Search Results - standalone python code~

The format of FEM output. We list only those fields which are used by BlueRecording.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/journal_contribution/The_format_of_FEM_output_We_list_only_those_fields_which_are_used_by_BlueRecording_/29138112

Availability: https://doi.org/10.1371/journal.pcbi.1013023.s005
https://figshare.com/articles/journal_contribution/The_format_of_FEM_output_We_list_only_those_fields_which_are_used_by_BlueRecording_/29138112

Methods for the generation of finite element meshes and simulation of electric fields.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/journal_contribution/Methods_for_the_generation_of_finite_element_meshes_and_simulation_of_electric_fields_/29138100

Availability: https://doi.org/10.1371/journal.pcbi.1013023.s001
https://figshare.com/articles/journal_contribution/Methods_for_the_generation_of_finite_element_meshes_and_simulation_of_electric_fields_/29138100

Methods for the input of current or conductance noise to the model.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/journal_contribution/Methods_for_the_input_of_current_or_conductance_noise_to_the_model_/29138103

Availability: https://doi.org/10.1371/journal.pcbi.1013023.s002
https://figshare.com/articles/journal_contribution/Methods_for_the_input_of_current_or_conductance_noise_to_the_model_/29138103

Anna: an open-source platform for real-time integration of machine learning classifiers with veterinary electronic health records.

Authors: Kong, Chun Yin Vasquez, Picasso Farhoodimoghadam, Makan et al.

Source: BMC Veterinary Research. 10/2/2025, Vol. 21 Issue 1, p1-12. 12p.

Subjects: Machine learning, Electronic health records, Open source software, Patient care, Veterinary medicine, Diagnosis, Classification algorithms, Synchronization

The format of the simulation reports

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/dataset/The_format_of_the_simulation_reports/29138142

Availability: https://doi.org/10.1371/journal.pcbi.1013023.t003
https://figshare.com/articles/dataset/The_format_of_the_simulation_reports/29138142

Comparison of BlueRecording with existing tools

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/dataset/Comparison_of_BlueRecording_with_existing_tools/29138145

Availability: https://doi.org/10.1371/journal.pcbi.1013023.t004
https://figshare.com/articles/dataset/Comparison_of_BlueRecording_with_existing_tools/29138145

The format of the weights file

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/dataset/The_format_of_the_weights_file/29138136

Availability: https://doi.org/10.1371/journal.pcbi.1013023.t001
https://figshare.com/articles/dataset/The_format_of_the_weights_file/29138136

The format of the electrode csv file

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/dataset/The_format_of_the_electrode_csv_file/29138139

Availability: https://doi.org/10.1371/journal.pcbi.1013023.t002
https://figshare.com/articles/dataset/The_format_of_the_electrode_csv_file/29138139

Simplified calculation methods produce inaccurate signals.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/figure/Simplified_calculation_methods_produce_inaccurate_signals_/29138127

Availability: https://doi.org/10.1371/journal.pcbi.1013023.g005
https://figshare.com/articles/figure/Simplified_calculation_methods_produce_inaccurate_signals_/29138127

BlueRecording simulates whisker-flick EEG.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Availability: https://doi.org/10.1371/journal.pcbi.1013023.g006
https://figshare.com/articles/figure/BlueRecording_simulates_whisker-flick_EEG_/29138130

Differences in compartment weights explain differences between EEG and ECoG.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/figure/Differences_in_compartment_weights_explain_differences_between_EEG_and_ECoG_/29138124

Availability: https://doi.org/10.1371/journal.pcbi.1013023.g004
https://figshare.com/articles/figure/Differences_in_compartment_weights_explain_differences_between_EEG_and_ECoG_/29138124

BlueRecording simulates resting-state EEG in the rat SSCx model.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Availability: https://doi.org/10.1371/journal.pcbi.1013023.g003
https://figshare.com/articles/figure/BlueRecording_simulates_resting-state_EEG_in_the_rat_SSCx_model_/29138121

