Search Results - Modified algorithm for Proven and Young

A novel genomic prediction method combining randomized Haseman-Elston regression with a modified algorithm for Proven and Young for large genomic data

Authors: Hailan Liu Guo-Bo Chen

Source: Crop Journal, Vol 10, Iss 2, Pp 550-554 (2022)

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Genomic prediction, Agriculture (General), GBLUP, Agriculture, Randomized HE-regression, Modified algorithm for Proven and Young, S1-972

Access URL: https://doaj.org/article/8d38b11a9a90440c932b0a2d0dcb3687
https://www.sciencedirect.com/science/article/pii/S2214514121001872

A novel genomic prediction method combining randomized HasemanElston regression with a modified algorithm for Proven and Young for large genomic data.

Authors: Hailan Liu Guo-Bo Chen

Source: Crop Journal (2095-5421); Apr2022, Vol. 10 Issue 2, p550-554, 5p

Subject Terms: HERITABILITY, ARABIDOPSIS thaliana, PLANT genomes, ALGORITHMS, GENOMICS

Is single-step genomic REML with the algorithm for proven and young more computationally efficient when less generations of data are present?

Authors: Junqueira, Vinícius Silva Lourenco, Daniela Masuda, Yutaka et al.

Source: Journal of Animal Science. May2022, Vol. 100 Issue 5, p1-11. 11p.

Subjects: Chromosome inversions, Algorithms, Eigenvalues, Sparse matrices, Phenotypes

Core-dependent changes in genomic predictions using the Algorithm for Proven and Young in single-step genomic best linear unbiased prediction.

Authors: Misztal, Ignacy Tsuruta, Shogo Pocrnic, Ivan et al.

Source: Journal of Animal Science. Dec2020, Vol. 98 Issue 12, p1-8. 8p.

Subjects: Forecasting, Algorithms, Beef cattle, Dairy cattle, Gaussian distribution

Marker effect p-values for single-step GWAS with the algorithm for proven and young in large genotyped populations.

Authors: Leite, Natália Galoro Bermann, Matias Tsuruta, Shogo et al.

Source: Genetics Selection Evolution; 8/22/2024, Vol. 56 Issue 1, p1-12, 12p

Subject Terms: SINGLE nucleotide polymorphisms, GENOME-wide association studies, SPARSE approximations, MATRIX inversion, APPROXIMATION error

Use of genomic recursions and algorithm for proven and young animals for single-step genomic BLUP analyses - a simulation study.

Authors: Fragomeni, B.O. Lourenco, D.A.L. Tsuruta, S. et al.

Source: Journal of Animal Breeding & Genetics. Oct2015, Vol. 132 Issue 5, p340-345. 6p.

Subjects: Cattle breeding, Genomic imprinting, Dairy cattle genetics, Animal genetic engineering, Simulation methods & models, Genotypes

Algorithm for Mining Maximal Balanced Bicliques Using Formal Concept Analysis

Authors: Ilkhomjon Sadriddinov Sony Peng Sophort Siet et al.

Source: IEEE Access, Vol 13, Pp 35113-35123 (2025)

Subject Terms: Bipartite graph, formal concept analysis, maximal balanced biclique, Electrical engineering. Electronics. Nuclear engineering, TK1-9971

File Description: electronic resource

Relation: https://ieeexplore.ieee.org/document/10574232/; https://doaj.org/toc/2169-3536

Access URL: https://doaj.org/article/fc952bef2f674c0882a0eebe60e8f910

Selection of core animals in the Algorithm for Proven and Young using a simulation model.

Authors: Bradford, H.L. Pocrnić, I. Fragomeni, B.O. et al.

Source: Journal of Animal Breeding & Genetics. Dec2017, Vol. 134 Issue 6, p545-552. 8p.

Subjects: Artificial selection of animals, Simulation methods & models, Genotypes, Livestock breeding, Eigenvalues

On the equivalence between marker effect models and breeding value models and direct genomic values with the Algorithm for Proven and Young.

