Výsledky vyhledávání - anzsrc-for: 3102 (bioinformatics OR informatics) and computational biology

Application of network link prediction in drug discovery

Autoři: Abbas, K Abbasi, A Dong, S a další

Zdroj: BMC Bioinformatics
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-21 (2021)

Témata: 0301 basic medicine, QH301-705.5, Computer applications to medicine. Medical informatics, 0206 medical engineering, R858-859.7, Bioengineering, 02 engineering and technology, anzsrc-for: 49 Mathematical sciences, Machine Learning, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Drug Discovery, Machine Learning and Artificial Intelligence, Drug Interactions, anzsrc-for: 31 Biological Sciences, Biology (General), Poly-pharmacy side effects prediction, anzsrc-for: 46 Information and computing sciences, Data Science, anzsrc-for: 01 Mathematical Sciences, 3 Good Health and Well Being, 1.4 Methodologies and measurements, 8.4 Research design and methodologies (health services), 3. Good health, Poly-pharmacy, Networking and Information Technology R&D (NITRD), Data-driven drug discovery, Drug-target prediction, anzsrc-for: 06 Biological Sciences, Network link prediction, Patient Safety, Generic health relevance, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 08 Information and Computing Sciences, Algorithms, 31 Biological Sciences, Research Article

Popis souboru: application/pdf

Přístupová URL adresa: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04082-y
https://pubmed.ncbi.nlm.nih.gov/33845763
https://doaj.org/article/1d01a93d39a2459b986f82ecaa891468
https://link.springer.com/article/10.1186/s12859-021-04082-y
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-021-04082-y
https://dblp.uni-trier.de/db/journals/bmcbi/bmcbi22.html#AbbasASLYCCH21
https://doi.org/10.1186/s12859-021-04082-y
https://link.springer.com/article/10.1186/s12859-021-04082-y/tables/3
https://europepmc.org/article/MED/33845763

Pairwise alignment of nucleotide sequences using maximal exact matches

Autoři: Sri Parameswaran Aleksandar Ignjatovic Bruno A. Gaëta a další

Zdroj: BMC Bioinformatics
BMC Bioinformatics, Vol 20, Iss 1, Pp 1-15 (2019)

Témata: 0301 basic medicine, QH301-705.5, Computer applications to medicine. Medical informatics, 0206 medical engineering, anzsrc-for: 46 Information and Computing Sciences, R858-859.7, 02 engineering and technology, anzsrc-for: 49 Mathematical sciences, Dynamic programming, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, 46 Information and Computing Sciences, Sequence alignment, anzsrc-for: 31 Biological Sciences, Biology (General), Nucleotides, Methodology Article, anzsrc-for: 01 Mathematical Sciences, DNA, Sequence Analysis, DNA, anzsrc-for: 06 Biological Sciences, Generic health relevance, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 08 Information and Computing Sciences, Affine-gap penalty, Sequence Analysis, Sequence Alignment, Algorithms, 31 Biological Sciences

Popis souboru: application/pdf

Přístupová URL adresa: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-019-2827-0
https://pubmed.ncbi.nlm.nih.gov/31113356
https://doaj.org/article/7fd87e0f5d1b4ca68661741718e3a4bd
https://link.springer.com/article/10.1186/s12859-019-2827-0
https://link.springer.com/article/10.1186/s12859-019-2827-0/figures/1
https://pubmed.ncbi.nlm.nih.gov/31113356/
https://link.springer.com/content/pdf/10.1186/s12859-019-2827-0.pdf
https://dblp.uni-trier.de/db/journals/bmcbi/bmcbi20.html#BayatGIP19
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2827-0

How mandibular and hyoid morphology alters tongue muscle architecture in healthy adults: An anatomical atlas and statistical shape model of the tongue

Autoři: Lloyd, RA Dissanayake, E Jugé, L a další

Zdroj: urn:ISSN:0010-4825 ; urn:ISSN:1879-0534 ; Computers in Biology and Medicine, 189, 110006-110006

Témata: 31 Biological Sciences, 3102 Bioinformatics and Computational Biology, 4203 Health Services and Systems, 42 Health Sciences, 46 Information and Computing Sciences, 4601 Applied Computing, Biomedical Imaging, Dental/Oral and Craniofacial Disease, Clinical Research, Humans, Tongue, Male, Female, Adult, Hyoid Bone, Mandible, Magnetic Resonance Imaging, Models, Anatomic, Young Adult, Diffusion Magnetic Resonance Imaging, DWI, MRI, Muscle architecture, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 4203 Health Services and Systems, anzsrc-for: 42 Health Sciences, anzsrc-for: 46 Information and Computing Sciences, anzsrc-for: 4601 Applied Computing

Popis souboru: application/pdf

Relation: https://hdl.handle.net/1959.4/104552; https://doi.org/10.1016/j.compbiomed.2025.110006

