Search Results - Python Software Package

DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology

Authors: Iverson Conrado Bezerra Jéssika de Oliveira Viana Karen Cacilda Weber et al.

Source: J Chem Inf Model

Subject Terms: Data Analysis, Internet, Application Note, Computational Biology, Proteins, Molecular Dynamics Simulation, Ligands, Software

Access URL: https://pubmed.ncbi.nlm.nih.gov/40835585
https://pmc.ncbi.nlm.nih.gov/articles/PMC12421658/
https://doi.org/10.1021/acs.jcim.5c01270
https://pubmed.ncbi.nlm.nih.gov/40835585/

PyPRS: A Python Software Package for Parallel Ranking and Selection Procedures

Authors: Song Huang Guangxin Jiang Ying Zhong

Source: INFORMS Journal on Computing.

Code and Data Repository for PyPRS: A Python Software Package for Parallel Ranking and Selection Procedures

Authors: Song Huang Zhong Ying Guangxin Jiang

Source: INFORMS Journal on Computing.

RockDisc-Gen: A python software package for rock discontinuity generation

Authors: Yujie Su Hong Gao Han Meng et al.

Source: SoftwareX, Vol 32, Iss , Pp 102369- (2025)

Subject Terms: Rock discontinuity generation, Deep learning, Monte Carlo method, Computer software, QA76.75-76.765

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352711025003358; https://doaj.org/toc/2352-7110

Access URL: https://doaj.org/article/25dc7da5dc2640cbae9b88a4074c4168

Modelling rainfall with a Bartlett–Lewis process: pyBL (v1.0.0), a Python software package and an application with short records

Authors: C.-L. Wei P.-C. Chen C.-Y. Tseng et al.

Source: eISSN
Geoscientific Model Development, Vol 18, Pp 1357-1373 (2025)

Subject Terms: QE1-996.5, 13. Climate action, Geology

File Description: application/pdf

Access URL: https://egusphere.copernicus.org/preprints/2024/egusphere-2024-1918/
https://gmd.copernicus.org/articles/18/1357/2025/
https://doaj.org/article/25fab5640b7a4251b96d9cf4d67a282d

Python Software Package for Automatic Generation and Verification of BPA Simulation Data Aimed at Load Flow Analysis

Authors: Jifan Zhang Hengxu Zhang Xiaohan Shi et al.

Source: 2023 International Conference on Power System Technology (PowerCon). :1-5

DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology.

Authors: Bezerra, Iverson Conrado de Oliveira Viana, Jéssika Weber, Karen Cacilda et al.

Source: Journal of Chemical Information & Modeling. 9/8/2025, Vol. 65 Issue 17, p8901-8910. 10p.

pyFIRI — A free and open source Python software package of the non-auroral Earth’s lower ionosphere

Authors: Oleg Zolotov Yulia Romanovskaya Maria Knyazeva

Source: SoftwareX, Vol 16, Iss , Pp 100885- (2021)

Subject Terms: Python package, FIRI model, D-region, Lower ionosphere of the Earth, Computer software, QA76.75-76.765

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352711021001461; https://doaj.org/toc/2352-7110

Access URL: https://doaj.org/article/5a9386a5e89642a08e63dc3a4518cb41

Version 2.0 - pyFIRI — A free and open source Python software package of the non-auroral Earth’s lower ionosphere

Authors: Oleg Zolotov Yulia Romanovskaya Maria Knyazeva

Source: SoftwareX, Vol 20, Iss , Pp 101263- (2022)

Subject Terms: FIRI model, D-region, Earth’s lower ionosphere, Python, Computer software, QA76.75-76.765

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352711022001819; https://doaj.org/toc/2352-7110

Access URL: https://doaj.org/article/262f8fe6069341e886b71ef0cfaf3aa5

PACMan: A software package for automated single-cell chlorophyll fluorometry

Authors: Pontén, Olle Xiao, Linhong Kutter, Jeanne et al.

Source: Science for Life Laboratory – a national resource center for high–throughput molecular bioscience Cytometry Part A. 105(3):203-213

Subject Terms: Chlamydomonas reinhardtii, microalgae, microfluidics, microscopy automation, MICROSCOPY-PAM, pulse-amplitude-modulated chlorophyll fluorometry, Symbiodiniaceae

File Description: electronic

Access URL: https://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-528379
https://doi.org/10.1002/cyto.a.24808

SaddleScape V1.0: A Python Package for Constructing Solution Landscapes via High-index Saddle Dynamics

Authors: Liu, Yuyang Su, Hua Xiao, Zixiang et al.

Subject Terms: Numerical Analysis, FOS: Mathematics, Numerical Analysis (math.NA)

Access URL: http://arxiv.org/abs/2601.01081

PyThea: An open-source software package to perform 3D reconstruction of coronal mass ejections and shock waves

Authors: Kouloumvakos, Athanasios Rodríguez-García, Laura Gieseler, Jan et al.

