Výsledky vyhledávání - graph Algorithms in Bioinformatics

Generating random graphs with prescribed graphlet frequency bounds derived from probabilistic networks.

Autoři: Mornie, Bram Colle, Didier Audenaert, Pieter a další

Zdroj: PLoS ONE; 8/26/2025, Vol. 20 Issue 8, p1-22, 22p

Témata: RANDOM graphs, GRAPH algorithms, BIOINFORMATICS, STOCHASTIC models

Variation-aware algorithms for cancer genome analysis

Autoři: Dawson, Eric Thomas Durbin, Richard Chanock, Stephen

Přispěvatelé: Dawson, Eric Thomas Durbin, Richard Chanock, Stephen

Témata: 616.99, Cancer, Genomics, Bioinformatics, Variation Graphs, Structural Variation, Ionizing Radiation, Chernobyl, Algorithms, Kmers, Human Papillomavirus, HPV, MinHash, Thyroid Cancer, Papillary Thyroid Carcinoma, Mutational Signatures, Indels, Genetics, Genetic Variation, Variant Calling, Genome Assembly, Somatic Variation

Přístupová URL adresa: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.801926

Biclique: an R package for maximal biclique enumeration in bipartite graphs

Autoři: Lu, Yuping Phillips, Charles A Langston, Michael A

Zdroj: BMC Research Notes. 13(1)

Témata: 32 Biomedical and Clinical Sciences (for-2020), Networking and Information Technology R&D (NITRD) (rcdc), Algorithms (mesh), Software (mesh), Time Factors (mesh), Algorithms (mesh), Time Factors (mesh), Software (mesh), Biclique, Bipartite graph, Graph algorithms, Maximality, R package, Algorithms (mesh), Software (mesh), Time Factors (mesh), 0601 Biochemistry and Cell Biology (for), 1199 Other Medical and Health Sciences (for), Bioinformatics (science-metrix), 32 Biomedical and clinical sciences (for-2020)

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/0sr6j9wk
https://escholarship.org/content/qt0sr6j9wk/qt0sr6j9wk.pdf

Graph algorithms for bioinformatics

Autoři: Casadio, Rita Profiti, Giuseppe <1980>

Témata: INF/01 Informatica, Doctoral Thesis, PeerReviewed

URL: http://amsdottorato.unibo.it/6914/1/profiti_giuseppe_tesi.pdf
http://amsdottorato.unibo.it/6914/
http://amsdottorato.unibo.it/6914

Graph algorithms for bioinformatics

Autoři: Profiti, Giuseppe <1980>

Thesis Advisors: Casadio, Rita

Témata: INF/01 Informatica

Popis souboru: application/pdf

Dostupnost: http://amsdottorato.unibo.it/6914/

An External-Memory Algorithm for String Graph Construction.

Autoři: Bonizzoni, Paola Della Vedova, Gianluca Pirola, Yuri a další

Zdroj: Algorithmica. Jun2017, Vol. 78 Issue 2, p394-424. 31p.

Témata: *INTERSECTION graph theory, *BIOINFORMATICS, *DATA structures, *DATA compression, *ALGORITHMS

Integration of graph neural networks and transcriptomics analysis identify key pathways and gene signature for immunotherapy response and prognosis of skin melanoma.

Autoři: Ye, Maodong Ren, Shuai Luo, Huanjuan a další

Zdroj: BMC Cancer. 4/9/2025, Vol. 25 Issue 1, p1-18. 18p.

Témata: *GRAPH neural networks, *MACHINE learning, *MEDICAL sciences, *TREATMENT effectiveness, *DEEP learning

Tree diet: reducing the treewidth to unlock FPT algorithms in RNA bioinformatics

Autoři: Bertrand Marchand Yann Ponty Laurent Bulteau

Zdroj: Algorithms for Molecular Biology, Vol 17, Iss 1, Pp 1-17 (2022)

Témata: RNA, treewidth, FPT algorithms, RNA design, structure sequence alignment, Biology (General), QH301-705.5, Genetics, QH426-470

Popis souboru: electronic resource

Relation: https://doaj.org/toc/1748-7188

Přístupová URL adresa: https://doaj.org/article/eb2630cfa354470b904563442ea4cd2d

Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics

Autoři: Marchand, Bertrand Ponty, Yann Bulteau, Laurent

Témata: RNA, treewidth, FPT algorithms, RNA design, structure-sequence alignment, Data processing Computer science, InProceedings, publishedVersion

The resurgence of structure in deep neural networks

Autoři: Veličković, Petar Liò, Pietro

Přispěvatelé: Veličković, Petar Liò, Pietro

Témata: structural inductive biases, machine learning, deep learning, deep neural networks, graph neural networks, graph convolutional networks, graph attention networks, deep graph infomax, mutual information, unsupervised learning, infomax, graph convolutions, attention, self-attention, cross-modal, antibody, antigen, a` trous, paratope, audiovisual, multimodal, cross-connections, classification, human weight fluctuation, weight objective prediction, convolutional neural networks, recurrent neural networks, fitness data, x-cnn, x-lstm, gat, dgi, sparse datasets, multi-omics, bioinformatics, cortical meshes, graph attention, parcellation, neuroimaging, cortex parcellation, network embeddings, graph embeddings, model selection, structure learning, evolutionary neural networks, optimisation algorithms, neural networks, unsupervised node embedding

Přístupová URL adresa: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.774772

Simultaneous Identification of Duplications and Lateral Gene Transfers

Autoři: Tofigh, Ali Hallett, Mikael Lagergren, Jens

Zdroj: IEEE/ACM Transactions on Computational Biology & Bioinformatics. 8(2):517-535

Témata: Trees, Biology and genetics, Combinatorial algorithms, Graph algorithms, TECHNOLOGY, Bioengineering, Bioinformatics, TEKNIKVETENSKAP, Bioteknik, Bioinformatik, Information technology, Computer science, Informationsteknik, Datavetenskap, Datalogi

Popis souboru: electronic

Přístupová URL adresa: https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-10969

Tree diet: reducing the treewidth to unlock FPT algorithms in RNA bioinformatics.