Dostupnost: https://hdl.handle.net/1959.4/104552
https://unsworks.unsw.edu.au/bitstreams/c5e53fcc-256f-485d-9ea2-bde0f2ddc61f/download
https://doi.org/10.1016/j.compbiomed.2025.110006

Sex Differences in Oncogenic Mutational Processes

Autoři: Constance H. Li Stephenie D. Prokopec Ren X. Sun a další

Přispěvatelé: Constance H. Li Stephenie D. Prokopec Ren X. Sun a další

Zdroj: Nat Commun
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)
instname
RUO. Repositorio Institucional de la Universidad de Oviedo
Universidad de Oviedo (UNIOVI)
Dipòsit Digital de la UB
Universidad de Barcelona
Articles publicats en revistes (Genètica, Microbiologia i Estadística)
Nature Communications, Vol 11, Iss 1, Pp 1-24 (2020)
Nature Communications, 11, 1
Nature communications, 11 (1
Li, C H, Prokopec, S D, Sun, R X, Yousif, F, Schmitz, N, Boutros, P C, PCAWG Tumour Subtypes and Clinical Translation & Brunak, S 2020, ' Sex differences in oncogenic mutational processes ', Nature Communications, vol. 11, no. 1, 4330 . https://doi.org/10.1038/s41467-020-17359-2
Li, Constance H; Prokopec, Stephenie D; Sun, Ren X; Yousif, Fouad; Schmitz, Nathaniel; Boutros, Paul C (2020). Sex differences in oncogenic mutational processes. Nature communications, 11(1), p. 4330. 10.1038/s41467-020-17359-2 <http://dx.doi.org/10.1038/s41467-020-17359-2>
Li, C H, Prokopec, S D, Sun, R X, Yousif, F, Schmitz, N & Boutros, P C 2020, 'Sex differences in oncogenic mutational processes', Nat Commun, vol. 11, no. 1, pp. 4330. https://doi.org/10.1038/s41467-020-17359-2
Nature Communications (2020), 1-24
Nature Communications, vol 11, iss 1
NATURE COMMUNICATIONS
Nature Communications
Li, C H, Prokopec, S D, Sun, R X, Yousif, F, Schmitz, N, PCAWG Tumour Subtypes and Clinical Translation, Boutros, P C & PCAWG Consortium 2020, 'Sex differences in oncogenic mutational processes', Nature Communications, vol. 11, 4330. https://doi.org/10.1038/s41467-020-17359-2

Témata: sex differences, Male, Geschlechterdifferenz, oncogenes, Kynferði, 32 Biomedical and Clinical Sciences, DISPARITIES, Cancer genomics, Càncer, 10. No inequality, Cancer genetics, Genome informatics, Cancer genomics, Oncogenes, Cancer genetics, Cancer, 0303 health sciences, anzsrc-for: 42 Health Sciences, Neoplasms -- genetics, Sciences bio-médicales et agricoles, 1600 Chemistry, Neoplasms/genetics, 3. Good health, Radiation Oncology - Radboud University Medical Center, Science & Technology - Other Topics, anzsrc-for: 3102 Bioinformatics and Computational Biology, Human, Logistic Model, Science, Bioinformatics and Computational Biology, Radboudumc 17: Women's cancers RIHS: Radboud Institute for Health Sciences, 320226 - Surgery, Article, Genomic Instability, RC0254, Càncer -- Epidemiologia, Open Reading Frames, 03 medical and health sciences, anzsrc-for: 32 Biomedical and Clinical Sciences, Cancer Genomics, SDG 3 - Good Health and Well-being, Chromosomal Instability, Health Sciences, Sex differences, Genetics, Humans, beta Catenin -- genetics, SIGNATURES, anzsrc-for: 3211 Oncology and Carcinogenesis, Krebs, Science & Technology, 45, RC0254 Neoplasms. Tumors. Oncology (including Cancer), Oncogenes, 3211 Oncology and Carcinogenesis, Radboudumc 17: Women's cancers RIMLS: Radboud Institute for Molecular Life Sciences, Cancérologie, 692/4028/67/69, Genòmica, Laboratory Medicine - Radboud University Medical Center, Logistic Models, General Biochemistry, Mutation, PCAWG Tumour Subtypes and Clinical Translation, 119, 31 Biological Sciences, 0301 basic medicine, Medizin, 200199 - Clinical health not elsewhere classified, General Physics and Astronomy, Genome informatics, 3102 Bioinformatics and Computational Biology, Neoplasms, 38/23, Medicine and Health Sciences, 2.1 Biological and endogenous factors, 3100 Physics and Astronomy, Exome, anzsrc-for: 31 Biological Sciences, beta Catenin, ddc:610, Sex Characteristics, Genome, 318 Medical biotechnology, article, 3 Good Health and Well Being, 3rd-DAS, Biological Sciences, CANCER, Multidisciplinary Sciences, SURVIVAL, 631/114/2785, Female, Càncer -- Tractament, Oncogenes -- genetics, 1300 Biochemistry, beta Catenin/genetics, Oncology and Carcinogenesis, 3122 Cancers, Genetics and Molecular Biology, 610 Medicine & health, QH426 Genetics, Open Reading Frame, Cancer epidemiology, 631/67/68, Krabbameinsrannsóknir, cancer, QH426, Oncogene, Krabbamein, Oncogenes/genetics, Biomedical and Clinical Sciences, Genome, Human, Sex organs, Human Genome, 42 Health Sciences, PCAWG Consortium, General Chemistry, GENE, Good Health and Well Being, Estudis de gènere, oncogenic mutational processes, 692/4028/67/395, Diferències entre sexes, Neoplasm, Women's Health, Gender studies, 3111 Biomedicine

