Search Results - Terminal restriction fragment length polymorphism data analysis

Terminal Restriction Fragment Length Polymorphism Data Analysis for Quantitative Comparison of Microbial Communities

Authors: Blackwood, Christopher B., author Marsh, Terry, author Kim, Sang-Hoon, author et al.

Source: Applied and Environmental Microbiology. 69:926-932

Subject Terms: Crops, Agricultural, 2. Zero hunger, Bacteria, Statistics as Topic, Sensitivity and Specificity, Zea mays, molecular genetic technique, Bioreactors, statistical analysis, Data Interpretation, Statistical, environmental samples, Cluster Analysis, fluorescence baseline, Polymorphism, Restriction Fragment Length, Soil Microbiology, Medicago sativa

File Description: born digital; articles; application/pdf

Access URL: https://aem.asm.org/content/69/2/926.full.pdf
https://pubmed.ncbi.nlm.nih.gov/12571013
https://europepmc.org/article/MED/12571013
https://pubag.nal.usda.gov/catalog/1409902
http://drosophila.biology.kent.edu/users/cblackwo/pdfs/Blackwood_etal_2003_AEM.pdf
https://dialnet.unirioja.es/servlet/articulo?codigo=319771
https://lter.kbs.msu.edu/citations/2571

Profile of Gut Bacteria in Hypertensive Patients Based on Terminal Restriction Fragment Length Polymorphism Analysis

Authors: Ririn Herni Putri Rika Indri Astuti Sri Budiarti

Source: Hayati Journal of Biosciences, Vol 30, Iss 3 (2023)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://journal.ipb.ac.id/index.php/hayati/article/view/41970; https://doaj.org/toc/1978-3019; https://doaj.org/toc/2086-4094

Access URL: https://doaj.org/article/bc814be4fc124ae4acc1d4eb2ff4ed27

Terminal restriction fragment length polymorphism data analysis.

Authors: Grant A Ogilvie LA

Source: Applied and environmental microbiology [Appl Environ Microbiol] 2003 Oct; Vol. 69 (10), pp. 6342; author reply 6342-3.

Publication Type: Comment; Letter

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 7605801 Publication Model: Print Cited Medium: Print ISSN: 0099-2240 (Print) Linking ISSN: 00992240 NLM ISO Abbreviation: Appl Environ Microbiol Subsets: MEDLINE

MeSH Terms: Data Interpretation, Statistical* , Polymorphism, Restriction Fragment Length* , Soil Microbiology*, Bacteria/*classification, Bacteria/genetics ; Bacteria/isolation & purification ; Cluster Analysis ; Ecosystem

Tools for T-RFLP data analysis using Excel

Authors: Fredriksson, Nils J Hermansson, Malte Wilén, Britt-Marie

Source: BMC Bioinformatics. 15

Subject Terms: Molecular Biology, Molekylärbiologi, Terminal restriction fragment length polymorphism data analysis, Microbial ecology

File Description: electronic

Access URL: https://gup.ub.gu.se/publication/208163
https://gup.ub.gu.se/publication/208163

Formation of Pseudo-Terminal Restriction Fragments, a PCR-Related Bias Affecting Terminal Restriction Fragment Length Polymorphism Analysis of Microbial Community Structure

Authors: Egert, Markus Friedrich, Michael W.

Source: Applied and Environmental Microbiology. 69:2555-2562

Subject Terms: DNA, Bacterial, Genetics, Microbial, 0301 basic medicine, 0303 health sciences, Bacteria, Base Sequence, Models, Genetic, Archaea, DNA, Ribosomal, Polymerase Chain Reaction, Genes, Archaeal, Coleoptera, 03 medical and health sciences, DNA, Archaeal, Genes, Bacterial, Animals, Nucleic Acid Conformation, Ecosystem, Polymorphism, Restriction Fragment Length

Access URL: https://aem.asm.org/content/69/5/2555.full.pdf
https://pubmed.ncbi.nlm.nih.gov/12732521
https://europepmc.org/articles/PMC154551
https://www.ncbi.nlm.nih.gov/pubmed/12732521
https://aem.asm.org/content/69/5/2555.full.pdf
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC154551/
https://pubmed.ncbi.nlm.nih.gov/12732521/
https://ci.nii.ac.jp/naid/10027792696

Long-term enclosure at heavy grazing grassland affects soil nitrification via ammonia-oxidizing bacteria in Inner Mongolia

Authors: Qing Chen Yuntao Shang Rui Zhu et al.

