Výsledky vyhledávání - Phylogeny Computer algorithms. Algorithms.

SEPIA: simulation-based evaluation of prioritization algorithms

Autoři: Almaraz, Kimberly Jang, Tyler Lewis, McKenna a další

Zdroj: BMC Medical Informatics and Decision Making. 21(1)

Témata: Public Health, Health Sciences, HIV/AIDS, Algorithms, Animals, Computer Simulation, HIV Infections, Humans, Phylogeny, Sepia, SEPIA, HIV, Prioritization, Metrics, Simulation-based evaluation, FAVITES, Phylogenetic, Information Systems, Clinical Sciences, Medical Informatics, Health services and systems

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/8bz0700s
https://escholarship.org/content/qt8bz0700s/qt8bz0700s.pdf

Analysis of Phylogeny Tracking Algorithms for Serial and Multiprocess Applications

Autoři: Moreno, Matthew Andres Papa, Santiago Rodriguez Dolson, Emily

Témata: Computer Science - Data Structures and Algorithms, Quantitative Biology - Populations and Evolution, text

URL: http://arxiv.org/abs/2403.00246

Efficient Bayesian inference under the multispecies coalescent with migration

Autoři: Flouri, Tomáš Jiao, Xiyun Huang, Jun a další

Zdroj: Proceedings of the National Academy of Sciences of the United States of America. 120(44)

Témata: Mathematical Sciences, Biological Sciences, Statistics, Genetics, Human Genome, Biotechnology, Bioengineering, 1.4 Methodologies and measurements, 2.5 Research design and methodologies (aetiology), Generic health relevance, Animals, Phylogeny, Computer Simulation, Bayes Theorem, Likelihood Functions, Algorithms, Gene Flow, Models, Genetic, BPP, gene flow, genomics, migration, multispecies coalescent

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/18g3j08m
https://escholarship.org/content/qt18g3j08m/qt18g3j08m.pdf

phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets

Autoři: De Maio, Nicola Boulton, William Weilguny, Lukas a další

Zdroj: PLOS Computational Biology. 18(4)

Témata: Biological Sciences, Bioinformatics and Computational Biology, Evolutionary Biology, Genetics, Information and Computing Sciences, Applied Computing, Networking and Information Technology R&D (NITRD), Human Genome, 1.4 Methodologies and measurements, Underpinning research, Generic health relevance, Algorithms, COVID-19, Computer Simulation, Evolution, Molecular, Humans, Pandemics, Phylogeny, SARS-CoV-2, Software, Mathematical Sciences, Bioinformatics

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/7z00p7t7
https://escholarship.org/content/qt7z00p7t7/qt7z00p7t7.pdf

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

Autoři: Letunic, Ivica Bork, Peer

Zdroj: Nucleic Acids Research. 44(W1)

Témata: 31 Biological Sciences (for-2020), Algorithms (mesh), Animals (mesh), Archaea (mesh), Bacteria (mesh), Biological Evolution (mesh), Computer Graphics (mesh), Datasets as Topic (mesh), Eukaryota (mesh), Humans (mesh), Information Storage and Retrieval (mesh), Internet (mesh), Phylogeny (mesh), User-Computer Interface (mesh), Akkermansia muciniphila, cobalamin, cobamide remodeling, corrinoids, vitamin B12, Humans (mesh), Vitamin B 12 (mesh), Cobamides (mesh), Bacterial Proteins (mesh), Chromatography, High Pressure Liquid (mesh), Molecular Structure (mesh), Amino Acid Sequence (mesh), Hydrolysis (mesh), Akkermansia (mesh), Akkermansia muciniphila, cobalamin, cobamide remodeling, corrinoids, vitamin B12, Akkermansia (mesh), Amino Acid Sequence (mesh), Bacterial Proteins (mesh), Chromatography, High Pressure Liquid (mesh), Cobamides (mesh), Humans (mesh), Hydrolysis (mesh), Molecular Structure (mesh), Vitamin B 12 (mesh), 05 Environmental Sciences (for), 06 Biological Sciences (for), 08 Information and Computing Sciences (for), Developmental Biology (science-metrix), 31 Biological sciences (for-2020), 34 Chemical sciences (for-2020), 41 Environmental sciences (for-2020)

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/4xt299dv
https://escholarship.org/content/qt4xt299dv/qt4xt299dv.pdf

Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT.