Popis souboru: application/pdf; 1 full-text file(s): application/pdf; fulltext; application/zip; text/xml; ELETTRONICO; print

Přístupová URL adresa: https://www.nature.com/articles/s41467-020-17359-2.pdf
https://pubmed.ncbi.nlm.nih.gov/32859912
http://hdl.handle.net/10261/236921
http://hdl.handle.net/10651/61361
http://hdl.handle.net/2445/175271
https://hdl.handle.net/2445/175271
https://eprints.gla.ac.uk/225282/1/225282.pdf
https://doaj.org/article/eb0e62b5b1ad4e72be0a993246cb8d67
https://hdl.handle.net/https://repository.ubn.ru.nl/handle/2066/226014
https://www.biorxiv.org/content/biorxiv/early/2019/01/28/528968.full.pdf
https://www.biorxiv.org/content/10.1101/528968v2
https://www.biorxiv.org/content/10.1101/528968v2.supplementary-material
https://biorxiv.org/content/biorxiv/early/2019/01/23/528968.full-text.pdf
https://www.biorxiv.org/content/10.1101/528968v1
https://kyushu-u.pure.elsevier.com/ja/publications/sex-differences-in-oncogenic-mutational-processes
https://www.imm.ox.ac.uk/publications/1130307
http://dspace.ewha.ac.kr/handle/2015.oak/255453
http://eprints.gla.ac.uk/225282/
https://miami.pure.elsevier.com/en/publications/sex-differences-in-oncogenic-mutational-processes
https://researchonline.jcu.edu.au/68157/
http://hdl.handle.net/10852/85452
https://doi.org/10.1038/s41467-020-17359-2
https://hdl.handle.net/2066/226014
https://repository.ubn.ru.nl//bitstream/handle/2066/226014/226014.pdf
https://ueaeprints.uea.ac.uk/id/eprint/86707/
https://ddd.uab.cat/record/308056
https://resolver.sub.uni-goettingen.de/purl?gro-2/133868
http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/313158
https://curis.ku.dk/ws/files/258902905/s41467_020_17359_2.pdf
https://boris.unibe.ch/146651/
https://hdl.handle.net/20.500.11815/2171
https://biblio.vub.ac.be/vubir/sex-differences-in-oncogenic-mutational-processes(11c550a3-653c-4d1a-804d-fcae6c37476f).html
https://trepo.tuni.fi/handle/10024/127879
https://escholarship.org/uc/item/8wr1m53g
https://escholarship.org/content/qt8wr1m53g/qt8wr1m53g.pdf
http://hdl.handle.net/1854/LU-8748408
http://doi.org/10.1038/s41467-020-17359-2
https://biblio.ugent.be/publication/8748408/file/8748410
https://biblio.ugent.be/publication/8748408
https://hdl.handle.net/10023/20993
https://hdl.handle.net/11250/2764296
https://publications.scilifelab.se/publication/bd1a87d416a44b78b1e5b21dd61f2b66

Selective intrafascicular stimulation of myelinated and unmyelinated nerve fibers through a longitudinal electrode: A computational study

Autoři: Wang, X Zhang, Y Guo, T a další

Zdroj: urn:ISSN:0010-4825 ; urn:ISSN:1879-0534 ; Computers in Biology and Medicine, 176, 108556-108556

Témata: 31 Biological Sciences, 3102 Bioinformatics and Computational Biology, 4203 Health Services and Systems, 42 Health Sciences, 46 Information and Computing Sciences, 4601 Applied Computing, Neurosciences, Animals, Nerve Fibers, Myelinated, Unmyelinated, Rats, Electric Stimulation, Nanotubes, Carbon, Models, Neurological, Sciatic Nerve, Electrodes, Computational modeling, Intrafascicular electrical stimulation, Longitudinal electrode, Peripheral nerve, Selective activation, Unmyelinated C fiber, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 4203 Health Services and Systems, anzsrc-for: 42 Health Sciences, anzsrc-for: 46 Information and Computing Sciences

Relation: http://hdl.handle.net/1959.4/102145; https://doi.org/10.1016/j.compbiomed.2024.108556

Dostupnost: http://hdl.handle.net/1959.4/102145
https://doi.org/10.1016/j.compbiomed.2024.108556

NGSANE: a lightweight production informatics framework for high-throughput data analysis