Authors: Bermann, Matias Lourenco, Daniela Forneris, Natalia S. et al.

Source: Genetics Selection Evolution; 7/16/2022, Vol. 54 Issue 1, p1-10, 10p

Subject Terms: ARTIFICIAL selection of animals, ALGORITHMS, ANIMAL breeds, GENOTYPES

Fast Reflected Forward-Backward algorithm: achieving fast convergence rates for convex optimization with linear cone constraints.

Authors: Boţ, Radu Ioan Nguyen, Dang-Khoa Zong, Chunxiang

Source: Journal of Scientific Computing; Dec2025, Vol. 105 Issue 3, p1-46, 46p

East Africa Point of Care Viral Load Study (EAPoC-VL)

Authors: Karolinska Institutet Kilimanjaro Christian Medical Centre, Tanzania Amsterdam Institute for Global Health and Development et al.

Source: Implementation of Point of Care HIV Viral Load Monitoring to Improve Viral Load Suppression Among Children, Adolescents and Young People Living With HIV in East Africa
Joint United Nations Programme on, H.A. and H.I.V.A. Joint United Nations Programme on, 90-90-90: an ambitious treatment target to help end the AIDS epidemic. Geneva: UNAIDS
UNAIDS UNAIDS data 2020. Annual Report, 2020.
Joint United Nations Programme on, H.A., Fast-track: ending the AIDS epidemic by 2030. Geneva: UNAIDS.
Fretzayas A, Karpathios T, Dimitriou P, Nicolaidou P, Matsaniotis N. Grading of vesicoureteral reflux by radionuclide cystography. Pediatr Radiol. 1984;14(3):148-50. doi: 10.1007/BF01002299.
Agolory S, de Klerk M, Baughman AL, Sawadogo S, Mutenda N, Pentikainen N, Shoopala N, Wolkon A, Taffa N, Mutandi G, Jonas A, Mengistu AT, Dzinotyiweyi E, Prybylski D, Hamunime N, Medley A. Low Case Finding Among Men and Poor Viral Load Suppression Among Adolescents Are Impeding Namibia's Ability to Achieve UNAIDS 90-90-90 Targets. Open Forum Infect Dis. 2018 Aug 11;5(9):ofy200. doi: 10.1093/ofid/ofy200. eCollection 2018 Sep.
Gill MM, Hoffman HJ, Bobrow EA, Mugwaneza P, Ndatimana D, Ndayisaba GF, Baribwira C, Guay L, Asiimwe A. Detectable Viral Load in Late Pregnancy among Women in the Rwanda Option B+ PMTCT Program: Enrollment Results from the Kabeho Study. PLoS One. 2016 Dec 22;11(12):e0168671. doi: 10.1371/journal.pone.0168671. eCollection 2016.
Ntlantsana V, Hift RJ, Mphatswe WP. HIV viraemia during pregnancy in women receiving preconception antiretroviral therapy in KwaDukuza, KwaZulu-Natal. South Afr J HIV Med. 2019 Apr 10;20(1):847. doi: 10.4102/sajhivmed.v20i1.847. eCollection 2019.
Bulage L, Ssewanyana I, Nankabirwa V, Nsubuga F, Kihembo C, Pande G, Ario AR, Matovu JK, Wanyenze RK, Kiyaga C. Factors Associated with Virological Non-suppression among HIV-Positive Patients on Antiretroviral Therapy in Uganda, August 2014-July 2015. BMC Infect Dis. 2017 May 3;17(1):326. doi: 10.1186/s12879-017-2428-3.
Nabukeera S, Kagaayi J, Makumbi FE, Mugerwa H, Matovu JKB. Factors associated with virological non-suppression among HIV-positive children receiving antiretroviral therapy at the Joint Clinical Research Centre in Lubowa, Kampala Uganda. PLoS One. 2021 Jan 27;16(1):e0246140. doi: 10.1371/journal.pone.0246140. eCollection 2021.