Autoři: Sarmashghi, Shahab Balaban, Metin Rachtman, Eleonora a další

Zdroj: PLoS Computational Biology. 17(11)

Témata: Algorithms, Animals, Computational Biology, Computer Simulation, Databases, Genetic, Genome, Genomics, Humans, Invertebrates, Least-Squares Analysis, Linear Models, Mammals, Models, Genetic, Phylogeny, Plants, Repetitive Sequences, Nucleic Acid, Software, Vertebrates

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/8rk0n6hg
https://escholarship.org/content/qt8rk0n6hg/qt8rk0n6hg.pdf

Phylogeny-based classification of microbial communities

Autoři: Tanaseichuk, Olga Borneman, James Jiang, Tao

Zdroj: Bioinformatics. 30(4)

Témata: Genetics, Networking and Information Technology R&D (NITRD), Algorithms, Bacteria, Computational Biology, Computer Simulation, High-Throughput Nucleotide Sequencing, Metagenomics, Microbiota, Phylogeny, RNA, Ribosomal, 16S, Mathematical Sciences, Biological Sciences, Information and Computing Sciences, Bioinformatics

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/1tg3w086
https://escholarship.org/content/qt1tg3w086/qt1tg3w086.pdf

Gain-loss-duplication models on a phylogeny: exact algorithms for computing the likelihood and its gradient

Autoři: Csuros, Miklos

Témata: Quantitative Biology - Populations and Evolution, Computer Science - Data Structures and Algorithms, G.3, G.2.1, J.3, text

URL: http://arxiv.org/abs/2107.11440

VaiPhy: a Variational Inference Based Algorithm for Phylogeny

Autoři: Koptagel, Hazal Kviman, Oskar Melin, Harald a další

Témata: Quantitative Biology - Populations and Evolution, Computer Science - Machine Learning, Quantitative Biology - Quantitative Methods, text

URL: http://arxiv.org/abs/2203.01121

Algorithms in Bioinformatics : 9th International Workshop, WABI 2009, Philadelphia, USA, September 12-13, 2009. Proceedings

Autoři: Steven L. Salzberg Tandy Warnow

Resource Type: eBook.

Témata: Bioinformatics--Mathematics--Congresses, Computer algorithms--Congresses, Computational biology--Congresses, Algorithms--Congresses

Categories: SCIENCE / Life Sciences / Biochemistry, COMPUTERS / Computer Science, COMPUTERS / Data Science / Data Analytics, COMPUTERS / Programming / General, COMPUTERS / Programming / Algorithms, MATHEMATICS / Probability & Statistics / General, SCIENCE / Life Sciences / Biology, SCIENCE / Research & Methodology

Calculating Higher-Order Moments of Phylogenetic Stochastic Mapping Summaries in Linear Time

Autoři: Dhar, Amrit Minin, Vladimir N

Zdroj: Journal of Computational Biology. 24(5)

Témata: Applied Mathematics, Biological Sciences, Mathematical Sciences, Algorithms, Computational Biology, Computer Simulation, Evolution, Molecular, Markov Chains, Models, Genetic, Phylogeny, dynamic programming, evolutionary conservation, posterior predictive diagnostics, stat.CO, stat.ME, Information and Computing Sciences, Bioinformatics, Biological sciences, Information and computing sciences, Mathematical sciences

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/726274hh
https://escholarship.org/content/qt726274hh/qt726274hh.pdf

A Population Phylogenetic View of Mitochondrial Heteroplasmy.

Autoři: Wilton, Peter R Zaidi, Arslan Makova, Kateryna a další

Zdroj: Genetics. 208(3)

Témata: Mitochondria, Bayes Theorem, Genetics, Population, Phylogeny, Algorithms, Models, Genetic, Computer Simulation, cell lineage, development, phylogeny, somatic evolution, Biotechnology, Genetics, 1.1 Normal biological development and functioning, Underpinning research, Generic health relevance, Developmental Biology

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/7sq4q2tc
https://escholarship.org/content/qt7sq4q2tc/qt7sq4q2tc.pdf

Efficient Bayesian Species Tree Inference under the Multispecies Coalescent

Autoři: Rannala, Bruce Yang, Ziheng

Zdroj: Systematic Biology. 66(5)

Témata: Bioengineering, 2.5 Research design and methodologies (aetiology), Aetiology, Algorithms, Animals, Bayes Theorem, Classification, Computer Simulation, Crotalus, Models, Biological, Phylogeny, Shrews, Bayes factor, Bayesian inference, MCMC, multispecies coalescent, nodeslider, species tree, SPR, Evolutionary Biology, Genetics