Autoři: Buske, FA French, HJ Smith, MA a další

Přispěvatelé: Buske, FA French, HJ Smith, MA a další

Zdroj: urn:ISSN:1367-4811 ; urn:ISSN:1460-2059 ; Bioinformatics, 30, 10, 1471-1472

Témata: 46 Information and Computing Sciences, 31 Biological Sciences, 3102 Bioinformatics and Computational Biology, 4601 Applied Computing, Networking and Information Technology R&D (NITRD), Automation, Laboratory, High-Throughput Nucleotide Sequencing, Humans, Software, anzsrc-for: 46 Information and Computing Sciences, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 4601 Applied Computing, anzsrc-for: 01 Mathematical Sciences, anzsrc-for: 06 Biological Sciences, anzsrc-for: 08 Information and Computing Sciences, anzsrc-for: 49 Mathematical sciences

Popis souboru: application/pdf

Relation: https://hdl.handle.net/1959.4/unsworks_63983; https://doi.org/10.1093/bioinformatics/btu036

Dostupnost: https://hdl.handle.net/1959.4/unsworks_63983
https://unsworks.unsw.edu.au/bitstreams/59b0b8a9-7b2e-45f6-9084-3144e185aec3/download
https://doi.org/10.1093/bioinformatics/btu036

The Dark Proteome Database

Autoři: Agostinho Rosa Seán I. O'Donoghue Nelson Perdigão

Zdroj: BioData Min
BioData Mining, Vol 10, Iss 1, Pp 1-11 (2017)

Témata: 0301 basic medicine, QA299.6-433, 0303 health sciences, Molecular Structure, anzsrc-for: 4605 Data management and data science, anzsrc-for: 3101 Biochemistry and Cell Biology, Computer applications to medicine. Medical informatics, R858-859.7, Homology Modelling, 3101 Biochemistry and Cell Biology, Software Article, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Generic health relevance, anzsrc-for: 0801 Artificial Intelligence and Image Processing, anzsrc-for: 1303 Specialist Studies in Education, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 31 Biological Sciences, anzsrc-for: 1101 Medical Biochemistry and Metabolomics, Dark Proteome, Analysis, 31 Biological Sciences

Popis souboru: application/pdf

Přístupová URL adresa: https://biodatamining.biomedcentral.com/track/pdf/10.1186/s13040-017-0144-6
https://pubmed.ncbi.nlm.nih.gov/28736578
https://doaj.org/article/3812817d3f9947359f0f0b4c59413dee
https://biodatamining.biomedcentral.com/articles/10.1186/s13040-017-0144-6/metrics
https://www.ncbi.nlm.nih.gov/pubmed/28736578
https://biodatamining.biomedcentral.com/articles/10.1186/s13040-017-0144-6
https://link.springer.com/content/pdf/10.1186/s13040-017-0144-6.pdf
https://pubmed.ncbi.nlm.nih.gov/28736578/
https://link.springer.com/article/10.1186/s13040-017-0144-6

Metabolic and mitochondria alterations induced by SARS‐CoV‐2 accessory proteins ORF3a, ORF9b, ORF9c and ORF10

Autoři: López-Ayllón, BD Marin, S Fernández, MF a další

Přispěvatelé: López-Ayllón, BD Marin, S Fernández, MF a další

Zdroj: Articles publicats en revistes (Bioquímica i Biomedicina Molecular)
Dipòsit Digital de la UB
Universidad de Barcelona
Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)

Témata: anzsrc-for: 1108 Medical Microbiology, Coronaviruses, ORF3a, ORF9c, ADN mitocondrial, 3101 Biochemistry and Cell Biology, ORF9b, Viroporin Proteins, Genome‐scale metabolic modeling, 3102 Bioinformatics and Computational Biology, transcriptomics, Open Reading Frames, Viral Proteins, ORF10, Genetics, 2.1 Biological and endogenous factors, Metabolomics, Humans, Viral Regulatory and Accessory Proteins, anzsrc-for: 31 Biological Sciences, Transcriptomics, Nutrition, genome‐scale metabolic modeling, SARS-CoV-2, anzsrc-for: 3101 Biochemistry and Cell Biology, COVID-19, 3 Good Health and Well Being, anzsrc-for: 3107 Microbiology, metabolomics, Mitochondrial DNA, Mitochondria, 3. Good health, anzsrc-for: 3207 Medical microbiology, mitochondria, Infectious Diseases, Emerging Infectious Diseases, anzsrc-for: 0605 Microbiology, Metabolòmica, anzsrc-for: 3202 Clinical sciences, A549 Cells, anzsrc-for: 3102 Bioinformatics and Computational Biology, Transcriptome, 31 Biological Sciences

Popis souboru: application/pdf; text/xml

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38949191
https://hdl.handle.net/2445/218002
http://hdl.handle.net/10261/363197

System biology and bioinformatics pipeline to identify comorbidities risk association: Neurodegenerative disorder case study