Contributors: Kouloumvakos, Athanasios Rodríguez-García, Laura Gieseler, Jan et al.

Source: Frontiers in Astronomy and Space Sciences, Vol 9 (2022)
Frontiers in Astronomy and Space Sciences

Subject Terms: python software package, shock wave, ta115, heliophysics, remote-sensing solar observations, QC801-809, solar corona, Astronomy, Geophysics. Cosmic physics, Astronomy, Space science, QB1-991, 01 natural sciences, 0103 physical sciences, coronal mass ejection

File Description: application/pdf

Access URL: https://doaj.org/article/d737967c304542a9b50cffcef31a609a
http://hdl.handle.net/10138/352960

A Python diagnostics package for evaluation of Madden–Julian Oscillation (MJO) teleconnections in subseasonal-to-seasonal (S2S) forecast systems

Authors: Cristiana Stan Saisri Kollapaneni Andrea M. Jenney et al.

Source: Geoscientific Model Development. 18:7969-7985

File Description: application/pdf

Access URL: https://gmd.copernicus.org/articles/18/7969/2025/
https://doi.org/10.5194/gmd-18-7969-2025

Constraint Network Analysis (CNA): A Python Software Package for Efficiently Linking Biomacromolecular Structure, Flexibility, (Thermo-)Stability, and Function

Authors: Christopher Pfleger Prakash Chandra Rathi Doris L. Klein et al.

Source: Journal of Chemical Information and Modeling. 53:1007-1015

Subject Terms: Models, Molecular, 0301 basic medicine, Protein Folding, 0303 health sciences, Protein Stability, Temperature, Ligands, Protein Engineering, Small Molecule Libraries, 03 medical and health sciences, Animals, Thermodynamics, Computer Simulation, Muramidase, Chickens, Hydrophobic and Hydrophilic Interactions, Software

Access URL: https://pubmed.ncbi.nlm.nih.gov/23517329

Pycheron: A Python Software Package for Waveform QC

Authors: Katherine Aur

Source: Proposed for presentation at the Nuclear Explosion Monitoring (NEM) Program Review Meeting held March 15 - February 19, 2021 in Virtual..

A universal tool for visualisation of networks and trees in Python.

Authors: Zanini F; School of Clinical Medicine, University of New South Wales, Sydney, New South Wales, 2052, Australia.; Ecology & Evolution Research Centre, University of New South Wales, Sydney, NSW, 2052, Australia.; UNSW Cellular Genomics Futures Institute, UNSW, NSW, 2052, Australia.

Source: F1000Research [F1000Res] 2025 Dec 09; Vol. 14, pp. 1377. Date of Electronic Publication: 2025 Dec 09 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: F1000 Research Ltd Country of Publication: England NLM ID: 101594320 Publication Model: eCollection Cited Medium: Internet ISSN: 2046-1402 (Electronic) Linking ISSN: 20461402 NLM ISO Abbreviation: F1000Res Subsets: MEDLINE

MeSH Terms: Software* , Computer Graphics* , Programming Languages*

NLMpy: a python software package for the creation of neutral landscape models within a general numerical framework

Authors: Thomas R. Etherington E. Penelope Holland David O'Sullivan

Source: Methods in Ecology and Evolution. 6:164-168

Subject Terms: 0106 biological sciences, 15. Life on land, 01 natural sciences

Development of a power flow software for distribution system analysis based on rectangular voltage using python software package

Authors: Lukmanul Hakim Muhamad Wahidi Trisno Handoko et al.

Source: 2014 6th International Conference on Information Technology and Electrical Engineering (ICITEE). :1-5

Subject Terms: 4. Education, 0211 other engineering and technologies, 0202 electrical engineering, electronic engineering, information engineering, 02 engineering and technology

rcsb-api: Python Toolkit for Streamlining Access to RCSB Protein Data Bank APIs.

Authors: Piehl DW Vallat B Truong I et al.

Source: Journal of molecular biology [J Mol Biol] 2025 Aug 01; Vol. 437 (15), pp. 168970. Date of Electronic Publication: 2025 Jan 31.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 2985088R Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1089-8638 (Electronic) Linking ISSN: 00222836 NLM ISO Abbreviation: J Mol Biol Subsets: MEDLINE

MeSH Terms: Proteins*/chemistry , Computational Biology*/methods , Databases, Protein* , Software*, Protein Conformation ; Models, Molecular ; User-Computer Interface ; Internet

pySBeLT: A Python software package for stochastic sediment transport under rarefied conditions

Authors: Sarah Zwiep Shawn M. Chartrand

Source: Journal of Open Source Software. 7:4282

Subject Terms: 0103 physical sciences, 01 natural sciences, 0105 earth and related environmental sciences