Search Results - Microarray Data Analysis and Gene Expression Profiling~

Identification of Autophagy-Related Genes Involved in Intervertebral Disc Degeneration by Microarray Data Analysis

Authors: Miao Ma Guifu Ma Chao Zhang et al.

Source: World Neurosurgery. 188:e1-e17

Subject Terms: MicroRNAs, Nucleus Pulposus, Gene Expression Profiling, Autophagy, Humans, Gene Regulatory Networks, Intervertebral Disc Degeneration, Protein Interaction Maps, Microarray Analysis

Access URL: https://pubmed.ncbi.nlm.nih.gov/38782255

PLPCA: Persistent Laplacian-Enhanced PCA for Microarray Data Analysis.

Authors: Cottrell S Wang R Wei GW

Source: Journal of chemical information and modeling [J Chem Inf Model] 2024 Apr 08; Vol. 64 (7), pp. 2405-2420. Date of Electronic Publication: 2023 Sep 22.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE

MeSH Terms: Algorithms* , Gene Expression Profiling*/methods, Principal Component Analysis ; Data Analysis

Exploring the pathogenesis of extranodal natural killer/T cell lymphoma complicated With EBV via microarray data analysis.

Authors: Peng YY Tang XQ Wang X

Source: Leukemia research [Leuk Res] 2025 Sep; Vol. 156, pp. 107909. Date of Electronic Publication: 2025 Jun 27.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: England NLM ID: 7706787 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-5835 (Electronic) Linking ISSN: 01452126 NLM ISO Abbreviation: Leuk Res Subsets: MEDLINE

MeSH Terms: Lymphoma, Extranodal NK-T-Cell*/genetics , Lymphoma, Extranodal NK-T-Cell*/virology , Lymphoma, Extranodal NK-T-Cell*/pathology , Epstein-Barr Virus Infections*/complications , Epstein-Barr Virus Infections*/genetics , Epstein-Barr Virus Infections*/virology , Epstein-Barr Virus Infections*/pathology , Herpesvirus 4, Human* , Biomarkers, Tumor*/genetics, Humans ; Protein Interaction Maps ; Gene Expression Profiling ; Gene Regulatory Networks ; Gene Expression Regulation, Neoplastic ; Computational Biology/methods ; Databases, Genetic

Identification of Culprit Genes for Different Diseases by Analyzing Microarray Data.

Authors: Banerjee AK Ghosh S Mal C

Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2024; Vol. 2719, pp. 167-180.

Publication Type: Journal Article

Journal Info: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

MeSH Terms: Software* , Gene Expression Profiling*/methods, Oligonucleotide Array Sequence Analysis/methods ; Programming Languages ; Gene Library

Drug Discovery in Canine Pyometra Disease Identified by Text Mining and Microarray Data Analysis.

Authors: Wang X Yu G

Source: BioMed research international [Biomed Res Int] 2023 Apr 17; Vol. 2023, pp. 7839568. Date of Electronic Publication: 2023 Apr 17 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 101600173 Publication Model: eCollection Cited Medium: Internet ISSN: 2314-6141 (Electronic) NLM ISO Abbreviation: Biomed Res Int Subsets: MEDLINE

MeSH Terms: Gene Expression Profiling*/methods , Pyometra*, Humans ; Female ; Animals ; Dogs ; Microarray Analysis ; Gene Regulatory Networks ; Protein Interaction Maps/genetics ; Data Mining ; Computational Biology/methods ; Gene Ontology

Improving prediction of blood cancer using leukemia microarray gene data and Chi2 features with weighted convolutional neural network

Authors: Ebtisam Alabdulqader Aisha Ahmed Alarfaj Muhammad Umer et al.