RBC, Rwanda Population-based HIV Impact Assessment, R.B. Centre, Editor. 2020, RPHIA 2018-2019.
UNAIDS, Understanding fast†track: Accelerating action to end the AIDS epidemic by 2030. 2015, UNAIDS Geneva.
Mwau M, Syeunda CA, Adhiambo M, Bwana P, Kithinji L, Mwende J, Oyiengo L, Sirengo M, Boeke CE. Scale-up of Kenya's national HIV viral load program: Findings and lessons learned. PLoS One. 2018 Jan 11;13(1):e0190659. doi: 10.1371/journal.pone.0190659. eCollection 2018.
El-Sadr WM, Rabkin M, Nkengasong J, Birx DL. Realizing the potential of routine viral load testing in sub-Saharan Africa. J Int AIDS Soc. 2017 Nov;20 Suppl 7(Suppl 7):e25010. doi: 10.1002/jia2.25010. No abstract available.
Mangone E, C.C., Johns B, Mudhune V, & Avila C, Economic Evaluation of Nationally Scaled Point-of-Care Diagnostic Platforms for Viral Load Monitoring in Kenya, U. Report, Editor. 2018.
Zhang J, Lan T, Lu Y. Translating in vitro diagnostics from centralized laboratories to point-of-care locations using commercially-available handheld meters. Trends Analyt Chem. 2020 Mar;124:115782. doi: 10.1016/j.trac.2019.115782. Epub 2019 Dec 23.
Boeke CE, Joseph J, Atem C, Banda C, Coulibaly KD, Doi N, Gunda A, Kandulu J, Kiernan B, Kingwara L, Maokola W, Maparo T, Mbaye RN, Mtumbuka E, Mziray J, Ngugi C, Nkakulu J, Nzuobontane D, Okomo Assoumo MC, Peter T, Rioja MR, Sacks JA, Simbi R, Vojnov L, Khan SA. Evaluation of near point-of-care viral load implementation in public health facilities across seven countries in sub-Saharan Africa. J Int AIDS Soc. 2021 Jan;24(1):e25663. doi: 10.1002/jia2.25663.
Moyo S, Mohammed T, Wirth KE, Prague M, Bennett K, Holme MP, Mupfumi L, Sebogodi P, Moraka NO, Boleo C, Maphorisa CN, Seraise B, Gaseitsiwe S, Musonda RM, van Widenfelt E, Powis KM, Gaolathe T, Tchetgen Tchetgen EJ, Makhema JM, Essex M, Lockman S, Novitsky V. Point-of-Care Cepheid Xpert HIV-1 Viral Load Test in Rural African Communities Is Feasible and Reliable. J Clin Microbiol. 2016 Dec;54(12):3050-3055. doi: 10.1128/JCM.01594-16. Epub 2016 Oct 12.
Bwana P, Ageng'o J, Danda J, Mbugua J, Handa A, Mwau M. Performance and usability of mPIMA HIV 1/2 viral load test in point of care settings in Kenya. J Clin Virol. 2019 Dec;121:104202. doi: 10.1016/j.jcv.2019.104202. Epub 2019 Oct 23.
Drain PK, Dorward J, Violette LR, Quame-Amaglo J, Thomas KK, Samsunder N, Ngobese H, Mlisana K, Moodley P, Donnell D, Barnabas RV, Naidoo K, Abdool Karim SS, Celum C, Garrett N. Point-of-care HIV viral load testing combined with task shifting to improve treatment outcomes (STREAM): findings from an open-label, non-inferiority, randomised controlled trial. Lancet HIV. 2020 Apr;7(4):e229-e237. doi: 10.1016/S2352-3018(19)30402-3. Epub 2020 Feb 24.
Nicholas S, Poulet E, Wolters L, Wapling J, Rakesh A, Amoros I, Szumilin E, Gueguen M, Schramm B. Point-of-care viral load monitoring: outcomes from a decentralized HIV programme in Malawi. J Int AIDS Soc. 2019 Aug;22(8):e25387. doi: 10.1002/jia2.25387.