Autoři: Chowdhury, UN Ahmad, S Islam, MB a další

Přispěvatelé: Chowdhury, UN Ahmad, S Islam, MB a další

Zdroj: urn:ISSN:1932-6203 ; PLoS ONE, 16, 5 May, e0250660

Témata: 31 Biological Sciences, 3102 Bioinformatics and Computational Biology, 3105 Genetics, Neurodegenerative, Alzheimer's Disease, Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD), Neurosciences, Dementia, Acquired Cognitive Impairment, Aging, Brain Disorders, Genetics, 2.1 Biological and endogenous factors, Neurological, Humans, Computational Biology, Comorbidity, Alzheimer Disease, Neurodegenerative Diseases, Systems Biology, Gene Ontology, Gene Expression Profiling, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 3105 Genetics

Popis souboru: application/pdf

Relation: http://hdl.handle.net/1959.4/unsworks_76368; https://doi.org/10.1371/journal.pone.0250660

Dostupnost: http://hdl.handle.net/1959.4/unsworks_76368
https://unsworks.unsw.edu.au/bitstreams/56e91123-d01c-4298-856d-0590197a11c5/download
https://doi.org/10.1371/journal.pone.0250660

CompGO: an R package for comparing and visualizing Gene Ontology enrichment differences between DNA binding experiments

Autoři: Richard P. Harvey Romaric Bouveret Ashley J. Waardenberg a další

Zdroj: BMC Bioinformatics
BMC Bioinformatics, Vol 16, Iss 1, Pp 1-8 (2015)

Témata: 0301 basic medicine, Serum Response Factor, QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7, Jaccard Coefficient, anzsrc-for: 49 Mathematical sciences, Biochemistry, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Genetics, Hard Thresholding, Homeobox, Humans, anzsrc-for: 31 Biological Sciences, Biology (General), 10. No inequality, Molecular Biology, anzsrc-for: 46 Information and computing sciences, 0303 health sciences, Human Genome, anzsrc-for: 01 Mathematical Sciences, Genes, Homeobox, Computational Biology, DNA, Genomics, Computer Science Applications, Gene Ontology, Networking and Information Technology R&D (NITRD), Genes, 13. Climate action, Enrich Gene Ontology, anzsrc-for: 06 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 08 Information and Computing Sciences, Software, 31 Biological Sciences, Biotechnology

Popis souboru: application/pdf

Přístupová URL adresa: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-015-0701-2
https://pubmed.ncbi.nlm.nih.gov/26329719
https://doaj.org/article/c95ec453e9844c13a024c7b9d6af4f54
https://link.springer.com/content/pdf/10.1186%2Fs12859-015-0701-2.pdf
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4845484
https://pubmed.ncbi.nlm.nih.gov/26329719/
https://researchonline.jcu.edu.au/55658/
http://europepmc.org/articles/PMC4557902
https://paperity.org/p/74061677/compgo-an-r-package-for-comparing-and-visualizing-gene-ontology-enrichment-differences

Topological barrier to Cas12a activation by circular DNA nanostructures facilitates autocatalysis and transforms DNA/RNA sensing

Autoři: Deng, F Li, Y Yang, B a další

Zdroj: urn:ISSN:2041-1723 ; Nature Communications, 15, 1, 1818

Témata: 31 Biological Sciences, 3102 Bioinformatics and Computational Biology, Biotechnology, Genetics, Infectious Diseases, Cancer, DNA, Circular, RNA, CRISPR-Cas Systems, Guide, Helicobacter pylori, Nanostructures, Ribonucleoproteins, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology

Popis souboru: application/pdf

Relation: https://hdl.handle.net/1959.4/102737

Dostupnost: https://hdl.handle.net/1959.4/102737
https://unsworks.unsw.edu.au/bitstreams/a7b2ee9b-81f2-4989-b26c-82378b07fda0/download
https://doi.org/10.1038/s41467-024-46001-8

The activity of early-life gene regulatory elements is hijacked in aging through pervasive AP-1-linked chromatin opening

Autoři: Patrick, Ralph Naval-Sanchez, Marina Deshpande, Nikita a další

Zdroj: urn:ISSN:1550-4131 ; urn:ISSN:1932-7420 ; Cell Metabolism, 36, 8, 1858-1881.e23

Témata: 3101 Biochemistry and Cell Biology, 3102 Bioinformatics and Computational Biology, 31 Biological Sciences, Genetics, Aging, Human Genome, 1.1 Normal biological development and functioning, Animals, Transcription Factor AP-1, Chromatin, Mice, Humans, Inbred C57BL, Binding Sites, AP-1, CTCF, cell identity, development, maturation, polycomb repressive complex 2, redistribution, transcription factors, anzsrc-for: 3101 Biochemistry and Cell Biology, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 31 Biological Sciences, anzsrc-for: 0601 Biochemistry and Cell Biology, anzsrc-for: 1101 Medical Biochemistry and Metabolomics, anzsrc-for: 3205 Medical biochemistry and metabolomics

Relation: http://hdl.handle.net/1959.4/102642; https://doi.org/10.1016/j.cmet.2024.06.006

