Search Results - Computing methodologies → Parallel computing methodologies

Fast parallel hypertree decompositions in logarithmic recursion depth

Authors: Gottlob, Georg Lanzinger, Matthias Okulmus, Cem et al.

Source: ACM Transactions on Database Systems. 49(1)

Subject Terms: CCS Concepts, Information systems, Relational database query languages, Mathematics of computing, Hypergraphs, Computing methodologies, Parallel algorithms

File Description: electronic

Access URL: https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-223094
https://doi.org/10.1145/3638758

Methodologies for Synthesizing and Analyzing Dynamic Dataflow Programs in Heterogeneous Systems for Edge Computing

Authors: Aurelien Bloch Simone Casale-Brunet Marco Mattavelli

Source: IEEE Open Journal of Circuits and Systems, Vol 2, Pp 769-781 (2021)

Subject Terms: Edge computing, dynamic dataflow programs, RVC-CAL, parallel computing, SIMD, source-to-source compiler, Electric apparatus and materials. Electric circuits. Electric networks, TK452-454.4

File Description: electronic resource

Relation: https://ieeexplore.ieee.org/document/9645043/; https://doaj.org/toc/2644-1225

Access URL: https://doaj.org/article/cd363e4784d04a0dba4a2beb4d60e45c

Exploring genomic datasets through machine learning methods leveraging high-performance computing

Authors: Gómez Sánchez, Gonzalo

Contributors: University/Department: Universitat Politècnica de Catalunya. Departament d'Arquitectura de Computadors

Thesis Advisors: Berral García, Josep Lluís, Carrera Pérez, David

Source: TDX (Tesis Doctorals en Xarxa)

Subject Terms: Àrees temàtiques de la UPC::Informàtica

File Description: application/pdf

Access URL: http://hdl.handle.net/10803/693566
https://dx.doi.org/10.5821/dissertation-2117-424249

AliSim-HPC: parallel sequence simulator for phylogenetics.

Authors: Ly-Trong N Barca GMJ Minh BQ

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2023 Sep 02; Vol. 39 (9).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

MeSH Terms: Software* , Computing Methodologies*, Phylogeny ; Computer Simulation ; Sequence Alignment

A parallel methodology of adaptive Cartesian grid for compressible flow simulations

Authors: Xinyu Qi Yuchen Yang Linlin Tian et al.

Source: Advances in Aerodynamics, Vol 4, Iss 1, Pp 1-30 (2022)

Subject Terms: Cartesian grids, AMR, Parallel computing, Compressible flow, Immersed boundary method, Engineering (General). Civil engineering (General), TA1-2040, Motor vehicles. Aeronautics. Astronautics, TL1-4050

File Description: electronic resource

Relation: https://doaj.org/toc/2524-6992

Access URL: https://doaj.org/article/61b63f2b55104970aa78939241e571ac

APPLICATION OF GPU-CUDA PARALLEL COMPUTING TO THE SMITH-WATERMAN ALGORITHM TO DETECT MUSIC PLAGIARISM

Authors: Alfredo Gormantara Ferdianto Tangdililing Sean Coonery Sumarta

Source: Barekeng, Vol 19, Iss 3, Pp 1725-1736 (2025)

Subject Terms: gpu-cuda, music plagiarism, parallel computing, smith-waterman, Probabilities. Mathematical statistics, QA273-280

File Description: electronic resource

Relation: https://ojs3.unpatti.ac.id/index.php/barekeng/article/view/17294; https://doaj.org/toc/1978-7227; https://doaj.org/toc/2615-3017

Access URL: https://doaj.org/article/db0037226ba94552839ef4bea58122a2

Fast Nonlinear Least Squares Optimization of Large-Scale Semi-Sparse Problems

Authors: Fratarcangeli, Marco Bradley, Derek Gruber, Aurel et al.

Source: Computer Graphics Forum. 39(2):247-259

Subject Terms: Massively parallel and high-performance simulations, Computing methodologies, Animation

File Description: electronic

Access URL: https://research.chalmers.se/publication/517363
https://research.chalmers.se/publication/518036
https://research.chalmers.se/publication/518036/file/518036_Fulltext.pdf

Massively Parallel Implementation of Sequence Alignment with Basic Local Alignment Search Tool Using Parallel Computing in Java Library.