Source: Sci Rep
Scientific Reports, Vol 14, Iss 1, Pp 1-15 (2024)

Subject Terms: FOS: Computer and information sciences, Artificial intelligence, Deep Learning in Medical Image Analysis, Bioinformatics, Science, Convolutional neural network, 02 engineering and technology, Gene, Article, Feature Extraction, Machine Learning, Computational biology, Automated Analysis of Blood Cell Images, Artificial Intelligence, Biochemistry, Genetics and Molecular Biology, Microarray Data Analysis and Gene Expression Profiling, Microscopic Blood Images, 0202 electrical engineering, electronic engineering, information engineering, Genetics, Humans, Blood cancer, Feature Selection, Molecular Biology, Internal medicine, Biology, Oligonucleotide Array Sequence Analysis, Cancer, Leukemia, Gene Expression Profiling, 4. Education, Life Sciences, Computer science, 3. Good health, Oncology, Hematologic Neoplasms, FOS: Biological sciences, Computer Science, Physical Sciences, Cancer Prognosis, Medical Image Analysis, Medicine, Neural Networks, Computer, Supervised Machine Learning, Computer Vision and Pattern Recognition, Gene expression, Algorithms, Microarray analysis techniques

Access URL: https://pubmed.ncbi.nlm.nih.gov/38972881
https://doaj.org/article/3bf758559f78447789ca1984afb1114f

Transcriptional analysis reveals a markedly reduced expression of the voltage-dependent calcium channel α2δ1 subunit in canine prostate cancer compared to benign prostatic hyperplasia.

Authors: Zacharski, Maciej Ugorski, Maciej Prządka, Przemysław et al.

Source: BMC Veterinary Research. 10/9/2025, Vol. 21 Issue 1, p1-12. 12p.

Subjects: Benign prostatic hyperplasia, Prostate cancer, Calcium channels, Gene expression, Genetic regulation, RNA sequencing, Biomarkers

Analysis of Proposed and Traditional Boosting Algorithm with Standalone Classification Methods for Classifying Gene Expresssion Microarray Data Using a Reject Option

Authors: Adil Aslam Mir Lal Hussain Muhammad Waseem et al.

Source: Applied Artificial Intelligence, Vol 36, Iss 1 (2022)

Subject Terms: Data Analysis, Artificial neural network, 0301 basic medicine, Artificial intelligence, Support vector machine, Linear discriminant analysis, Gene Expression, Challenges and Innovations in Bioinformatics Education, Boosting (machine learning), Bayesian probability, Bayes' theorem, 03 medical and health sciences, Biochemistry, Genetics and Molecular Biology, Support Vector Machines, Microarray Data Analysis and Gene Expression Profiling, Machine learning, Decision tree, Feature Selection, Molecular Biology, Data mining, Probabilistic logic, Perceptron, 0303 health sciences, Prediction of Protein Subcellular Localization, Naive Bayes classifier, Life Sciences, QA75.5-76.95, Computer science, 3. Good health, Electronic computers. Computer science, Q300-390, Cybernetics, Probabilistic classification

Access URL: https://doaj.org/article/36ef1196f98d4a878d8766e04abedbd0

Identification of PPARG as key gene to link coronary atherosclerosis disease and rheumatoid arthritis via microarray data analysis.

Authors: Zhang Z Chen Y Fu X et al.

Source: PloS one [PLoS One] 2024 Apr 04; Vol. 19 (4), pp. e0300022. Date of Electronic Publication: 2024 Apr 04 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Arthritis, Rheumatoid*/genetics , Atherosclerosis*/genetics , Coronary Artery Disease*/genetics, Humans ; Computational Biology ; Data Analysis ; Gene Expression Profiling ; Gene Regulatory Networks ; Inflammation ; PPAR gamma/genetics

Microarray data analysis on gene and miRNA expression to identify biomarkers in non-small cell lung cancer

Authors: Xiang Jin Zhen Zhang Yinghui Guan et al.

