Search Results - algorithm framework genomewide modeling translation network

An algorithmic framework for genome-wide modeling and analysis of translation networks

Authors: Mehra, Amit Hatzimanikatis, Vassily

Subject Terms: algorithm framework genomewide modeling translation network

Relation: https://infoscience.epfl.ch/record/98668/files/vh-2006-5.pdf; Biophysical Journal; https://infoscience.epfl.ch/handle/20.500.14299/238819

Availability: https://doi.org/10.1529/biophysj.105.062521
https://infoscience.epfl.ch/handle/20.500.14299/238819
https://hdl.handle.net/20.500.14299/238819

Recent Landscape of Deep Learning Intervention and Consecutive Clustering on Biomedical Diagnosis.

Authors: Mukherji, Ayan Mondal, Arindam Banerjee, Rajib et al.

Source: Artificial Intelligence & Applications (2811-0854); Oct2025, Vol. 3 Issue 4, p359-377, 19p

Subject Terms: DEEP learning, DNA methylation, EPIGENETICS, MEDICAL informatics, METHYLATION, CLUSTER analysis (Statistics), DIAGNOSIS, ARTIFICIAL neural networks

Investigating the potential causal link between BPA and ovarian carcinogenesis: a network toxicology and mendelian randomization study on the CTRC/PRDX1/SKP1 pathway.

Authors: Shi, Zunlin Li, Zhi Yang, Fan

Source: Journal of Ovarian Research; 10/17/2025, Vol. 18 Issue 1, p1-20, 20p

Subject Terms: OVARIAN cancer, BISPHENOL A, MENDELIAN randomization, TOXICOGENOMICS, CELL communication, CARCINOGENESIS, INFLAMMATION, ENVIRONMENTAL exposure

Characterization of holins, the membrane proteins of coliphage ASEC2201: a genomewide in silico approach.

Authors: Saeed, Humaira Padmesh, Sudhaker Singh, Aditi et al.

Source: Frontiers in Microbiology; 2025, p1-14, 14p

Subject Terms: ESCHERICHIA coli, MEMBRANE proteins, GENOMICS, BACTERIOPHAGES, BIOINFORMATICS, CELL-penetrating peptides, ANTI-infective agents

Breeding 4.0 vis-à-vis application of artificial intelligence (AI) in crop improvement: an overview.

Authors: Ansari, Rounaq Manna, Anindita Hazra, Soham et al.

Source: New Zealand Journal of Crop & Horticultural Science; Dec2025, Vol. 53 Issue 4, p812-854, 43p

Subject Terms: PLANT breeding, CULTIVARS, ALLELES in plants, ARTIFICIAL intelligence, CROP improvement

AI in Thyroid Cancer Diagnosis: Techniques, Trends, and Future Directions.

Authors: Habchi, Yassine Himeur, Yassine Kheddar, Hamza et al.

Source: Systems; Oct2023, Vol. 11 Issue 10, p519, 48p

Subject Terms: DEEP learning, CANCER diagnosis, ARTIFICIAL neural networks, BOOSTING algorithms, ARTIFICIAL intelligence, SUPERVISED learning

YBX1 regulation of alveolar type II epithelial cells in idiopathic pulmonary fibrosis: mechanistic insights and small-molecule drug screening.

Authors: He, Yijie Li, Jin Xie, Yibo et al.

Source: Journal of Translational Medicine; 11/18/2025, Vol. 23 Issue 1, p1-28, 28p

Subject Terms: IDIOPATHIC pulmonary fibrosis, VIRTUAL high-throughput screening (Drug development), PREDICTION models, TRANSCRIPTION factors, PULMONARY alveoli, MOLECULAR interactions, DRUG discovery, IMMUNOLOGY

Theoretical Framework and Methodological Approach for Investigating Potential Associations Between Long COVID and Autism Spectrum Disorder Prevalence.

Authors: Rudroff, Thorsten

Source: NeuroSci; Sep2025, Vol. 6 Issue 3, p80, 31p

A framework for the targeted recruitment of crop-beneficial soil taxa based on network analysis of metagenomics data.

Authors: Berihu, Maria Somera, Tracey S. Malik, Assaf et al.

Source: Microbiome; 1/12/2023, Vol. 11 Issue 1, p1-21, 21p

A priori, de novo mathematical exploration of gene expression mechanism via regression viewpoint with briefly cataloged modeling antiquity.

Authors: Jauhari, Shaurya Rizvi, S. A. M.

Source: International Journal of Biomathematics; Jan2017, Vol. 10 Issue 1, p-1, 15p

Subject Terms: GENE expression, ALGORITHMS, COMPUTER simulation, GENETIC transcription, GENETIC translation, MATHEMATICAL models

Clinical application of single‐cell RNA sequencing in disease and therapy.