Autoři: Marchand, Bertrand Ponty, Yann Bulteau, Laurent

Zdroj: Algorithms for Molecular Biology; 4/2/2022, Vol. 17 Issue 1, p1-17, 17p

Témata: REDUCING diets, RNA, DYNAMIC programming, BIOINFORMATICS, NP-hard problems

Enhancing Multiple Sequence Alignment with Genetic Algorithms: A Bioinformatics Approach in Biomedical Engineering.

Alternate Title: Una Mejora del Alineamiento Múltiple de Secuencias con Algoritmos Genéticos: Un Enfoque de Bioinformática en la Ingeniería Biomédica. (Spanish)

Autoři: Rios-Willars, Ernesto Vélez-Segura, Jennifer Delabra-Salinas, María Magdalena

Zdroj: Revista Mexicana de Ingeniería Biomédica; May-Aug2024, Vol. 45 Issue 2, p62-77, 16p

Témata: BIOINFORMATICS, GENETIC algorithms, BIOMEDICAL engineering, INFORMATION processing, COMPUTER input-output equipment

Algorithms for partitioning well-clustered graphs

Autoři: Zanetti, Luca Clifford, Raphael

Přispěvatelé: Zanetti, Luca Clifford, Raphael

Témata: 004

Přístupová URL adresa: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.761085

Safety in Multi-Assembly via Paths Appearing in All Path Covers of a DAG

Autoři: Cáceres, Manuel Mumey, Brendan Husić, Edin a další

Zdroj: IEEE/ACM Transactions on Computational Biology & Bioinformatics. 19(6):3673-3684

Témata: Graph algorithms, Network problems, Analysis of Algorithms and Problem Complexity, Biology and genetics, datalogi, Computer Science

Popis souboru: print

Přístupová URL adresa: https://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-199751
https://doi.org/10.1109/tcbb.2021.3131203

LogoBar: Bar graph visualization of protein logos with gaps

Autoři: Pérez-Bercoff, Åsa Koch, Johan Bürglin, Thomas R.

Zdroj: Bioinformatics. 22(1):112-114

Témata: amino acid sequence, article, bioinformatics, computer program, genetic algorithm, information processing, priority journal, sequence alignment, Algorithms, Amino Acid Motifs, Amino Acids, Computational Biology, Computers, Conserved Sequence, Databases, Protein, Internet, Molecular Sequence Data, Programming Languages, Proteins, Sequence Analysis, Software

Popis souboru: print

Přístupová URL adresa: https://urn.kb.se/resolve?urn=urn:nbn:se:sh:diva-22737
https://doi.org/10.1093/bioinformatics/bti761

Genome-graph based genotyping with applications to highly variable genes in P. falciparum

Autoři: Letcher, Brice Iqbal, Zamin

Přispěvatelé: Letcher, Brice Iqbal, Zamin

Témata: bioinformatics, genotyping, genome graphs, malaria genomics, evolution

Přístupová URL adresa: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.871809

Structural analysis of macromolecular folds and the application to phasing

Autoři: Medina Bernal, Ana del Rocío

Přispěvatelé: University/Department: Universitat de Barcelona. Facultat de Farmàcia i Ciències de l'Alimentació

Thesis Advisors: Usón, Isabel, Sammito, Massimo Domenico, Badia Palacín, Josefa

Zdroj: TDX (Tesis Doctorals en Xarxa)

Témata: Biologia molecular, Biología molecular, Molecular biology, Bioinformàtica, Bioinformática, Bioinformatics, Macromolècules, Macromoléculas, Macromolecules, Cristal·lografia, Cristalografía, Crystallography, Estructura cristal·lina (Sòlids), Estructura cristalina (Sólidos), Layer structure (Solids), Ciències Experimentals i Matemàtiques

Popis souboru: application/pdf

Přístupová URL adresa: http://hdl.handle.net/10803/673056

A Robust Method for Searching the Smallest Set of Smallest Rings with a Path-Included Distance Matrix

Autoři: Lee, Chang Joon Kang, Young-Mook Cho, Kwang-Hwi a další

Zdroj: Proceedings of the National Academy of Sciences of the United States of America, 2009 Oct . 106(41), 17355-17358.

Přístupová URL adresa: https://www.jstor.org/stable/40485192

Examining bacterial variation with genome graphs and Nanopore sequencing

Autoři: Hall, Michael Iqbal, Zamin

Přispěvatelé: Hall, Michael Iqbal, Zamin

Témata: bioinformatics, bacterial genomics, tuberculosis, nanopore sequencing, genome graphs

Přístupová URL adresa: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.848728