Authors: Nowicki M Bzhalava D BaŁa P

Source: Journal of computational biology : a journal of computational molecular cell biology [J Comput Biol] 2018 Aug; Vol. 25 (8), pp. 871-881. Date of Electronic Publication: 2018 Jul 13.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 9433358 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-8666 (Electronic) Linking ISSN: 10665277 NLM ISO Abbreviation: J Comput Biol Subsets: MEDLINE

MeSH Terms: Computing Methodologies* , Software*, Computational Biology/*methods , Sequence Alignment/*methods, Humans ; Programming Languages

New TNT routines for parallel computing with MPI.

Authors: Morales ME Goloboff PA

Source: Molecular phylogenetics and evolution [Mol Phylogenet Evol] 2023 Jan; Vol. 178, pp. 107643. Date of Electronic Publication: 2022 Oct 08.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Academic Press Country of Publication: United States NLM ID: 9304400 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9513 (Electronic) Linking ISSN: 10557903 NLM ISO Abbreviation: Mol Phylogenet Evol Subsets: MEDLINE

MeSH Terms: Software* , Algorithms*, Phylogeny ; Computing Methodologies

Development of parallel computing algorithms for special mathematical functions in fractional calculus: Implementation with GPU and CUDA

Authors: Chaitanya S. Jage Vishwesh A. Vyawahare Mukesh D. Patil

Source: Results in Engineering, Vol 28, Iss , Pp 107931- (2025)

Subject Terms: Fractional calculus, Special mathematical functions, Parallel computing, CUDA, GPU, Speed-up, Technology

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2590123025039829; https://doaj.org/toc/2590-1230

Access URL: https://doaj.org/article/84281639bb0b44ba9659a7bbdeb5a08f

Multi-threaded SIMD strategies and frequency scaling for sustainable evolutionary biology.

Authors: Santander-Jiménez, Sergio Vega-Rodríguez, Miguel A.

Source: Cluster Computing; Dec2025, Vol. 28 Issue 16, p1-25, 25p

Subject Terms: ENERGY consumption, PHYLOGENETIC models, SIMD (Computer architecture), POWER aware computing, MULTICORE processors, PARALLEL programming

A Methodology for Parallel Implementation of the Basic Operations of Digital Signal Processing.

Authors: Klimova, O. V.

Source: AIP Conference Proceedings; 2019, Vol. 2176 Issue 1, p030007-1-030007-4, 4p, 1 Diagram

Subject Terms: ADAPTIVE computing systems, PARALLEL programming, DIGITAL signal processing, PARALLEL processing

QUARTIC: QUick pArallel algoRithms for high-Throughput sequencIng data proCessing.

Authors: Jarlier F Joly N Fedy N et al.

Source: F1000Research [F1000Res] 2020 Apr 06; Vol. 9, pp. 240. Date of Electronic Publication: 2020 Apr 06 (Print Publication: 2020).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: F1000 Research Ltd Country of Publication: England NLM ID: 101594320 Publication Model: eCollection Cited Medium: Internet ISSN: 2046-1402 (Electronic) Linking ISSN: 20461402 NLM ISO Abbreviation: F1000Res Subsets: MEDLINE

MeSH Terms: Algorithms* , Computing Methodologies* , High-Throughput Nucleotide Sequencing* , Software*, Genomics ; Reproducibility of Results

Multilevel Methodology in Parallel Computing Environment for Evaluating BWR Safety Parameters

Contributors: Ivanov, Kostadin [Pennsylvania State University (United States)]

Source: Nuclear Technology; 146; 3; Other Information: Copyright (c) 2006 American Nuclear Society (ANS), United States, All rights reserved. http://epubs.ans.org/; Country of input: International Atomic Energy Agency (IAEA)

File Description: Medium: X; Size: page(s) 267-278

Access URL: http://www.osti.gov/scitech/biblio/20837858

Quantum computing in dentistry.

Authors: Sudharson NA Roy N Daniel AY et al.

Source: British dental journal [Br Dent J] 2023 Jul; Vol. 235 (2), pp. 79. Date of Electronic Publication: 2023 Jul 28.

Publication Type: Letter

Journal Info: Publisher: British Dental Journal Country of Publication: England NLM ID: 7513219 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-5373 (Electronic) Linking ISSN: 00070610 NLM ISO Abbreviation: Br Dent J Subsets: MEDLINE

MeSH Terms: Computing Methodologies* , Quantum Theory*, Dentistry

Accelerating Bioinformatics Applications via Emerging Parallel Computing Systems.