Source: BMC Cancer
BMC Cancer, Vol 20, Iss 1, Pp 1-10 (2020)

Subject Terms: 0301 basic medicine, 0303 health sciences, Lung Neoplasms, Gene Expression Profiling, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, Computational Biology, Regulatory network, Prognosis, 3. Good health, MicroRNAs, 03 medical and health sciences, Non-small cell lung cancer, Microarray data analysis, Carcinoma, Non-Small-Cell Lung, Differentially expressed genes, Biomarkers, Tumor, Humans, Gene Regulatory Networks, Protein Interaction Maps, RC254-282, miRNA, Research Article, Signal Transduction

Access URL: https://bmccancer.biomedcentral.com/track/pdf/10.1186/s12885-020-06829-x.pdf
https://pubmed.ncbi.nlm.nih.gov/32299382
https://doaj.org/article/18a59b85eec44c33a473c826afa09421
https://europepmc.org/article/MED/32299382
https://link.springer.com/content/pdf/10.1186/s12885-020-06829-x.pdf
https://link.springer.com/article/10.1186/s12885-020-06829-x
https://bmccancer.biomedcentral.com/articles/10.1186/s12885-020-06829-x
https://pubmed.ncbi.nlm.nih.gov/32299382/
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7164187/

GSEnet: feature extraction of gene expression data and its application to Leukemia classification

Authors: Kun Yu Mingxu Huang Shuaizheng Chen et al.

Source: Mathematical Biosciences and Engineering, Vol 19, Iss 5, Pp 4881-4891 (2022)

Subject Terms: Cancer Research, Artificial intelligence, MicroRNA Regulation in Cancer and Development, Robustness (evolution), Gene Expression, 02 engineering and technology, Pattern recognition (psychology), Gene, Feature Extraction, senet, Automated Analysis of Blood Cell Images, Biochemistry, Genetics and Molecular Biology, Microarray Data Analysis and Gene Expression Profiling, Machine learning, QA1-939, Genetics, 0202 electrical engineering, electronic engineering, information engineering, Humans, Feature Selection, Molecular Biology, Leukemia Classification, Data mining, Biology, resnet, Leukemia, feature extraction, 4. Education, deep learning, Life Sciences, Computer science, 3. Good health, FOS: Biological sciences, Computer Science, Physical Sciences, Feature selection, gene expression, Feature extraction, Neural Networks, Computer, Computer Vision and Pattern Recognition, TP248.13-248.65, Mathematics, Biotechnology

Access URL: https://pubmed.ncbi.nlm.nih.gov/35430845
https://doaj.org/article/1f7f8024f6a04ae1ac39f98ec5eb5285

Microarray data analysis reveals gene expression changes in response to ionizing radiation in MCF7 human breast cancer cells.

Authors: Bai J Luo Y Zhang S

Source: Hereditas [Hereditas] 2020 Sep 03; Vol. 157 (1), pp. 37. Date of Electronic Publication: 2020 Sep 03.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 0374654 Publication Model: Electronic Cited Medium: Internet ISSN: 1601-5223 (Electronic) Linking ISSN: 00180661 NLM ISO Abbreviation: Hereditas Subsets: MEDLINE

MeSH Terms: Gene Expression Profiling* , Radiation, Ionizing* , Transcriptome*, Gene Expression Regulation, Neoplastic/*radiation effects, Computational Biology/methods ; Gene Expression Regulation ; Gene Ontology ; Gene Regulatory Networks ; Humans ; MCF-7 Cells

Gene Expression Microarray Data Analysis for Toxicology Profiling

Authors: Roland Somogyi Jeffrey J. Seilhamer Shoudan Liang et al.

