Search Results - JavaScript mass spectrometry parsing

JS-MS: a cross-platform, modular javascript viewer for mass spectrometry signals

Authors: Jebediah Rosen Kyle Handy André Gillan et al.

Source: BMC Bioinformatics, Vol 18, Iss 1, Pp 1-7 (2017)

Subject Terms: Mass spectrometry visualization, Mass spectrometry JavaScript, 3-D visualization, Mass spectrometry data processing, JavaScript mass spectrometry parsing, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12859-017-1883-6; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/ee09e0e217614374a4ec3145eda64657

JS-MS: a cross-platform, modular javascript viewer for mass spectrometry signals.

Authors: Rosen, Jebediah Handy, Kyle Gillan, André et al.

Source: BMC Bioinformatics; 11/6/2017, Vol. 18, p1-7, 7p, 3 Diagrams, 3 Graphs

Subject Terms: ALGORITHMS, JAVASCRIPT programming language, MASS spectrometry, CHROMATOGRAPHIC analysis, SPECTRUM analysis

StackZDPD: a novel encoding scheme for mass spectrometry data optimized for speed and compression ratio.

Authors: Wang, Jinyin Lu, Miaoshan Wang, Ruiming et al.

Source: Scientific Reports; 3/30/2022, Vol. 12 Issue 1, p1-9, 9p

Subject Terms: MASS spectrometry, THIRD-party software, SPEED, ENCODING, PARSING (Computer grammar), ACQUISITION of data, IMAGE compression

ChemSpectra: a web-based spectra editor for analytical data.

Authors: Huang, Yu-Chieh Tremouilhac, Pierre Nguyen, An et al.

Source: Journal of Cheminformatics; 2/10/2021, Vol. 13 Issue 1, p1-9, 9p

Subject Terms: MASS spectrometry, INFRARED spectroscopy, NUCLEAR magnetic resonance, JAVASCRIPT programming language, COUPLING constants, RECORDS management, NUCLEAR magnetic resonance spectroscopy, SPECTRUM allocation

Aird: a computation-oriented mass spectrometry data format enables a higher compression ratio and less decoding time.

Authors: Lu, Miaoshan An, Shaowei Wang, Ruimin et al.

Source: BMC Bioinformatics; 1/12/2022, Vol. 23 Issue 1, p1-12, 12p

Subject Terms: MASS spectrometry, DATA compression, METADATA, DATA warehousing

Open and reusable annotated mass spectrometry dataset of a chemodiverse collection of 1,600 plant extracts.

Authors: Allard, Pierre-Marie Gaudry, Arnaud Quirós-Guerrero, Luis-Manuel et al.

Source: GigaScience; 2023, Vol. 12 Issue 1, p1-9, 9p

Subject Terms: PLANT extracts, COLLECTION & preservation of plant specimens, MASS spectrometry, NATURAL products, BIOCOMPLEXITY, LIQUID chromatography-mass spectrometry

A Current Encyclopedia of Bioinformatics Tools, Data Formats and Resources for Mass Spectrometry Lipidomics.

Authors: Hoffmann, Nils Mayer, Gerhard Has, Canan et al.

Source: Metabolites (2218-1989); Jul2022, Vol. 12 Issue 7, pN.PAG-N.PAG, 27p

Subject Terms: MASS spectrometry, LIQUID chromatography-mass spectrometry, LIPIDOMICS, ION mobility spectroscopy, BIOINFORMATICS software, ION mobility, BIOINFORMATICS, ELECTRONIC encyclopedias

GlycoDraw: a python implementation for generating high-quality glycan figures.

Authors: Lundstrøm, Jon Urban, James Thomès, Luc et al.

Source: Glycobiology; Nov2023, Vol. 33 Issue 11, p927-934, 8p

Subject Terms: GLYCANS, FLEXIBLE display systems, PYTHONS, MASS spectrometry, MANNEQUINS (Figures), GLYCOMICS

Circadian ontogenetic metabolomics atlas: an interactive resource with insights from rat plasma, tissues, and feces.

Authors: Rudl Kulhava, Lucie Houdek, Pavel Novakova, Michaela et al.

