Search Results - path consistency algorithm based on conditional mutual information

Inferring Gene Regulatory Networks via Ensemble Path Consistency Algorithm Based on Conditional Mutual Information

Authors: Jie Xu Guanxue Yang Guohai Liu et al.

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 20:1807-1816

Subject Terms: Principal Component Analysis, 0206 medical engineering, Computational Biology, Gene Regulatory Networks, 02 engineering and technology, Algorithms

Access URL: https://pubmed.ncbi.nlm.nih.gov/36346850

Inference of Gene Regulatory Networks with Local Lasso Path Consistency Algorithm Based on Conditional Mutual Information

Authors: Guanxue Yang Chunnian Wang Guanxiao Yang

Source: 2022 13th Asian Control Conference (ASCC). :1977-1982

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences

Inferring gene regulatory network using path consistency algorithm based on conditional mutual information and genetic algorithm

Authors: Sima Iranmanesh Vahid Sattari-Naeini Behnam Ghavami

Source: 2017 7th International Conference on Computer and Knowledge Engineering (ICCKE). :98-103

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, 3. Good health

Access URL: http://ieeexplore.ieee.org/document/8167936/

Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information

Authors: Zhang, Xiujun Zhao, Xing-Ming He, Kun et al.

Contributors: Zhang, Xiujun Zhao, Xing-Ming He, Kun et al.

Source: Bioinformatics. 28:98-104

Subject Terms: 0301 basic medicine, Principal Component Analysis, 03 medical and health sciences, Gene Expression Profiling, 0206 medical engineering, Escherichia coli, Gene Regulatory Networks, 02 engineering and technology, [INFO] Computer Science [cs], SOS Response, Genetics, Algorithms, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]

Access URL: https://academic.oup.com/bioinformatics/article-pdf/28/1/98/16903705/btr626.pdf
https://pubmed.ncbi.nlm.nih.gov/22088843

Construction of Gene Regulatory Networks by Path Consistency Algorithm Based on Node Ordering and Conditional Mutual Information

Authors: Pan Liu Wei Deng

Source: Acta Biophysica Sinica. 29:73

Access URL: http://pub.chinasciencejournal.com/article/getArticleRedirect.action?doiCode=10.3724/SP.J.1260.2012.20126

GAEM: Genetic Algorithm based Expectation-Maximization for inferring Gene Regulatory Networks from incomplete data: Genetic Algorithm based Expectation-Maximization for inferring Gene Regulatory Networks from incomplete data

Authors: Parisa Niloofar Rosa Aghdam Changiz Eslahchi

Source: Computers in Biology and Medicine. 183:109238

Subject Terms: Bayesian network, Gene Regulatory Network, Genetic algorithm, Models, Genetic, Gene Expression Profiling, Databases, Genetic, Conditional Mutual Information, Humans, Computational Biology, Expectation-Maximization, Missing values, Gene Regulatory Networks, Algorithms

Access URL: https://pubmed.ncbi.nlm.nih.gov/39426072
https://portal.findresearcher.sdu.dk/da/publications/eb6b9cb6-ec44-465b-8725-c15ef409578c
https://doi.org/10.1016/j.compbiomed.2024.109238

Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.

Authors: Zhang, Xiujun Zhao, Xing-Ming He, Kun et al.

Source: Bioinformatics; Jan2012, Vol. 28 Issue 1, p98-104, 7p

Subject Terms: GENETIC regulation, GAUSSIAN distribution, ALGORITHMS, COMPUTATIONAL biology, RECEIVER operating characteristic curves

Reverse Engineering Gene Regulatory Networks Based on Dynamic Threshold Condition Mutual Information With Resampling Strategy

Authors: Guohai Liu Guanxue Yang Jie Xu et al.

Source: 2021 40th Chinese Control Conference (CCC). :1343-1347

Subject Terms: 0301 basic medicine, 03 medical and health sciences, 0206 medical engineering, 02 engineering and technology

Access URL: http://ieeexplore.ieee.org/xpls/abs_all.jsp?arnumber=9550146
http://xplorestaging.ieee.org/ielx7/9549237/9549238/09550146.pdf?arnumber=9550146

TBESO-BP: an improved regression model for predicting subclinical mastitis.

Authors: Han, Kexin Dai, Yongqiang Liu, Huan et al.

Source: Frontiers in Veterinary Science. 2025, p1-14. 14p.

IPCA-CMI: An Algorithm for Inferring Gene Regulatory Networks based on a Combination of PCA-CMI and MIT Score.

