Výsledky vyhľadávania - gene expression microarray data clustering

Hierarchical information representation and efficient classification of gene expression microarray data

Autori: Bosio, Mattia

Prispievatelia: University/Department: Universitat Politècnica de Catalunya. Departament de Teoria del Senyal i Comunicacions

Thesis Advisors: Salembier, Philippe, Oliveras i Vergés, Albert

Zdroj: TDX (Tesis Doctorals en Xarxa)

Popis súboru: application/pdf

Prístupová URL adresa: http://hdl.handle.net/10803/145902
https://dx.doi.org/10.5821/dissertation-2117-95353

Weighted Gene Co-expression Network Analysis of Glioblastoma Gene Expression Microarray Data.

Autori: Madhusudhan, G. Sujatha, P. Geetharathan, T.

Zdroj: Journal of Advanced Zoology. 2023, Vol. 44 Issue 4, p105-124. 20p.

A big data driven distributed density based hesitant fuzzy clustering using Apache spark with application to gene expression microarray.

Autori: Hosseini, Behrooz Kiani, Kourosh

Zdroj: Engineering Applications of Artificial Intelligence. Mar2019, Vol. 79, p100-113. 14p.

Predmety: *FUZZY clustering technique, *GENE expression, *MICROARRAY technology, *DISTRIBUTED computing, *MACHINE learning

The Local Maximum Clustering Method and Its Application in Microarray Gene Expression Data Analysis: The local maximum clustering method and its application in microarray gene expression data analysis

Autori: Bernard R. Brooks Xiongwu Wu Yi Chen a ďalší

Zdroj: EURASIP Journal on Advances in Signal Processing, Vol 2004, Iss 1, p 823191 (2004)

Predmety: 0301 basic medicine, 0303 health sciences, TK7800-8360, Classification and discrimination, cluster analysis (statistical aspects), Biochemistry, molecular biology, TK5101-6720, 03 medical and health sciences, classification, model data sets, Hardware and Architecture, Signal Processing, gene expression, Telecommunication, data cluster, Electronics, Electrical and Electronic Engineering, Genetics and epigenetics, clustering method, microarray

Popis súboru: application/xml

Prístupová URL adresa: https://asp-eurasipjournals.springeropen.com/track/pdf/10.1155/S1110865704309145
https://doaj.org/article/0605b14cf6f0497ba53071830eaf3bda
https://asp-eurasipjournals.springeropen.com/articles/10.1155/S1110865704309145
https://scholars.uthscsa.edu/en/publications/the-local-maximum-clustering-method-and-its-application-in-microa
https://ui.adsabs.harvard.edu/abs/2004EJASP2004...11W/abstract
https://dblp.uni-trier.de/db/journals/ejasp/ejasp2004.html#WuCBS04
https://link.springer.com/content/pdf/10.1155%2FS1110865704309145.pdf
https://link.springer.com/article/10.1155/S1110865704309145

A simple and robust algorithm for microarray data clustering based on gene population‐variance ratio metric

Autori: Amit Konar Kasturi Bhattacharjee Soumyadeep Chatterjee

Zdroj: Biotechnology Journal. 4:1357-1361

Predmety: 0301 basic medicine, 03 medical and health sciences, Models, Genetic, Gene Expression Profiling, 0206 medical engineering, Cluster Analysis, Computer Simulation, 02 engineering and technology, Algorithms, Oligonucleotide Array Sequence Analysis

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/19579218
https://www.ncbi.nlm.nih.gov/pubmed/19579218

Venn Mapping: clustering of heterologous microarray data based on the number of co-occurring differentially expressed genes

Autori: Marcel Smid Guido Jenster Lambert C. J. Dorssers

Zdroj: Bioinformatics. 19:2065-2071

Predmety: Male, 0301 basic medicine, Molecular Sequence Data, Breast Neoplasms, Sensitivity and Specificity, Pattern Recognition, Automated, 03 medical and health sciences, Sequence Homology, Nucleic Acid, EMC MM-03-49-01, Cluster Analysis, Humans, Oligonucleotide Array Sequence Analysis, 0303 health sciences, Models, Statistical, Base Sequence, Models, Genetic, Gene Expression Profiling, Chromosome Mapping, Prostatic Neoplasms, Reproducibility of Results, Sequence Analysis, DNA, EMC MM-03-24-07, 3. Good health, Female, Sequence Alignment, Algorithms

Prístupová URL adresa: https://academic.oup.com/bioinformatics/article-pdf/19/16/2065/667343/btg282.pdf
https://pubmed.ncbi.nlm.nih.gov/14594711
https://pure.eur.nl/en/publications/595e16cc-126c-49f9-aa40-3bc5be053a2b
https://paperity.org/p/41747008/venn-mapping-clustering-of-heterologous-microarray-data-based-on-the-number-of-co
https://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics19.html#SmidDJ03
https://academic.oup.com/bioinformatics/article/19/16/2065/242310
https://pubmed.ncbi.nlm.nih.gov/14594711/
https://doi.org/10.1093/bioinformatics/btg282
http://bioinformatics.oxfordjournals.org/content/19/16/2065.abstract