Villa G, Abdullahi A, Owusu D, Smith C, Azumah M, Sayeed L, Austin H, Awuah D, Beloukas A, Chadwick D, Phillips R, Geretti AM. Determining virological suppression and resuppression by point-of-care viral load testing in a HIV care setting in sub-Saharan Africa. EClinicalMedicine. 2020 Jan 5;18:100231. doi: 10.1016/j.eclinm.2019.12.001. eCollection 2020 Jan.
Bowen DJ, Kreuter M, Spring B, Cofta-Woerpel L, Linnan L, Weiner D, Bakken S, Kaplan CP, Squiers L, Fabrizio C, Fernandez M. How we design feasibility studies. Am J Prev Med. 2009 May;36(5):452-7. doi: 10.1016/j.amepre.2009.02.002.
Fleuren MA, Paulussen TG, Van Dommelen P, Van Buuren S. Towards a measurement instrument for determinants of innovations. Int J Qual Health Care. 2014 Oct;26(5):501-10. doi: 10.1093/intqhc/mzu060. Epub 2014 Jun 20.
Sekhon M, Cartwright M, Francis JJ. Acceptability of health care interventions: A theoretical framework and proposed research agenda. Br J Health Psychol. 2018 Sep;23(3):519-531. doi: 10.1111/bjhp.12295. Epub 2018 Feb 16. No abstract available.
Baral S, Logie CH, Grosso A, Wirtz AL, Beyrer C. Modified social ecological model: a tool to guide the assessment of the risks and risk contexts of HIV epidemics. BMC Public Health. 2013 May 17;13:482. doi: 10.1186/1471-2458-13-482.
Fazeli PL, Turan JM, Budhwani H, Smith W, Raper JL, Mugavero MJ, Turan B. Moment-to-moment within-person associations between acts of discrimination and internalized stigma in people living with HIV: An experience sampling study. Stigma Health. 2017 Aug;2(3):216-228. doi: 10.1037/sah0000051. Epub 2016 Aug 8.
WHO, Child and Adolescent Health and Development, in Progress Report, W.H. Organization, Editor. 2006.
Decety J. Empathy in Medicine: What It Is, and How Much We Really Need It. Am J Med. 2020 May;133(5):561-566. doi: 10.1016/j.amjmed.2019.12.012. Epub 2020 Jan 15.
Mariani D, de Azevedo MCVM, Vasconcellos I, Ribeiro L, Alves C, Ferreira OC Jr, Tanuri A. The performance of a new point-of-care HIV virus load technology to identify patients failing antiretroviral treatment. J Clin Virol. 2020 Jan;122:104212. doi: 10.1016/j.jcv.2019.104212. Epub 2019 Nov 9.
Meggi B, Bollinger T, Zitha A, Mudenyanga C, Vubil A, Mutsaka D, Nhachigule C, Mabunda N, Loquiha O, Kroidl A, Jani IV. Performance of a True Point-of-Care Assay for HIV-1/2 Viral Load Measurement at Antenatal and Postpartum Services. J Acquir Immune Defic Syndr. 2021 May 1;87(1):693-699. doi: 10.1097/QAI.0000000000002621.
Vasconcellos I, Mariani D, Azevedo MCVM, Ferreira OC Jr, Tanuri A. Development and validation of a simple and rapid way to generate low volume of plasma to be used in point-of-care HIV virus load technologies. Braz J Infect Dis. 2020 Jan-Feb;24(1):30-33. doi: 10.1016/j.bjid.2019.10.010. Epub 2019 Nov 21.
Gavina K, Franco LC, Khan H, Lavik JP, Relich RF. Molecular point-of-care devices for the diagnosis of infectious diseases in resource-limited settings - A review of the current landscape, technical challenges, and clinical impact. J Clin Virol. 2023 Dec;169:105613. doi: 10.1016/j.jcv.2023.105613. Epub 2023 Oct 18.