Authors: Aghdam, Rosa Ganjali, Mojtaba Eslahchi, Changiz

Source: PLoS ONE; Apr2014, Vol. 9 Issue 4, p1-10, 10p

Subject Terms: GENE regulatory networks, SYSTEMS biology, ALGORITHMS, HYBRID systems, GENE expression, BIOMETRY

Inferring gene regulatory networks by PCA-CMI using Hill climbing algorithm based on MIT score and SORDER method.

Authors: Aghdam, Rosa Alijanpour, Mohsen Azadi, Mehrdad et al.

Source: International Journal of Biomathematics; May2016, Vol. 9 Issue 3, p-1, 18p

Subject Terms: GENE regulatory networks, HILL climbing algorithms, BAYESIAN analysis, DIRECTED acyclic graphs, FALSE discovery rate

Inferring gene regulatory networks by an order independent algorithm using incomplete data sets.

Authors: Aghdam, Rosa Ganjali, Mojtaba Niloofar, Parisa et al.

Source: Journal of Applied Statistics; Apr2016, Vol. 43 Issue 5, p893-913, 21p

Subject Terms: GENE regulatory networks, BAYESIAN analysis, ALGORITHMS, BIG data, MICROARRAY technology

Identifying biomarkers for breast cancer by gene regulatory network rewiring.

Authors: Wang, Yijuan Liu, Zhi-Ping

Source: BMC Bioinformatics; 1/20/2022 Supplement 12, Vol. 22 Issue 12, p1-14, 14p

Subject Terms: BRCA genes, GENE regulatory networks, TUMOR markers, GENE expression, BIOMARKERS

Grouped Gene Selection of Cancer via Adaptive Sparse Group Lasso Based on Conditional Mutual Information.

Authors: Li, Juntao Dong, Wenpeng Meng, Deyuan

Source: IEEE/ACM Transactions on Computational Biology & Bioinformatics; Nov/Dec2018, Vol. 15 Issue 6, p2028-2038, 11p

An Information-Theoretic Framework for Understanding Learning and Choice Under Uncertainty.

Authors: Woo, Jae Hyung Balaji, Lakshana Soltani, Alireza

Source: Entropy; Oct2025, Vol. 27 Issue 10, p1056, 33p

Subject Terms: INFORMATION theory, REINFORCEMENT learning, COGNITIVE ability, LEARNING, UNCERTAINTY (Information theory), DECISION making

Inferring Gene Regulatory Networks Using Conditional Regulation Pattern to Guide Candidate Genes.

Authors: Xiao, Fei Gao, Lin Ye, Yusen et al.

Source: PLoS ONE; 5/12/2016, Vol. 11 Issue 5, p1-13, 13p

Subject Terms: GENE regulatory networks, ALGORITHMS, GENETIC regulation, PEARSON correlation (Statistics), COMPUTATIONAL complexity, COMPUTATIONAL biology

A mutual information measure of phase-amplitude coupling using gamma generalized linear models.

Authors: Perley, Andrew S. Coleman, Todd P.

Source: Frontiers in Computational Neuroscience; 2024, p1-17, 17p

Subject Terms: SLEEP spindles, INFORMATION measurement, MULTIPLE comparisons (Statistics), RECEIVER operating characteristic curves, PARKINSON'S disease, STATISTICAL power analysis

Forest construction of Gaussian and discrete variables with the application of Watanabe Bayesian Information Criterion.

Authors: Islam, Ashraful Suzuki, Joe

Source: Behaviormetrika; Jul2024, Vol. 51 Issue 2, p589-616, 28p

Subject Terms: SINGLE nucleotide polymorphisms, SPANNING trees, ESTIMATION theory, RANDOM variables

PROCEEDINGS ONE HUNDRED AND TWENTY EIGHTH ANNUAL MEETING OF THE UNITED STATES ANIMAL HEALTH ASSOCIATION.

Source: Proceedings of the Annual Meeting of the United States Animal Health Association. 10/10/2024, Vol. 128, p1-339. 336p.

Development of Stock Networks Using Part Mutual Information and Australian Stock Market Data.

Authors: Yan, Yan Wu, Boyao Tian, Tianhai et al.

Source: Entropy; Jul2020, Vol. 22 Issue 7, p773, 1p

Subject Terms: STOCK exchanges, INFORMATION networks, BIG data, ALGORITHMS, STATISTICAL correlation, PATH analysis (Statistics), INFORMATION theory