Source: Sci Rep
Scientific Reports, Vol 12, Iss 1, Pp 1-11 (2022)

Subject Terms: Organic chemistry, Nitrogen cycle, Biochemistry, Gene, Agricultural and Biological Sciences, Soil, Soil water, Phylogeny, Soil Microbiology, 2. Zero hunger, Ecology, Mineralization (soil science), Betaproteobacteria, Life Sciences, 04 agricultural and veterinary sciences, Nitrification, Grassland, Polymerase chain reaction, Grazing, Chemistry, Physical Sciences, Environmental chemistry, Medicine, Restriction fragment length polymorphism, Oxidation-Reduction, Nitrogen, Science, Soil Science, Article, Environmental science, Ammonia, Biochemistry, Genetics and Molecular Biology, Animals, RNA Sequencing Data Analysis, Molecular Biology, Biology, Sheep, Soil Fertility, Bacteria, Terminal restriction fragment length polymorphism, Marine Microbial Diversity and Biogeography, 15. Life on land, Archaea, Agronomy, FOS: Biological sciences, Environmental Science, 0401 agriculture, forestry, and fisheries, Soil Carbon Dynamics and Nutrient Cycling in Ecosystems

Access URL: https://pubmed.ncbi.nlm.nih.gov/36509810
https://doaj.org/article/328f04b2bb3246da94360117847a7571

Impact of T-RFLP data analysis choices on assessments of microbial community structure and dynamics

Authors: Fredriksson, Johan Hermansson, Malte Wilen, Britt-Marie

Source: BMC Bioinformatics. 15(360)

Subject Terms: Normalization, Terminal restriction fragment polymorphism analysis, Alignment, Bacterial community structure and dynamics

File Description: electronic

Access URL: https://research.chalmers.se/publication/211063
http://publications.lib.chalmers.se/records/fulltext/211063/local_211063.pdf

Analysis of Rumen Microbial Population of Cattle Given Silage and Probiotics Using Terminal Restriction Fragment Length Polymorphism

Authors: RONI RIDWAN YANTYATI WIDYASTUTI SRI BUDIARTI et al.

Source: Microbiology Indonesia, Vol 3, Iss 3 (2010)

Subject Terms: silage, probiotics, rumen ecology, Evar, T-RFLP, 16S-rDN, Microbiology, QR1-502

File Description: electronic resource

Relation: https://jurnal.permi.or.id/index.php/mionline/article/view/14; https://doaj.org/toc/1978-3477; https://doaj.org/toc/2087-8575

Access URL: https://doaj.org/article/20f4484951b34ec98c13295b4b948c6a

Bacterial fingerprinting of faecal samples of pigs supplemented with plant sourced feed additives.

Authors: Samanta, A. K. Chikkerur, J. Kolte, A. P. et al.

Source: Indian Journal of Animal Research. Jun2019, Vol. 53 Issue 6, p807-813. 7p.

Subjects: Feed additives, Restriction fragment length polymorphisms, Swine, Antibiotic residues

Technicalities and Glitches of Terminal Restriction Fragment Length Polymorphism (T-RFLP)

Authors: Om Prakash Kiran N. Mahale Girish Kulkarni et al.

Source: Indian Journal of Microbiology. 54:255-261

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences

Access URL: https://europepmc.org/articles/pmc4039717?pdf=render
https://pubmed.ncbi.nlm.nih.gov/24891731
https://link.springer.com/article/10.1007/s12088-014-0461-0
https://pubmed.ncbi.nlm.nih.gov/24891731/
https://www.ncbi.nlm.nih.gov/pubmed/24891731
https://europepmc.org/articles/PMC4039717
http://nccs.sciencecentral.in/362/

Technicalities and Glitches of Terminal Restriction Fragment Length Polymorphism (T-RFLP).

Authors: Prakash, Om Pandey, Prashant Kulkarni, Girish et al.

Source: Indian Journal of Microbiology; Sep2014, Vol. 54 Issue 3, p255-261, 7p

Subject Terms: RESTRICTION fragment length polymorphisms, NUCLEIC acid isolation methods, POLYMERASE chain reaction, MICROBIAL ecology, NUCLEOTIDE sequencing, REPRODUCIBLE research

The first decade of terminal restriction fragment length polymorphism (T-RFLP) in microbial ecology

Authors: Blaž STRES

Source: Acta Agriculturae Slovenica, Vol 88, Iss 2, Pp 65-73 (2006)

Subject Terms: microbiology, microbial ecology, molecular genetics, t-rflp, Agriculture

File Description: electronic resource

Relation: https://journals.uni-lj.si/aas/article/view/15029; https://doaj.org/toc/1854-1941

Access URL: https://doaj.org/article/af2cf9de23994d498090c16b0225634e

Development and application of a T-RFLP data analysis method using correlation coefficient matrices

Authors: Yoshihisa Yamashita Yukie Shibata Yoshio Nakano et al.

Source: Journal of Microbiological Methods. 75:501-505

Subject Terms: DNA, Bacterial, 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Bacteria, Genetic Techniques, RNA, Ribosomal, 16S, DNA, Ribosomal, Phylogeny, Polymorphism, Restriction Fragment Length

Access URL: https://pubmed.ncbi.nlm.nih.gov/18775752
https://www.ncbi.nlm.nih.gov/pubmed/18775752
https://kyushu-u.pure.elsevier.com/ja/publications/development-and-application-of-a-t-rflp-data-analysis-method-usin
https://www.sciencedirect.com/science/article/abs/pii/S0167701208003011
http://www.sciencedirect.com/science/article/pii/S0167701208003011
https://europepmc.org/article/MED/18775752

Quantitative analysis of Terminal Restriction Fragment Length Polymorphism (T-RFLP) microbial community profiles: peak height data showed to be more reproducible than peak area

Authors: Caffaro-Filho, Roberto A. Fantinatti-Garboggini, Fabiana Durrant, Lucia R.