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/9nh9763h
https://escholarship.org/content/qt9nh9763h/qt9nh9763h.pdf

FluShuffle and FluResort: new algorithms to identify reassorted strains of the influenza virus by mass spectrometry

Autoři: Kevin M. Downard Jason W. H. Wong Aaron T. L. Lun

Zdroj: BMC Bioinformatics
BMC Bioinformatics, Vol 13, Iss 1, p 208 (2012)

Témata: 0301 basic medicine, QH301-705.5, Computer applications to medicine. Medical informatics, R858-859.7, Biochemistry, Mass Spectrometry, Viral Proteins, 03 medical and health sciences, Orthomyxoviridae Infections, Reassortment, Sequence Analysis, Protein, Influenza, Human, Animals, Humans, Biology (General), Molecular Biology, Pandemics, Phylogeny, Computer algorithm, 0303 health sciences, Mass spectrometry, Orthomyxoviridae, Computer Science Applications, 3. Good health, Phylogenetics, Proteotyping, Influenza Vaccines, Influenza virus, Sequence Alignment, Algorithms, Reassortant Viruses, Software

Přístupová URL adresa: https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-208
https://pubmed.ncbi.nlm.nih.gov/22906155
https://doaj.org/article/75bc4800be504150a31c1e91570a8330
https://www.ncbi.nlm.nih.gov/pubmed/22906155
https://dblp.uni-trier.de/db/journals/bmcbi/bmcbi13.html#LunWD12
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-208
https://link.springer.com/article/10.1186/1471-2105-13-208/fulltext.html
http://hub.hku.hk/handle/10722/251000
http://hub.hku.hk/bitstream/10722/251000/1/Content.pdf
http://hdl.handle.net/10722/251000

Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach.

Autoři: Jiang, Yueyu McDonald, Daniel Perry, Daniela a další

Zdroj: Computer applications in the biosciences : CABIOS. 40(6)

Témata: Phylogeny, Algorithms, RNA, Ribosomal, 16S, Software, Computational Biology, Machine Learning, Sequence Analysis, DNA

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/7mv169jp
https://escholarship.org/content/qt7mv169jp/qt7mv169jp.pdf

Combining 16S rRNA gene variable regions enables high-resolution microbial community profiling

Autoři: Fuks, Garold Elgart, Michael Amir, Amnon a další

Zdroj: Microbiome. 6(1)

Témata: Human Genome, Bioengineering, Biotechnology, Genetics, Underpinning research, 1.1 Normal biological development and functioning, Generic health relevance, Algorithms, Animals, Bacteria, Computer Simulation, DNA Probes, DNA, Bacterial, Drosophila melanogaster, Microbiota, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S, Sequence Analysis, DNA, Microbial profiling, Microbiome, 16S rRNA gene, High resolution, Ecology, Microbiology, Medical Microbiology

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/1d3777fd
https://escholarship.org/content/qt1d3777fd/qt1d3777fd.pdf

Characters, Computers, and Cladograms: A Review of the Berkeley Cladistics Workshop

Autoři: Donoghue, Michael J. McGinley, Ronald J.

Zdroj: Systematic Botany, 1981 Oct 01. 6(4), 359-372.

Přístupová URL adresa: https://www.jstor.org/stable/2418448

Algorithmic Foundations for Social Advancement

Autoři: Shin-ichi Minato Takeaki Uno Norihito Yasuda a další

Resource Type: eBook.

Témata: Algorithms, Automatic differentiation

Categories: COMPUTERS / Computer Science, COMPUTERS / Programming / Algorithms

Distance-aware Algorithms for Scalable Evolutionary and Ecological Analyses

Autoři: Balaban, Metin

Témata: Bioinformatics, Computer science, Systematic biology

Popis souboru: application/pdf

Přístupová URL adresa: https://escholarship.org/uc/item/1t44t744
https://escholarship.org/content/qt1t44t744/qt1t44t744.pdf

Combinatorial Algorithms

Autoři: Charles J. Colbourn Roberto Grossi Nadia Pisanti

Resource Type: eBook.

Témata: Computer science—Mathematics, Discrete mathematics, Algorithms, Artificial intelligence—Data processing, Computer arithmetic and logic units, Computer graphics

Categories: COMPUTERS / Computer Science, COMPUTERS / Artificial Intelligence / General, COMPUTERS / Software Development & Engineering / Computer Graphics, COMPUTERS / Database Administration & Management, COMPUTERS / Logic Design, COMPUTERS / Programming / Algorithms, MATHEMATICS / Discrete Mathematics