Authors: Gomez-Pulido JA Schmidt B Feng WC

Source: IEEE/ACM transactions on computational biology and bioinformatics [IEEE/ACM Trans Comput Biol Bioinform] 2015 Sep-Oct; Vol. 12 (5), pp. 971-2.

Publication Type: Editorial; Introductory Journal Article

Journal Info: Publisher: IEEE Computer Society Country of Publication: United States NLM ID: 101196755 Publication Model: Print Cited Medium: Internet ISSN: 1557-9964 (Electronic) Linking ISSN: 15455963 NLM ISO Abbreviation: IEEE/ACM Trans Comput Biol Bioinform Subsets: MEDLINE

MeSH Terms: Computing Methodologies* , Signal Processing, Computer-Assisted*, Computational Biology/*methods , Computational Biology/*trends , Genomics/*methods , Genomics/*trends, Computational Biology/instrumentation ; Forecasting ; Genomics/instrumentation

[Series: Medical Applications of the PHITS Code (2): Acceleration by Parallel Computing].

Authors: Furuta T Sato T

Source: Igaku butsuri : Nihon Igaku Butsuri Gakkai kikanshi = Japanese journal of medical physics : an official journal of Japan Society of Medical Physics [Igaku Butsuri] 2015; Vol. 35 (3), pp. 264-8.

Publication Type: English Abstract; Journal Article; Review

Journal Info: Publisher: Nihon Igaku Butsuri Gakkai Country of Publication: Japan NLM ID: 101125977 Publication Model: Print Cited Medium: Print ISSN: 1345-5354 (Print) Linking ISSN: 13455354 NLM ISO Abbreviation: Igaku Butsuri Subsets: MEDLINE

MeSH Terms: Computer Simulation* , Computing Methodologies* , Health Physics*, Computer Systems ; Computers ; Monte Carlo Method ; Software ; User-Computer Interface

BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

Authors: Ayres, Daniel L Darling, Aaron Zwickl, Derrick J et al.

Source: Systematic Biology. 61(1)

Subject Terms: Biological Sciences, Ecology, Evolutionary Biology, Genetics, Bioengineering, Networking and Information Technology R&D (NITRD), Algorithms, Computational Biology, Computing Methodologies, Evolution, Molecular, Genome, Phylogeny, Software, Bayesian phylogenetics, GPU, maximum likelihood, parallel computing, Evolutionary biology

File Description: application/pdf

Access URL: https://escholarship.org/uc/item/74r4s085
https://escholarship.org/content/qt74r4s085/qt74r4s085.pdf

A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer.

Authors: Peng S Cui Y Yang S et al.

Source: IEEE/ACM transactions on computational biology and bioinformatics [IEEE/ACM Trans Comput Biol Bioinform] 2019 Mar-Apr; Vol. 16 (2), pp. 425-433. Date of Electronic Publication: 2017 Jun 16.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: IEEE Computer Society Country of Publication: United States NLM ID: 101196755 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-9964 (Electronic) Linking ISSN: 15455963 NLM ISO Abbreviation: IEEE/ACM Trans Comput Biol Bioinform Subsets: MEDLINE

MeSH Terms: Computing Methodologies* , Molecular Dynamics Simulation* , Software*

DPP-PMRF: Rethinking Optimization for a Probabilistic Graphical Model Using Data-Parallel Primitives

Authors: Lessley, Brenton Perciano, Talita Heinemann, Colleen et al.

Source: 2018 IEEE 8TH SYMPOSIUM ON LARGE DATA ANALYSIS AND VISUALIZATION (LDAV). 00

Subject Terms: 46 Information and Computing Sciences (for-2020), 4603 Computer Vision and Multimedia Computation (for-2020), Bioengineering (rcdc), Mathematics of computing-Graph algorithms, Markov networks, Expectation maximization, Computing methodologies-Image processing, Shared memory, cs.DC, cs.DC, graph algorithms, markov networks, image processing, parallel computing

File Description: application/pdf

Access URL: https://escholarship.org/uc/item/75b346h2
https://escholarship.org/content/qt75b346h2/qt75b346h2.pdf