are performed on the local computer and do not require network connection. Bioclipse and MetaPrint2D are free for all users, released under open source licenses, and available from http://www.bioclipse.net. [ABSTRACT FROM AUTHOR]
ISSN:14712105
DOI:10.1186/1471-2105-11-362