Authors: Nadukkandy, Aisha Shigna Kalaiselvan, Sowmiya Lin, Lin et al.

Source: Clinical & Translational Medicine; Nov2025, Vol. 15 Issue 11, p1-37, 37p

Subject Terms: RNA sequencing, BIOMARKERS, TRANSCRIPTOMES, ETIOLOGY of diseases, DRUG development, CLINICAL medicine, INDIVIDUALIZED medicine, DEEP learning

Molecular breeding approaches for sustainable rice blast management: recent advances and challenges.

Authors: Ragulakollu, Sravanthi Loganathan, Arul Swaminatham, Manonmani et al.

Source: Frontiers in Plant Science; 2025, p1-33, 33p

Subject Terms: RICE blast disease, PYRICULARIA oryzae, CRISPRS, SUSTAINABLE agriculture, GENETIC markers, GENOME editing

CRISPR/Cas9 in colorectal cancer: Revolutionizing precision oncology through genome editing and targeted therapeutics.

Authors: Alhasso, Bahjat Shareef, Abdulkareem Baldaniya, Lalji et al.

Source: Iranian Journal of Basic Medical Sciences; Oct2025, Vol. 28 Issue 10, p1279-1300, 22p

Subject Terms: COLORECTAL cancer, GENOME editing, CRISPRS, DRUG target, BIOMARKERS, ONCOLOGY, TUMOR suppressor genes, CHEMOSENSITIZERS

Efficient Detection and Characterization of Targets of Natural Selection Using Transfer Learning Open Access.

Authors: Arnab, Sandipan Paul Santos, Andre Luiz Campelo dos Fumagalli, Matteo et al.

Source: Molecular Biology & Evolution; May2025, Vol. 42 Issue 5, p1-28, 28p

Subject Terms: CONVOLUTIONAL neural networks, NATURAL selection, FEATURE extraction, POPULATION transfers, HAPLOTYPES

Advances in the application of nomograms for patients with gastric cancer associated with peritoneal metastasis.

Authors: Jin, Shiyang Wang, Zeshen Wang, Qiancheng et al.

Source: Holistic Integrative Oncology; 5/7/2025, Vol. 4 Issue 1, p1-11, 11p

Subject Terms: STATISTICAL models, RISK assessment, STOMACH tumors, PREDICTION models, RADIOMICS, COMPUTED tomography, TUMOR markers, METASTASIS, GENE expression, DEEP learning, PERITONEUM tumors, INDIVIDUALIZED medicine, MACHINE learning, ALGORITHMS, OVERALL survival, DISEASE risk factors, DISEASE complications

Revolutionizing anesthesia: AI-driven protein structure prediction and its clinical impact.

Authors: Zhang, Yuqi Wu, Yan Wang, Keqin et al.

Source: Anesthesiology & Perioperative Science; Sep2025, Vol. 3 Issue 3, p1-6, 6p

Beyond Transgenic Mice: Emerging Models and Translational Strategies in Alzheimer's Disease.

Authors: Alexandra Lopes, Paula Guil-Guerrero, José L.

Source: International Journal of Molecular Sciences; Jun2025, Vol. 26 Issue 12, p5541, 51p

Subject Terms: ALZHEIMER'S disease, DRUG repositioning, DROSOPHILA melanogaster, TRANSLATIONAL research, CAENORHABDITIS elegans, TRANSGENIC mice

Identifying pathological myopia associated genes with GenePlexus in protein-protein interaction network.

Authors: Luo, Yuanyuan Wang, Yihan Liu, Lin et al.

Source: Frontiers in Genetics; 2025, p1-12, 12p

Subject Terms: VISION disorders, MYOPIA, DEGENERATION (Pathology), DRUG target, BIOMARKERS

Equitable machine learning counteracts ancestral bias in precision medicine.

Authors: Smith, Leslie A. Cahill, James A. Lee, Ji-Hyun et al.

Source: Nature Communications; 3/10/2025, Vol. 16 Issue 1, p1-17, 17p

Subject Terms: INDIVIDUALIZED medicine, LIFE sciences, MACHINE learning, UTERINE cancer, ARTIFICIAL intelligence, BREAST

Bayesian Network Marker Selection via the Thresholded Graph Laplacian Gaussian Prior.

Authors: Qingpo Cai Jian Kang Tianwei Yu

Source: Bayesian Analysis; 2020, Vol. 15 Issue 1, p79-102, 24p

Subject Terms: GENE regulatory networks, BAYESIAN analysis, ALGORITHMS, GRAPH theory, LANGEVIN equations