Source: Cellular & Molecular Life Sciences; 6/28/2025, Vol. 82 Issue 1, p1-18, 18p

Subject Terms: DEVELOPMENTAL biology, SUPRACHIASMATIC nucleus, CIRCADIAN rhythms, METABOLIC regulation, LIPIDOMICS, CLOCK genes, MOLECULAR clock

New software tools, databases, and resources in metabolomics: updates from 2020.

Authors: Misra, Biswapriya B.

Source: Metabolomics; May2021, Vol. 17 Issue 5, p1-24, 24p

Subject Terms: SOFTWARE development tools, METABOLOMICS, DATABASES, SPACE exploration

EPIC-DB: a proteomics database for studying Apicomplexan organisms.

Authors: Madrid-Aliste, Carlos J. Dybas, Joseph M. Angeletti, Ruth Hogue et al.

Source: BMC Genomics; 2009, Vol. 10, Special section p1-7, 7p, 4 Color Photographs

Subject Terms: PROTEOMICS, GENOMES, PROTEINS, DATABASES, MASS spectrometry

The ToF-ACSM: a portable aerosol chemical speciation monitor with TOFMS detection.

Authors: Fröhlich, R. Cubison, M. J. Slowik, J. G. et al.

Source: Atmospheric Measurement Techniques; 2013, Vol. 6 Issue 11, p3225-3241, 17p

Subject Terms: ATMOSPHERIC aerosols, TIME-of-flight mass spectrometers, CHEMICAL speciation, MASS spectrometry, MASS spectrometers, BIODEGRADATION of hydrocarbons

Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration.

Authors: McGowan, Thomas Johnson, James E Kumar, Praveen et al.

Source: GigaScience; Apr2020, Vol. 9 Issue 4, pN.PAG-N.PAG, 1p

Subject Terms: DATA modeling, VISUALIZATION, AMINO acid sequence, MASS spectrometry, SOFTWARE development tools, APPLICATION program interfaces, XBRL (Document markup language)

The MetabolomeExpress Project: enablingweb-based processing, analysis and transparentdissemination of GC/MS metabolomics datasets.

Authors: Carroll, Adam J. Badger, Murray R. Millar, A. Harvey

Source: BMC Bioinformatics; 2010, Vol. 11, p376-388, 13p

Subject Terms: MASS spectrometry, META-analysis, COMPUTERS in statistics, REGRESSION analysis, ELECTRONIC data processing, BIOTECHNOLOGY

A metabolomics pipeline for the mechanistic interrogation of the gut microbiome.

Authors: Han, Shuo Van Treuren, Will Fischer, Curt R. et al.

Source: Nature; 7/15/2021, Vol. 595 Issue 7867, p415-420, 6p

The metaRbolomics Toolbox in Bioconductor and beyond.

Authors: Stanstrup, Jan Broeckling, Corey D. Helmus, Rick et al.

Source: Metabolites (2218-1989); Oct2019, Vol. 9 Issue 10, p200, 1p

Subject Terms: MASS spectrometry, WORKFLOW management systems, NUCLEAR magnetic resonance spectroscopy, BIOLOGICAL systems

A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository.

Authors: Smelter, Andrey Moseley, Hunter N. B.

Source: Metabolomics; May2018, Vol. 14 Issue 5, p1-1, 1p

Subject Terms: METABOLOMICS, MASS spectrometry, NUCLEAR magnetic resonance, METADATA, PYTHON programming language

Connecting a SIMS laboratory to the Sparrow data system

Authors: Linzmeier, Benjamin Quinn, Daven Idzikowski, Casey et al.

Data standards can boost metabolomics research, and if there is a will, there is a way.

Authors: Rocca-Serra, Philippe Salek, Reza M. Arita, Masanori et al.

Source: Metabolomics; Jan2016, Vol. 12 Issue 1, pN.PAG-N.PAG, 1p

Subject Terms: METABOLOMICS, REPRODUCIBLE research, NUCLEAR magnetic resonance, SCIENTIFIC community

Company/Entity: NATIONAL Institutes of Health (U.S.)

Understanding the treatment of acute pancreatitis and its complications -a database for assessing traditional Chinese medicine use.

Authors: Zhou, Xin Yang, Yu Liu, Ya-Li et al.

Source: Frontiers in Pharmacology; 2025, p1-16, 16p

Subject Terms: CASCADING style sheets, CHINESE medicine, INTEGRATIVE medicine, HERBAL medicine, DATABASES, INTERNET servers