Dostupnost: http://hdl.handle.net/1959.4/102642
https://doi.org/10.1016/j.cmet.2024.06.006

Reanalysis and optimisation of bioinformatic pipelines is critical for mutation detection

Autoři: Ingrid E. Scheffer Velimir Gayevskiy Mark J. Cowley a další

Zdroj: Hum Mutat

Témata: 0301 basic medicine, de novo, anzsrc-for: 0604 Genetics, DNA Mutational Analysis, 32 Biomedical and Clinical Sciences, anzsrc-for: 1103 Clinical Sciences, 3105 Genetics, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, anzsrc-for: 32 Biomedical and Clinical Sciences, Genetics, 2.1 Biological and endogenous factors, Humans, developmental and epileptic encephalopathy, anzsrc-for: 31 Biological Sciences, clinical bioinformatics, Genetic Association Studies, whole genome sequencing, 0303 health sciences, Genome, Genome, Human, Human Genome, Computational Biology, High-Throughput Nucleotide Sequencing, Genomics, anzsrc-for: 3105 Genetics, Phenotype, anzsrc-for: 3202 Clinical sciences, Mutation, Brief Reports, anzsrc-for: 3102 Bioinformatics and Computational Biology, 31 Biological Sciences, Biotechnology, Human

Popis souboru: application/pdf

Přístupová URL adresa: https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/humu.23699
https://pubmed.ncbi.nlm.nih.gov/30556619
https://minerva-access.unimelb.edu.au/bitstream/handle/11343/253377/PMC6492103.pdf
https://findanexpert.unimelb.edu.au/scholarlywork/1362935-reanalysis-and-optimisation-of-bioinformatic-pipelines-is-critical-for-mutation-detection
https://jglobal.jst.go.jp/en/detail?JGLOBAL_ID=201902222334666917
https://www.scholars.northwestern.edu/en/publications/reanalysis-and-optimisation-of-bioinformatic-pipelines-is-critica
http://europepmc.org/abstract/MED/30556619
https://onlinelibrary.wiley.com/doi/pdf/10.1002/humu.23699

Pan-human consensus genome significantly improves the accuracy of RNA-seq analyses

Autoři: Benjamin Kaminow Sara Ballouz Jesse Gillis a další

Zdroj: Genome Res

Témata: Genome, Consensus, Genome, Human, Human Genome, Method, Genomics, 3105 Genetics, 3102 Bioinformatics and Computational Biology, anzsrc-for: 3105 Genetics, Cancer Genomics, anzsrc-for: 11 Medical and Health Sciences, Exome Sequencing, Genetics, anzsrc-for: 06 Biological Sciences, Humans, RNA-Seq, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, 31 Biological Sciences, Cancer, Human

Popis souboru: application/pdf

Přístupová URL adresa: https://genome.cshlp.org/content/early/2022/03/07/gr.275613.121.full.pdf
https://pubmed.ncbi.nlm.nih.gov/35256454

A robust experimental and computational analysis framework at multiple resolutions, modalities and coverages

Autoři: M. Tran S. Yoon M. Teoh a další

Přispěvatelé: M. Tran S. Yoon M. Teoh a další

Zdroj: Front Immunol
Frontiers in Immunology, Vol 13 (2022)

Témata: 0301 basic medicine, anzsrc-for: 1108 Medical Microbiology, Immunology, 32 Biomedical and Clinical Sciences, Bioengineering, Ligands, 3105 Genetics, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Cancer Genomics, anzsrc-for: 32 Biomedical and Clinical Sciences, interaction analysis, cell-cell interaction, Genetics, anzsrc-for: 1107 Immunology, anzsrc-for: 31 Biological Sciences, data integration, Cancer, anzsrc-for: 3204 Immunology, anzsrc-for: 3211 Oncology and Carcinogenesis, 0303 health sciences, Science & Technology, skin cancer, Sequence Analysis, RNA, Human Genome, anzsrc-for: 3101 Biochemistry and cell biology, RC581-607, 3211 Oncology and Carcinogenesis, 3. Good health, 3204 Immunology, anzsrc-for: 3105 Genetics, spatial, RNA, anzsrc-for: 3102 Bioinformatics and Computational Biology, Immunologic diseases. Allergy, Single-Cell Analysis, Transcriptome, Life Sciences & Biomedicine, Sequence Analysis, 31 Biological Sciences, Biotechnology

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Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/35967449
https://doaj.org/article/816a27d3e47a4d65b2429c5ae1c672ae
https://www.repository.cam.ac.uk/handle/1810/340102
https://doi.org/10.3389/fimmu.2022.911873
https://doi.org/10.17863/cam.87526

Robust mapping of spatiotemporal trajectories and cell–cell interactions in healthy and diseased tissues

Autoři: Duy Pham Xiao Tan Brad Balderson a další

Zdroj: Nat Commun
Nature Communications, Vol 14, Iss 1, Pp 1-25 (2023)