Rough-Fuzzy C-Means for Clustering Microarray Gene Expression Data

Autori: Pradipta Maji Sushmita Paul

Zdroj: Lecture Notes in Computer Science ISBN: 9783642273865

Prístupová URL adresa: https://link.springer.com/chapter/10.1007%2F978-3-642-27387-2_26
https://rd.springer.com/chapter/10.1007/978-3-642-27387-2_26
https://dblp.uni-trier.de/db/conf/permin/permin2012.html#MajiP12

An improved ant-based algorithm based on heaps merging and fuzzy c-means for clustering cancer gene expression data

Autori: Hasan Bulut Aytuğ Onan Serdar Korukoğlu

Zdroj: Sādhanā. 45

Predmety: 0301 basic medicine, ant-based clustering, 03 medical and health sciences, 0206 medical engineering, Gene expression data, correlation-based feature selection, 02 engineering and technology, hybrid algorithms, clustering, gene selection, 3. Good health

Prístupová URL adresa: https://link.springer.com/article/10.1007/s12046-020-01399-x
https://hdl.handle.net/11454/62231
https://doi.org/10.1007/s12046-020-01399-x

A novel computational approach for biomarker detection for gene expression-based computer-aided diagnostic systems for breast cancer

Prispievatelia: Al-Yousef, A Samarasinghe, Sandhya Cartwright, H

Popis súboru: pp.195-208, 17 chapters; Print

Relation: The original publication is available from Humana Press - https://doi.org/10.1007/978-1-0716-0826-5_9 - https://doi.org/10.1007/978-1-0716-0826-5_9; Artificial neural networks; Methods in Molecular Biology

Dostupnosť: http://api.digitalnz.org/records/56055942/source

Gene Expression Data Analysis Using Multiobjective Clustering Improved with SVM Based Ensemble.

Autori: Mukhopadhyay, Anirban Maulik, Ujjwal Bandyopadhyay, Sanghamitra

Zdroj: In Silico Biology. 2012, Vol. 11 Issue 1/2, p19-27. 9p. 1 Chart, 1 Graph.

Predmety: *GENE expression, *DATA analysis, *DNA microarrays, *SUPPORT vector machines, *DATA modeling, *BIOCHIPS, *TOXICOGENOMICS

FWCMR: A scalable and robust fuzzy weighted clustering based on MapReduce with application to microarray gene expression.

Autori: Hosseini, Behrooz Kiani, Kourosh

Zdroj: Expert Systems with Applications. Jan2018, Vol. 91, p198-210. 13p.

Predmety: *APPLICATION software, *FUZZY clustering technique, *GENE expression, *DATA mining, *ROBUST control

Linear Predictive Coding and Wavelet Decomposition for Robust Microarray Data Clustering

Autori: Robert S. H. Istepanian Jean-Christophe Nebel Ala Sungoor

Zdroj: 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. :4629-4632

Predmety: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Gene Expression Regulation, Gene Expression Profiling, Animals, Cluster Analysis, Humans, Computer Simulation, Sensitivity and Specificity, Software, Oligonucleotide Array Sequence Analysis

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/18003037
https://ieeexplore.ieee.org/document/4353371/
https://www.ncbi.nlm.nih.gov/pubmed/18003037
http://europepmc.org/abstract/MED/18003037
http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.ieee-000004353371

Binary tree-structured vector quantization approach to clustering and visualizing microarray data

Autori: Igor Jurisica Janice I. Glasgow Christian A. Cumbaa a ďalší

Zdroj: Bioinformatics. 18:S111-S119

Predmety: 0301 basic medicine, 0303 health sciences, Lung Neoplasms, Models, Statistical, Models, Genetic, Gene Expression Profiling, User-Computer Interface, 03 medical and health sciences, Carcinoma, Non-Small-Cell Lung, Computer Graphics, Cluster Analysis, Humans, Algorithms, Software, Oligonucleotide Array Sequence Analysis

Prístupová URL adresa: https://academic.oup.com/bioinformatics/article-pdf/18/suppl_1/S111/629873/18S111.pdf
https://pubmed.ncbi.nlm.nih.gov/12169538
https://academic.oup.com/bioinformatics/article/18/suppl_1/S111/231929
http://bioinformatics.oxfordjournals.org/content/18/suppl_1/S111.full.pdf
https://academic.oup.com/bioinformatics/article-pdf/18/suppl_1/S111/629873/18S111.pdf
https://paperity.org/p/41879923/binary-tree-structured-vector-quantization-approach-to-clustering-and-visualizing
http://www.ncbi.nlm.nih.gov/pubmed/12169538
https://mayoclinic.pure.elsevier.com/en/publications/binary-tree-structured-vector-quantization-approach-to-clustering

A comparison of clustering algorithms for use in large scale gene expression analysis using synthetic microarray data

Autori: Hart, C. E Bornstein, B Mann, T a ďalší

Prístupová URL adresa: https://ntrs.nasa.gov/citations/20060033334

Association network modeling from microarray data around fermentation stress response gene NSF1 (YPL230W) using significantly co-expressed gene set

Autori: Bessonov, Kyrylo Chiu, D. K. Y. van der Merwe, G.

