Suchergebnisse - "structural variations"

Pan-genome and haplotype map of cassava cultivars and wild ancestors provide insights into its adaptive evolution and domestication

Autoren: Zhiqiang Xia Zhenglin Du Xincheng Zhou et al.

Quelle: Xia, Z, Du, Z, Zhou, X, Jiang, S, Zhu, T, Wang, L, Chen, F, Carvalho, L, Zou, M, Becerra Lopez-Lavalle, L A, Zhang, X, Xu, L, Wang, Z, Chen, M, Guo, X, Wang, S, Li, M, Li, Y, Wang, H, Liu, S, Bao, Y, Zhao, L, Zhang, C, Xiao, J, Guo, F, Shen, X, Li, H, Lu, C, Qiao, F, Ceballos, H, Yan, H, Qin, X, Ma, L, Zhang, H, He, S, Zhao, W, Wan, Y, Chen, Y, Huang, D, Li, K, Liu, B, Peng, M, Zhang, W, Møller, B L, Chen, X, Luo, M C, Xiao, J & Wang, W 2025, ' Pan-genome and haplotype map of cassava cultivars and wild ancestors provide insights into its adaptive evolution and domestication ', Molecular Plant, vol. 18, no. 6, pp. 1047-1071 . https://doi.org/10.1016/j.molp.2025.05.014

Schlagwörter: evolution and domestication, pan-genome, selective sweeping, structural variations, genome, cassava

Dateibeschreibung: application/pdf

Zugangs-URL: https://curis.ku.dk/ws/files/457079753/1-s2.0-S167420522500173X-main.pdf

Gossypium latifolium genome reveals the genetic basis of domestication of upland cotton from semi-wild races to cultivars

Autoren: Chao Fu Nian Wang Qingying Meng et al.

Quelle: Crop Journal, Vol 13, Iss 3, Pp 929-941 (2025)

Schlagwörter: Domestication, Genome assembly, Agriculture (General), Comparative genome analysis, Agriculture, G. latifolium, Structural variations, S1-972

Zugangs-URL: https://doaj.org/article/fbefbcc532ab4dc5bfb5431b68ebb4fb

Identification of candidate genes related to hybrid sterility by genomic structural variation and transcriptome analyses in cattle-yak

Autoren: Rui-Dong Wan Xue Gao Guo-Wen Wang et al.

Quelle: Journal of Dairy Science, Vol 108, Iss 1, Pp 679-693 (2025)

Schlagwörter: Male, Gene Expression Profiling, cattle-yak, structural variations, SF250.5-275, hybrid sterility, Dairying, SF221-250, transcriptomes, Testis, meiosis, Animals, Hybridization, Genetic, Cattle, Spermatogenesis, Transcriptome, Infertility, Male, Dairy processing. Dairy products

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39414017
https://doaj.org/article/85d34ebfcca943fab16fab85780aef84

Whole-genome sequencing reveals complex structural variations at a major locus linked to pigmented spot sizes in Tianfu goats

Autoren: Jiazhong Guo Qingsi Huang Qiunan Xiang et al.

Quelle: BMC Genomics, Vol 26, Iss 1, Pp 1-10 (2025)

Schlagwörter: Tianfu goats, Pigmented spot sizes, Genome-wide association study, EDNRA, Complex structural variations, Biotechnology, TP248.13-248.65, Genetics, QH426-470

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1471-2164

Zugangs-URL: https://doaj.org/article/6a9a187753404a03a543871b4c7b44bc

Structural variations in oil crops: Types, and roles on domestication and breeding

Autoren: Xiaobo Cui Miao Yao Meili Xie et al.

Quelle: Oil Crop Science, Vol 9, Iss 4, Pp 240-246 (2024)

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Presence or absence variations, Genetics, Copy number variations, Homologous exchanges, QH426-470, Structural variations, Oil crops

Zugangs-URL: https://doaj.org/article/8d73586c1b5a4a76a69bdb5878a527f1

Gut microbiota drives structural variation of exogenous probiotics to enhance colonization

Autoren: Shuaiming Jiang Shi Huang Zeng Zhang et al.