Source: Annals of the New York Academy of Sciences. 919:52-67

Subject Terms: Male, 0301 basic medicine, 0303 health sciences, Drug-Related Side Effects and Adverse Reactions, Entropy, Gene Expression Profiling, Gene Expression, Organ Size, Rats, Rats, Sprague-Dawley, 03 medical and health sciences, Liver, Toxicity Tests, Benzo(a)pyrene, Animals, Clofibrate, RNA, Messenger, Acetaminophen, Oligonucleotide Array Sequence Analysis

Access URL: https://pubmed.ncbi.nlm.nih.gov/11083097
https://nyaspubs.onlinelibrary.wiley.com/doi/full/10.1111/j.1749-6632.2000.tb06867.x
https://www.ncbi.nlm.nih.gov/pubmed/11083097
https://mdanderson.elsevierpure.com/en/publications/gene-expression-microarray-data-analysis-for-toxicology-profiling
http://ui.adsabs.harvard.edu/abs/2000NYASA.919...52C/abstract
http://europepmc.org/abstract/MED/11083097

Exploring the Pathogenesis of Psoriasis Complicated With Atherosclerosis via Microarray Data Analysis.

Authors: Su W Zhao Y Wei Y et al.

Source: Frontiers in immunology [Front Immunol] 2021 May 27; Vol. 12, pp. 667690. Date of Electronic Publication: 2021 May 27 (Print Publication: 2021).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

MeSH Terms: Gene Expression Profiling* , Oligonucleotide Array Sequence Analysis* , Transcriptome*, Atherosclerosis/*genetics , Psoriasis/*genetics, Atherosclerosis/diagnosis ; Atherosclerosis/immunology ; Databases, Genetic ; Gene Expression Regulation ; Gene Regulatory Networks ; Humans ; Protein Interaction Maps ; Psoriasis/complications ; Psoriasis/diagnosis ; Psoriasis/immunology ; Signal Transduction

Exploring the pathogenesis of chronic atrophic gastritis with atherosclerosis via microarray data analysis.

Authors: Men X Shi X Xu Q et al.

Source: Medicine [Medicine (Baltimore)] 2024 Apr 19; Vol. 103 (16), pp. e37798.

Publication Type: Journal Article

Journal Info: Publisher: Lippincott Williams & Wilkins Country of Publication: United States NLM ID: 2985248R Publication Model: Print Cited Medium: Internet ISSN: 1536-5964 (Electronic) Linking ISSN: 00257974 NLM ISO Abbreviation: Medicine (Baltimore) Subsets: MEDLINE

MeSH Terms: Gastritis, Atrophic*/genetics , Atherosclerosis*/genetics, Humans ; Cell Movement ; Computational Biology ; Data Analysis ; Gene Expression Profiling

Concordance between ER, PR, Ki67, and HER2‐low expression in breast cancer by MammaTyper RT‐qPCR and immunohistochemistry: implications for the practising pathologist

Authors: Nahla Badr Mohamed Zaakouk Qi Zhang et al.

Source: Histopathology. 85:437-450

Subject Terms: Adult, 0301 basic medicine, Cancer Research, Receptor, ErbB-2, Biopsy, Breast Neoplasms, Real-Time Polymerase Chain Reaction, Chromosome, Gene, Biochemistry, Real-time polymerase chain reaction, Pathology and Forensic Medicine, 03 medical and health sciences, Breast cancer, 0302 clinical medicine, Biochemistry, Genetics and Molecular Biology, Microarray Data Analysis and Gene Expression Profiling, Health Sciences, Concordance, Biomarkers, Tumor, Pathology, Humans, Molecular Biology, Biology, Internal medicine, In Situ Hybridization, Fluorescence, Cancer, Fluorescence in situ hybridization, Life Sciences, Linguistics, Middle Aged, Immunohistochemistry, FOS: Philosophy, ethics and religion, 3. Good health, Philosophy, Ki-67 Antigen, Receptors, Estrogen, Oncology, Breast Pathology and Imaging Techniques, FOS: Languages and literature, Medicine, Female, Hormone Receptors, Biopsy, Large-Core Needle, Receptors, Progesterone, Kappa, Molecular Research on Breast Cancer

Access URL: https://pubmed.ncbi.nlm.nih.gov/38651302

Digging for Significant Genes in Microarray Expression Data Based on Systematic Sampling and Hierarchal Clustering Algorithm.

Authors: Mohammed NN; University of Sulaimani, Collage of Science, Computer Department, Sulaymaniyah, Iraq. nawing1@gmail.com.

