Synteny plot quality control with SyntenyQC.
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| Title: | Synteny plot quality control with SyntenyQC. |
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| Authors: | Kirkwood, Timothy D J, Connolly, Jack A, Ang, Ee Lui, Zhao, Huimin, Takano, Eriko, Breitling, Rainer |
| Source: | Bioinformatics; Dec2025, Vol. 41 Issue 12, p1-5, 5p |
| Subject Terms: | GENOMICS, BIOINFORMATICS software, GENE mapping, APPLICATION software, PYTHON programming language, DATA scrubbing |
| Abstract: | Summary SyntenyQC is a data pre-processing tool for the construction of synteny plots. It supports genomic data collection, annotation and dereplication to facilitate (and in some cases fundamentally enable) the construction of informative synteny plots. Availability and implementation SyntenyQC is a command line app developed using Python version 3.10 and tested using pytest. SyntenyQC is available on PyPI (https://pypi.org/project/SyntenyQC) under the MIT License, along with a detailed user tutorial. Package tests can be viewed at https://github.com/Tim-Kirkwood/SyntenyQC. [ABSTRACT FROM AUTHOR] |
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| Database: | Complementary Index |
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