Quelle: Gut Microbes, Vol 17, Iss 1 (2025)

Schlagwörter: Gut-adapted strains, probiotic bacteria, Lactiplantibacillus plantarum HNU082, divergent evolution, structural variations, colonization, Diseases of the digestive system. Gastroenterology, RC799-869

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Zugangs-URL: https://doaj.org/article/3bacb5adbf8f4f4e837bd1f1bc0f4259

Heat stress-induced genomic instability in neural stem cells and its association with neuronal developmental deficits

Autoren: Zeze Wang Zhen Luo Yulong Tan et al.

Quelle: Brain Research Bulletin, Vol 230, Iss , Pp 111517- (2025)

Schlagwörter: Heat exposure, Neural stem cells, Genomic instability, Genetic structural variations, Neurodevelopmental disorders, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

Dateibeschreibung: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0361923025003296; https://doaj.org/toc/1873-2747

Zugangs-URL: https://doaj.org/article/43d673c5c0814bb7ba90dcc434141091

Graph-based pan-genome analysis reveals diversity of structural variations in native and commercial chicken

Autoren: Yiming WANG Zijia NI Yinhua HUANG

Quelle: Frontiers of Agricultural Science and Engineering, Vol 12, Iss 2, Pp 355-366 (2025)

Schlagwörter: Graph-based pan-genome, chicken, next-generation sequencing, structural variations, Agriculture (General), S1-972

Dateibeschreibung: electronic resource

Relation: https://journal.hep.com.cn/fase/EN/PDF/10.15302/J-FASE-2024591; https://doaj.org/toc/2095-7505

Zugangs-URL: https://doaj.org/article/1a85286cf84c4deea17d568b0c73a46e

cuteFC: regenotyping structural variants through an accurate and efficient force-calling method

Autoren: Tao Jiang Shuqi Cao Yadong Liu et al.

Quelle: Genome Biology, Vol 26, Iss 1, Pp 1-25 (2025)

Schlagwörter: Structural variations, Long-read sequencing, Force calling, Large-scale population studies, Biology (General), QH301-705.5, Genetics, QH426-470

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1474-760X

Zugangs-URL: https://doaj.org/article/a47e6c8d15ee450a971564dca731f1e6

Breed wheat pangenome graph provides access to gene diversity, structural variations and key agronomic loci architecture

Autoren: Ouandaogo, Djémilatou Pailler, Vincent Rimbert, Hélène et al.

Weitere Verfasser: Ouandaogo, Djémilatou Pailler, Vincent Rimbert, Hélène et al.

Schlagwörter: [SDV] Life Sciences [q-bio], Triticum aestivum, comparative genomics, structural variations, pangenome graph

Zugangs-URL: https://hal.inrae.fr/hal-05194720v1

Exploring wheat diversity with low-pass long-read sequencing

Autoren: Rimbert, Hélène Pailler, Vincent Belmonte, Elodie et al.

Weitere Verfasser: Rimbert, Hélène Pailler, Vincent Belmonte, Elodie et al.

Schlagwörter: [SDV] Life Sciences [q-bio], INDELs, SNP DISCOVERY, Wheat, Triticum aestivum, [SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], Polymorphism, Long-read sequencing, Structural variations, Low-pass, Pacbio

Zugangs-URL: https://hal.science/hal-05122908v1

Analysis of complex chromosomal structural variants through optical genome mapping integrated with karyotyping

Autoren: Xiaoxi Zhu Huiling Zheng Xue Wan et al.

Quelle: Frontiers in Genetics, Vol 16 (2025)

Schlagwörter: recurrent spontaneous abortion, structural variations, chromosomal karyotype analysis, optical genome mapping, Kif7, Genetics, QH426-470

Dateibeschreibung: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2025.1605461/full; https://doaj.org/toc/1664-8021

Zugangs-URL: https://doaj.org/article/91b69803e53e49398d30026257ed80c8

SVEA: an accurate model for structural variation detection using multi-channel image encoding and enhanced AlexNet architecture

Autoren: Taixing Qiu Jiawei Li Yan Guo et al.

Quelle: Journal of Translational Medicine, Vol 23, Iss 1, Pp 1-15 (2025)

Schlagwörter: Structural variations, Deep learning, Multi-head Self-attention mechanism, Multi-channel encoding, Medicine

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1479-5876

Zugangs-URL: https://doaj.org/article/53ab2c73723142228bf122dfc8888265

High level of complexity and global diversity of the 3q29 locus revealed by optical mapping and long-read sequencing

Autoren: Yilmaz, Feyza Gurusamy, Umamaheswaran Mosley, Trenell J et al.