Source: Brazilian Journal of Microbiology, Volume: 38, Issue: 4, Pages: 736-738, Published: DEC 2007. December 2007

Subject Terms: Terminal Restriction Fragment Length Polymorphism (T-RFLP), Molecular analysis, Microbial community, Análise molecular, Comunidades microbianas

File Description: text/html

Access URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822007000400027&lng=en&tlng=en

Terminal restriction fragment length polymorphism data analysis

Authors: Grant, A. Ogilvie, Lesley

Source: Grant, A & Ogilvie, L 2003, 'Terminal restriction fragment length polymorphism data analysis', Applied and Environmental Microbiology, vol. 69, no. 10, pp. 6342-6343.

Relation: info:eu-repo/semantics/altIdentifier/pissn/0099-2240; info:eu-repo/semantics/altIdentifier/eissn/1098-5336

Availability: https://research.brighton.ac.uk/en/publications/481abf7a-568d-43df-a37e-038ff7ba4c47

16S rRNA terminal restriction fragment length polymorphism for the characterization of the nasopharyngeal microbiota.

Authors: Silvio D Brugger Laurence Frei Pascal M Frey et al.

Source: PLoS ONE, Vol 7, Iss 12, p e52241 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23284951/pdf/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/59329a28c8584c69b9fca502c7220b6c

Terminal restriction fragment length polymorphism data analysis

Authors: Grant, Alastair Ogilvie, Lesley A. Blackwood, CB et al.

Relation: Grant, Alastair, Ogilvie, Lesley A., Blackwood, CB, Marsh, T, Kim, S-H and Paul, EA (2003) Terminal restriction fragment length polymorphism data analysis. Applied and Environmental Microbiology, 69 (10). pp. 6342-6343. ISSN 0099-2240

Availability: https://ueaeprints.uea.ac.uk/id/eprint/31152/

Statistical data analysis of bacterial t-RFLP profiles in forensic soil comparisons

Authors: Irene Kuiper Frederike C.A. Quaak

Source: Forensic Science International. 210:96-101

Subject Terms: DNA, Bacterial, 03 medical and health sciences, 0302 clinical medicine, Bacteria, Electrophoresis, Capillary, Reproducibility of Results, DNA, Ribosomal, Polymerase Chain Reaction, Polymorphism, Restriction Fragment Length, Soil Microbiology, Decision Support Techniques

Access URL: https://pubmed.ncbi.nlm.nih.gov/21377814
https://www.cabdirect.org/cabdirect/abstract/20113246134
http://www.forensischinstituut.nl/Images/quaak-f.c.a.statistical-data-analysis-of-bacterial-t-rflp-profiles-in-forensic-soil-comparisons-2011_tcm119-434811.pdf
http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24310733
http://www.sciencedirect.com/science/article/pii/S0379073811000673
https://www.sciencedirect.com/science/article/pii/S0379073811000673
https://europepmc.org/article/MED/21377814

Long-Term Succession of Structure and Diversity of a Biofilm Formed in a Model Drinking Water Distribution System

Authors: Martiny, A. C Jorgensen, T. M Albrechtsen, H.-J. et al.

Source: Applied and Environmental Microbiology. 69(11)

Subject Terms: bacteria, biofilms, cloning, molecular, dna, ribosomal, ecosystem, fresh water, microscopy, confocal, models, biological, molecular sequence data, phylogeny, polymorphism, restriction fragment length, rna, ribosomal, 16s, sequence analysis, dna, variation (genetics), water supply

File Description: application/pdf

Access URL: https://escholarship.org/uc/item/43x4n9k2
https://escholarship.org/content/qt43x4n9k2/qt43x4n9k2.pdf

An Improved Sequence-aided T-RFLP Analysis of Bacterial Succession During Oyster Mushroom Substrate Preparation

Authors: Dániel Szili Balázs Vajna Adrienn Nagy et al.

Source: Microbial Ecology. 64:702-713

Subject Terms: DNA, Bacterial, 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Bacteria, Molecular Sequence Data, Sequence Analysis, DNA, Pleurotus, Ecosystem, Phylogeny, Polymorphism, Restriction Fragment Length, Soil Microbiology

Access URL: https://pubmed.ncbi.nlm.nih.gov/22614940
https://dialnet.unirioja.es/servlet/articulo?codigo=4029942
https://www.ncbi.nlm.nih.gov/pubmed/22614940
https://link.springer.com/article/10.1007/s00248-012-0063-5/fulltext.html
https://link.springer.com/content/pdf/10.1007%2Fs00248-012-0063-5.pdf