Témata: Neural Networks, 1.1 Normal biological development and functioning, Science, Gene Expression Profiling, Bioengineering, Cell Communication, Article, 3102 Bioinformatics and Computational Biology, Computer, Networking and Information Technology R&D (NITRD), Genetics, 2.1 Biological and endogenous factors, Neural Networks, Computer, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, Gene Expression Profiling/methods, Transcriptome, Software, Algorithms, 31 Biological Sciences, Cancer

Přístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38007580
https://doaj.org/article/90386dc9c14b4450ad2ce44635d342ec

The RNA Atlas expands the catalog of human non-coding RNAs

Autoři: Justine Nuytens Pavel Sumazin Gary P. Schroth a další

Zdroj: Lorenzi, L, Chiu, H S, Avila Cobos, F, Gross, S, Volders, P J, Cannoodt, R, Nuytens, J, Vanderheyden, K, Anckaert, J, Lefever, S, Tay, A P, de Bony, E J, Trypsteen, W, Gysens, F, Vromman, M, Goovaerts, T, Hansen, T B, Kuersten, S, Nijs, N, Taghon, T, Vermaelen, K, Bracke, K R, Saeys, Y, De Meyer, T, Deshpande, N P, Anande, G, Chen, T W, Wilkins, M R, Unnikrishnan, A, De Preter, K, Kjems, J, Koster, J, Schroth, G P, Vandesompele, J, Sumazin, P & Mestdagh, P 2021, 'The RNA Atlas expands the catalog of human non-coding RNAs', Nature Biotechnology, vol. 39, no. 11, pp. 1453-1465. https://doi.org/10.1038/s41587-021-00936-1
Nature Biotechnology

Témata: RNA, Untranslated, Human Genome, Messenger, Untranslated, 3105 Genetics, 3. Good health, 3102 Bioinformatics and Computational Biology, anzsrc-for: 3105 Genetics, MicroRNAs, Genetics, 2.1 Biological and endogenous factors, RNA, Humans, Long Noncoding, RNA, Long Noncoding, Generic health relevance, RNA, Messenger, anzsrc-for: 31 Biological Sciences, anzsrc-for: 3102 Bioinformatics and Computational Biology, Transcriptome, 31 Biological Sciences, Biotechnology

Přístupová URL adresa: https://zenodo.org/record/5909808/files/s41587-021-00936-1.pdf
https://pubmed.ncbi.nlm.nih.gov/34140680
https://www.scilit.net/article/e8f72da1ec95db8d06ba219b76929e96?action=show-references
https://www.nature.com/articles/s41587-021-00936-1.pdf
https://www.narcis.nl/publication/RecordID/oai%3Apure.amc.nl%3Apublications%2F41219244-6b7d-4a10-9920-3776fc670878
https://scholar.nycu.edu.tw/zh/publications/the-rna-atlas-expands-the-catalog-of-human-non-coding-rnas
https://biblio.ugent.be/publication/8715077
https://europepmc.org/article/MED/34140680

Infectious disease mRNA vaccines and a review on epitope prediction for vaccine design

Autoři: Cai, Xinhui Li, Jiao Jiao Liu, Tao a další

Zdroj: Briefings in Functional Genomics. 20:289-303

Témata: 0301 basic medicine, Coronaviruses, Messenger, Coronaviruses Vaccines, Machine Learning, 3102 Bioinformatics and Computational Biology, epitope prediction, Epitopes, Neoplasms, Machine Learning and Artificial Intelligence, anzsrc-for: 31 Biological Sciences, Vaccines, 0303 health sciences, Zika Virus Infection, other infectious diseases, 3 Good Health and Well Being, 3. Good health, mRNA vaccines, Infectious Diseases, Networking and Information Technology R&D (NITRD), 3.4 Vaccines, Virus Diseases, Influenza Vaccines, Patient Safety, anzsrc-for: 3102 Bioinformatics and Computational Biology, Infection, Algorithms, Biotechnology, COVID-19 Vaccines, anzsrc-for: 0604 Genetics, Bioengineering, Dengue Vaccines, Cancer Vaccines, Vaccine Related, 03 medical and health sciences, Biodefense, Diabetes Mellitus, Respiratory Syncytial Virus Vaccines, Animals, Humans, RNA, Messenger, Pandemics, SARS-CoV-2, Prevention, COVID-19, Computational Biology, Vector-Borne Diseases, Emerging Infectious Diseases, Communicable Disease Control, RNA, Immunization, Software, 31 Biological Sciences

Popis souboru: application/pdf

Přístupová URL adresa: https://academic.oup.com/bfg/article-pdf/20/5/289/40349787/elab027.pdf
https://pubmed.ncbi.nlm.nih.gov/34089044
https://pubmed.ncbi.nlm.nih.gov/34089044/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8194884
https://europepmc.org/article/PMC/PMC8194884
https://academic.oup.com/bfg/article/20/5/289/6292285
https://search.bvsalud.org/global-literature-on-novel-coronavirus-2019-ncov/resource/en/covidwho-1258749