Efficient large-scale genomic prediction in approximate genome-based kernel model.

Authors: Liu H Xu J Wang X et al.

Source: TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [Theor Appl Genet] 2024 Dec 12; Vol. 138 (1), pp. 6. Date of Electronic Publication: 2024 Dec 12.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: Germany NLM ID: 0145600 Publication Model: Electronic Cited Medium: Internet ISSN: 1432-2242 (Electronic) Linking ISSN: 00405752 NLM ISO Abbreviation: Theor Appl Genet Subsets: MEDLINE

MeSH Terms: Algorithms* , Models, Genetic* , Genomics*/methods, Computer Simulation ; Genome, Plant

Dimensionality of genomic information and performance of the Algorithm for Proven and Young for different livestock species.

Authors: Pocrnic, Ivan Lourenco, Daniela A. L. Masuda, Yutaka et al.

Source: Genetics Selection Evolution; 10/31/2016, Vol. 48, p1-9, 9p

Subject Terms: GENOMICS, RECURSION theory, EIGENVALUES, SINGLE nucleotide polymorphisms, GENOTYPES

Theoretical accuracy for indirect predictions based on SNP effects from single-step GBLUP.

Authors: Garcia, Andre Aguilar, Ignacio Legarra, Andres et al.

Source: Genetics Selection Evolution; 9/27/2022, Vol. 54 Issue 1, p1-11, 11p

Subject Terms: SINGLE nucleotide polymorphisms, PHENOTYPES, ANIMAL models in research, GENES, ALGORITHMS

A modified algorithm of linear matching method for limit analysis.

Authors: Ri, Jun-Hyok Hong, Hyon-Sik

Source: Archive of Applied Mechanics. Aug2017, Vol. 87 Issue 8, p1399-1410. 12p.

Subject Terms: *NUMERICAL analysis, *PLASTIC analysis (Engineering), *FINITE element method, *ITERATIVE methods (Mathematics), *STOCHASTIC convergence

An Efficient and Accurate Penalty-projection Eddy Viscosity Algorithm for Stochastic Magnetohydrodynamic Flow Problems.

Authors: Mohebujjaman, Muhammad Miranda, Julian Mahbub, Md. Abdullah Al et al.

Source: Journal of Scientific Computing; Oct2024, Vol. 101 Issue 1, p1-40, 40p

An aggregate and iterative disaggregate algorithm with proven optimality in machine learning.

Authors: Park, Young Klabjan, Diego

Source: Machine Learning; Nov2016, Vol. 105 Issue 2, p199-232, 34p

Subject Terms: MACHINE learning, MACHINE theory, REGRESSION analysis, STOCHASTIC convergence, AGGREGATED data

Optimisation of the core subset for the APY approximation of genomic relationships.

Authors: Pocrnic, Ivan Lindgren, Finn Tolhurst, Daniel et al.

Source: Genetics Selection Evolution; 11/22/2022, Vol. 54 Issue 1, p1-17, 17p

Subject Terms: SINGLE nucleotide polymorphisms, DATA structures, PRINCIPAL components analysis, NONLINEAR analysis, COMPUTATIONAL complexity

An effective adaptive trust region algorithm for nonsmooth minimization.

Authors: Sheng, Zhou Yuan, Gonglin

Source: Computational Optimization & Applications; Sep2018, Vol. 71 Issue 1, p251-271, 21p

Subject Terms: NONSMOOTH optimization, MATHEMATICAL regularization, MATHEMATICAL functions, STOCHASTIC convergence, PROBLEM solving

Young-onset movement disorders:Genetic advances require a new clinical approach

Authors: van Egmond, Martje Elisabeth, van Egmond, Martje Elisabeth

Source: van Egmond , M E 2018 , ' Young-onset movement disorders : Genetic advances require a new clinical approach ' , Doctor of Philosophy , University of Groningen , [Groningen] .

Index Terms: doctoralThesis

URL: http://hdl.handle.net/11370/59a4979a-320e-41a3-b967-04f5291653e7