Zdroj: urn:isbn:9781424483037
Bioinformatics and Biomedicine Workshops (BIBMW), 2010 IEEE International Conference on (2010-12); 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW), 18 Dec. 2010

Predmety: bioinformatics;biological techniques;fermentation;genetics;microorganisms;molecular biophysics;pattern clustering;NSF1 (YPL230W) gene;NSF1 expression;NSF1 gene function;Saccharomyces cerevisiae (DBY7286);YPD media;association network modeling;coexpressed gene set;complete link clustering algorithm;fermentation stress conditions;fermentation stress response gene;functional chromosomal neighborhoods;interassociated gene network;microarray data;time course microarray gene expression profiles;yeast;NSF1;clustering;diauxic shift;microarrays;yeast, Life sciences, Sciences du vivant

Prístupová URL adresa: https://orbi.uliege.be/handle/2268/144279

Extracting Negative Correlation Pattern from Gene Expression Microarray Data

Autori: Cholhee Jung Hwanseok Rhee Hyunseok Park a ďalší

Zdroj: Genome Informatics. 2000, 11:253

An integrated tool for microarray data clustering and cluster validity assessment

Autori: Francisco Azuaje Nadia Bolshakova Pádraig Cunningham

Zdroj: Proceedings of the 2004 ACM symposium on Applied computing. :133-137

Predmety: 0301 basic medicine, Gene Expression Profiling, 0206 medical engineering, Information Storage and Retrieval, 02 engineering and technology, Pattern Recognition, Automated, Systems Integration, Benchmarking, User-Computer Interface, 03 medical and health sciences, Cluster Analysis, Database Management Systems, Algorithms, Software, Oligonucleotide Array Sequence Analysis

Prístupová URL adresa: https://academic.oup.com/bioinformatics/article-pdf/21/4/451/9642457/Bti190.pdf
https://pubmed.ncbi.nlm.nih.gov/15608048
https://paperity.org/p/41731938/an-integrated-tool-for-microarray-data-clustering-and-cluster-validity-assessment
https://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics21.html#BolshakovaAC05
https://www.ncbi.nlm.nih.gov/pubmed/15608048
http://bioinformatics.oxfordjournals.org/content/21/4/451.full
https://academic.oup.com/bioinformatics/article/21/4/451/203601
https://academic.oup.com/bioinformatics/article-pdf/21/4/451/9642457/Bti190.pdf
http://www.cs.tcd.ie/publications/tech-reports/reports.04/TCD-CS-2004-09.pdf
https://dl.acm.org/citation.cfm?doid=967900.967929
https://dblp.uni-trier.de/db/conf/sac/sac2004.html#BolshakovaAC04
https://doi.org/10.1145/967900.967929
http://portal.acm.org/citation.cfm?id=967900.967929
http://cs.njit.edu/usman/courses/biol794_spring05/M2.pdf

CLUSTERING GENE EXPRESSION DATA WITH KERNEL PRINCIPAL COMPONENTS

Autori: Dechang Chen Ying Xu Halima Bensmail a ďalší

Zdroj: Journal of Bioinformatics and Computational Biology. :303-316

Predmety: 0301 basic medicine, Principal Component Analysis, 0303 health sciences, Leukemia, Gene Expression Profiling, Neoplasm Proteins, Pattern Recognition, Automated, 03 medical and health sciences, Fuzzy Logic, Artificial Intelligence, Biomarkers, Tumor, Cluster Analysis, Humans, Algorithms, Oligonucleotide Array Sequence Analysis

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/15852507

A Variance-Stabilizing Transformation for Gene-Expression Microarray Data

Autori: Durbin, Blythe Hardin, Johanna Hawkins, Douglas a ďalší

Zdroj: Bioinformatics. 18

Predmety: cDNA array, microarray, statistical analysis, transformation, normalization

Popis súboru: application/pdf

Prístupová URL adresa: https://escholarship.org/uc/item/37j5b4z7
https://escholarship.org/content/qt37j5b4z7/qt37j5b4z7.pdf

biDCG: a new method for discovering global features of DNA microarray data via an iterative re-clustering procedure.

Autori: Chen, Chia-Pei Fushing, Hsieh Atwill, Rob a ďalší

Zdroj: PLoS One. 9(7)

Predmety: Adenocarcinoma, Cluster Analysis, Gene Expression Profiling, Humans, Lung Neoplasms, Oligonucleotide Array Sequence Analysis, Pattern Recognition, Automated

Popis súboru: application/pdf

Prístupová URL adresa: https://escholarship.org/uc/item/63r794mq
https://escholarship.org/content/qt63r794mq/qt63r794mq.pdf