Vertical decomposition with Genetic Algorithm for Multiple Sequence Alignment

Autoři: Naznin, F Sarker, R Essam, D

Zdroj: BMC Bioinformatics
BMC Bioinformatics, Vol 12, Iss 1, p 353 (2011)

Témata: 0301 basic medicine, Evolution, QH301-705.5, Computer applications to medicine. Medical informatics, 0206 medical engineering, anzsrc-for: 46 Information and Computing Sciences, R858-859.7, 02 engineering and technology, anzsrc-for: 49 Mathematical sciences, Biochemistry, 3105 Genetics, Evolution, Molecular, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, 46 Information and Computing Sciences, Humans, anzsrc-for: 31 Biological Sciences, Biology (General), Child, Molecular Biology, Base Sequence, anzsrc-for: 080201 Analysis of Algorithms and Complexity, anzsrc-for: 01 Mathematical Sciences, Molecular, Computational Biology, DNA, Sequence Analysis, DNA, anzsrc-for: 4602 Artificial Intelligence, Computer Science Applications, anzsrc-for: 3105 Genetics, 4602 Artificial Intelligence, anzsrc-for: 06 Biological Sciences, Generic health relevance, anzsrc-for: 3102 Bioinformatics and Computational Biology, anzsrc-for: 08 Information and Computing Sciences, Sequence Analysis, Sequence Alignment, Algorithms, 31 Biological Sciences, Research Article

Popis souboru: application/pdf

Přístupová URL adresa: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-12-353
https://pubmed.ncbi.nlm.nih.gov/21867510
https://doaj.org/article/d87d605f0ff94138b74349317038969c
http://www.biomedcentral.com/1471-2105/12/353
https://link.springer.com/article/10.1186%2F1471-2105-12-353/metrics
https://dblp.uni-trier.de/db/journals/bmcbi/bmcbi12.html#NazninSE11
https://link.springer.com/article/10.1186/1471-2105-12-353/tables/8
http://europepmc.org/articles/PMC3180391
https://doi.org/10.1186/1471-2105-12-353

Transcript- and annotation-guided genome assembly of the European starling

Autoři: Katarina C. Stuart Richard J. Edwards Yuanyuan Cheng a další

Zdroj: Mol Ecol Resour
Stuart, K, Edwards, R, Cheng, Y, Warren, W, Burt, D, Sherwin, W, Hofmeister, N, Werner, S, Ball, G F, Bateson, M, Brandley, M, Buchanan, K L, Cassey, P, Clayton, D F, De Meyer, T, Meddle, S & Rollins, L 2022, ' Transcript-and annotation-guided genome assembly of the European starling ', Molecular Ecology Resources, vol. 22, no. 8, pp. 3141-3160 . https://doi.org/10.1111/1755-0998.13679
MOLECULAR ECOLOGY RESOURCES

Témata: 0301 basic medicine, Sturnus vulgaris, genome annotation, assessment, 0206 medical engineering, 02 engineering and technology, full-length transcripts, 3105 Genetics, 3102 Bioinformatics and Computational Biology, 03 medical and health sciences, Genetics, Animals, anzsrc-for: 31 Biological Sciences, genome, Genome, Human Genome, RESOURCE ARTICLES, Australia, Biology and Life Sciences, Molecular Sequence Annotation, Genomics, 15. Life on land, STURNUS-VULGARIS, PAN-GENOME, genome assessment, EVOLUTION, anzsrc-for: 3105 Genetics, INSIGHTS, FOS: Biological sciences, DISCOVERY, POPULATION TRENDS, Starlings, anzsrc-for: 06 Biological Sciences, genome assembly, VISUALIZATION, anzsrc-for: 3102 Bioinformatics and Computational Biology, 31 Biological Sciences, Biotechnology

Popis souboru: application/pdf

Přístupová URL adresa: https://www.biorxiv.org/content/biorxiv/early/2021/05/26/2021.04.07.438753.full.pdf
https://pubmed.ncbi.nlm.nih.gov/35763352
https://www.biorxiv.org/content/biorxiv/early/2021/04/08/2021.04.07.438753.full.pdf
https://www.biorxiv.org/content/10.1101/2021.04.07.438753v1
https://europepmc.org/article/PPR/PPR308684
https://hdl.handle.net/20.500.11820/dc3244ac-66ae-492a-a580-5587fe5bfd4f
https://www.pure.ed.ac.uk/ws/files/286856300/Molecular_Ecology_Resources_2022_Stuart_Transcript_and_annotation_guided_genome_assembly_of_the_European_starling.pdf
https://biblio.ugent.be/publication/01GSFWE7672J6V4NV5EZGAGVRJ
http://hdl.handle.net/1854/LU-01GSFWE7672J6V4NV5EZGAGVRJ
http://doi.org/10.1111/1755-0998.13679
https://biblio.ugent.be/publication/01GSFWE7672J6V4NV5EZGAGVRJ/file/01GSG0WK7A7RAVS9PQQHFHV9DY