Workflow for the BlueRecording Pipeline.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/figure/Workflow_for_the_BlueRecording_Pipeline_/29138115

Availability: https://doi.org/10.1371/journal.pcbi.1013023.g001
https://figshare.com/articles/figure/Workflow_for_the_BlueRecording_Pipeline_/29138115

BlueRecording simulates hippocampal LFP.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/figure/BlueRecording_simulates_hippocampal_LFP_/29138133

Availability: https://doi.org/10.1371/journal.pcbi.1013023.g007
https://figshare.com/articles/figure/BlueRecording_simulates_hippocampal_LFP_/29138133

A. E-Field magnitude, in a cross section of the rat head, induced by current applied to an ECoG recording electrode.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Availability: https://doi.org/10.1371/journal.pcbi.1013023.s004
https://figshare.com/articles/figure/A_E-Field_magnitude_in_a_cross_section_of_the_rat_head_induced_by_current_applied_to_an_ECoG_recording_electrode_/29138109

Capabilities of Large Language Models in Generating Complex Code : Comparing Code Generation Capabilities of Two Large Language Models: A Software Architecture Perspective

Additional Titles: Stora språkmodellers förmåga att generera komplex kod : Jämförelse av två stora språkmodellers förmåga att generera kod med avseende på mjukvaruarkitektur

Authors: Formgren, Björn

Index Terms: Large Language Models, Code generation, Software architecture, Cohesion, Cyclomatic complexity, ClassEval, HumanEval, Computer Sciences, Datavetenskap (datalogi), Computer Engineering, Datorteknik, Computer and Information Sciences, Data- och informationsvetenskap, Student thesis, info:eu-repo/semantics/bachelorThesis, text

URL: http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-352307
TRITA-EECS-EX ; 2024:497

Extracellular signals recorded in a large homogeneous medium.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/figure/Extracellular_signals_recorded_in_a_large_homogeneous_medium_/29138118

Availability: https://doi.org/10.1371/journal.pcbi.1013023.g002
https://figshare.com/articles/figure/Extracellular_signals_recorded_in_a_large_homogeneous_medium_/29138118

Procedure for aligning the NeuroRat head model underlying the FEM simulations with the BBP circuit model.

Authors: Joseph James Tharayil Jorge Blanco Alonso Silvia Farcito et al.

Subject Terms: Biophysics, Cell Biology, Genetics, Neuroscience, Physiology, Biotechnology, Evolutionary Biology, Developmental Biology, Cancer, Space Science, Biological Sciences not elsewhere classified, Mathematical Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Information Systems not elsewhere classified, standalone python code, sonata data format, rat somatosensory cortex, new avenues open, network simulations accessible, coreneuron computation engine, computational neuroscience grows, complex tissue anatomy, permit online calculation, signal information content, e ., non, simulate eeg recordings, enable efficient calculation, div >< p, dipolar current sources

Relation: https://figshare.com/articles/figure/Procedure_for_aligning_the_NeuroRat_head_model_underlying_the_FEM_simulations_with_the_BBP_circuit_model_/29138106

Availability: https://doi.org/10.1371/journal.pcbi.1013023.s003
https://figshare.com/articles/figure/Procedure_for_aligning_the_NeuroRat_head_model_underlying_the_FEM_simulations_with_the_BBP_circuit_model_/29138106

Escalating LLM-based Code Translation Benchmarking into the Class-level Era

Authors: Xue, Pengyu Wu, Linhao Yang, Zhen et al.

Index Terms: Computer Science - Software Engineering, text

URL: http://arxiv.org/abs/2411.06145

Nirjas: An open source framework for extracting metadata from the source code

Authors: Bhardwaj, Ayush Sahil Pratap, Kaushlendra et al.

Index Terms: Computer Science - Software Engineering, Computer Science - Information Retrieval, text

URL: http://arxiv.org/abs/2409.14609