Source: Advances in experimental medicine and biology [Adv Exp Med Biol] 2021; Vol. 1338, pp. 1-6.

Publication Type: Journal Article

Journal Info: Publisher: Kluwer Academic/Plenum Publishers Country of Publication: United States NLM ID: 0121103 Publication Model: Print Cited Medium: Print ISSN: 0065-2598 (Print) Linking ISSN: 00652598 NLM ISO Abbreviation: Adv Exp Med Biol Subsets: MEDLINE

MeSH Terms: Algorithms* , Gene Expression Profiling*, Cluster Analysis ; Humans ; Oligonucleotide Array Sequence Analysis

Gene expression profile analysis to discover molecular signatures for early diagnosis and therapies of triple-negative breast cancer

Authors: Md Shahin Alam Adiba Sultana Guanghui Wang et al.

Source: Front Mol Biosci
Frontiers in Molecular Biosciences, Vol 9 (2022)

Subject Terms: Pulmonary and Respiratory Medicine, FOS: Computer and information sciences, 0301 basic medicine, Mechanisms and Implications of Ferroptosis in Cancer, diagnosis, QH301-705.5, Bioinformatics, therapies, False discovery rate, Gene Expression, Gene Set Enrichment Analysis, Cancer research, Microarray, Gene, Computational biology, 03 medical and health sciences, Breast cancer, Triple-negative breast cancer, Biochemistry, Genetics and Molecular Biology, Microarray Data Analysis and Gene Expression Profiling, Health Sciences, Tumor Microenvironment, Genetics, Molecular Biosciences, Biology (General), Molecular Biology, Biology, Cancer, 0303 health sciences, microarray gene expression profiles, Life Sciences, key genes (KGs), Gene expression profiling, Analysis of Gene Interaction Networks, 3. Good health, integrated bioinformatics and system biology approaches, Oncology, FOS: Biological sciences, KEGG, triple-negative breast cancer, Medicine, Gene ontology, Gene expression, Microarray analysis techniques

Access URL: https://pubmed.ncbi.nlm.nih.gov/36567949
https://doaj.org/article/6430a735647c43ca9a8050bdd5e2c7f4

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data

Authors: Patricio Yankilevich Javier Herrero Pablo Minguez et al.

Contributors: Patricio Yankilevich Javier Herrero Pablo Minguez et al.

Source: Nucleic Acids Res
Biblos-e Archivo. Repositorio Institucional de la UAM
Universidad Autónoma de Madrid
instname

Subject Terms: 0301 basic medicine, Internet, 0303 health sciences, Medicina, Gene Expression Profiling, Gene Expression, GEPAS, Article, Systems Integration, User-Computer Interface, 03 medical and health sciences, Microarray data analysis, Experiments, Analysis, Algorithms, Software, Oligonucleotide Array Sequence Analysis

File Description: application/pdf

Access URL: https://academic.oup.com/nar/article-pdf/33/suppl_2/W616/7623801/gki500.pdf
https://pubmed.ncbi.nlm.nih.gov/15980548
http://hdl.handle.net/10486/678305
https://hdl.handle.net/10486/678305
https://doi.org/10.1093/nar/gki500

Identification of Biomolecular Information in Rotenone-Induced Cellular Model of Parkinson's Disease by Public Microarray Data Analysis

Authors: Li-Hua Chen Zhong-Sen Le Bo Yu et al.

Source: Journal of Computational Biology. 27:888-903

Subject Terms: 0301 basic medicine, MicroRNAs, 03 medical and health sciences, Gene Expression Regulation, Gene Expression Profiling, Rotenone, Cluster Analysis, Humans, Gene Regulatory Networks, Parkinson Disease, Protein Interaction Maps, Microarray Analysis, Transcription Factors

Access URL: https://www.liebertpub.com/doi/pdf/10.1089/cmb.2019.0151
https://pubmed.ncbi.nlm.nih.gov/31593492