Quelle: Genome Medicine. 15(1)

Schlagwörter: 31 Biological Sciences (for-2020), 3105 Genetics (for-2020), Biotechnology (rcdc), Human Genome (rcdc), Clinical Research (rcdc), Genetics (rcdc), 2.1 Biological and endogenous factors (hrcs-rac), Humans (mesh), Segmental Duplications, Genomic (mesh), Chromosome Mapping (mesh), Genomics (mesh), Syndrome (mesh), Haplotypes (mesh), DNA Copy Number Variations (mesh), 3q29, Structural variations, Genomic disorders, Schizophrenia, NAHR, Copy number variant(s), Humans (mesh), Syndrome (mesh), Chromosome Mapping (mesh), Genomics (mesh), Haplotypes (mesh), DNA Copy Number Variations (mesh), Segmental Duplications, Genomic (mesh), 3q29, Copy number variant(s), Genomic disorders, NAHR, Schizophrenia, Structural variations, Humans (mesh), Segmental Duplications, Genomic (mesh), Chromosome Mapping (mesh), Genomics (mesh), Syndrome (mesh), Haplotypes (mesh), DNA Copy Number Variations (mesh), 0604 Genetics (for), 1103 Clinical Sciences (for), 3105 Genetics (for-2020)

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/6cv3233c
https://escholarship.org/content/qt6cv3233c/qt6cv3233c.pdf

Comparative Analyses Reveal Potential Genetic Variations in Hypoxia- and Mitochondria-Related Genes Among Six Strains of Common Carp Cyprinus carpio

Autoren: Mohamed H. Abo-Raya Jing Ke Jun Wang et al.

Quelle: Fishes, Vol 10, Iss 10, p 509 (2025)

Schlagwörter: common carp, hypoxia, mitochondria, positive selection, structural variations, collinearity, Biology (General), QH301-705.5, Genetics, QH426-470

Dateibeschreibung: electronic resource

Relation: https://www.mdpi.com/2410-3888/10/10/509; https://doaj.org/toc/2410-3888

Zugangs-URL: https://doaj.org/article/4bcd25846ce144ce9018fa2ea5ac2b25

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Autoren: Lee, HoJoon Greer, Stephanie U Pavlichin, Dmitri S et al.

Quelle: Cell Reports Methods. 3(8)

Schlagwörter: 31 Biological Sciences (for-2020), 3102 Bioinformatics and Computational Biology (for-2020), Genetics (rcdc), Generic health relevance (hrcs-hc), Humans (mesh), Conserved Sequence (mesh), Haploidy (mesh), Neoplasms, Squamous Cell (mesh), Polymorphism, Genetic (mesh), Skin Neoplasms (mesh), Human Pangenome Reference Consortium, Humans (mesh), Neoplasms, Squamous Cell (mesh), Skin Neoplasms (mesh), Conserved Sequence (mesh), Haploidy (mesh), Polymorphism, Genetic (mesh), k-mer, pan-conserved segment, pangenome, reference genome, structural polymorphism, structural variations, Humans (mesh), Conserved Sequence (mesh), Haploidy (mesh), Neoplasms, Squamous Cell (mesh), Polymorphism, Genetic (mesh), Skin Neoplasms (mesh)

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/274631dp
https://escholarship.org/content/qt274631dp/qt274631dp.pdf

Impact of structural variations and genome partitioning on bread wheat hybrid performance

Autoren: Gimenez, Kevin Blanc, Pierre Argillier, Odile et al.

Weitere Verfasser: Gimenez, Kevin Blanc, Pierre Argillier, Odile et al.

Quelle: Functional & Integrative Genomics. 25

Schlagwörter: Chromosome partitioning, [SDV] Life Sciences [q-bio], [SDV.GEN.GPL] Life Sciences [q-bio]/Genetics/Plants genetics, Triticum aestivum, Heterosis, [SDV.BV] Life Sciences [q-bio]/Vegetal Biology, Structural variations, Heterotic groups

Elucidating Structural Variations at Heterogeneous Interfaces in Polymer Blends Using Evolved Gas Analysis with Time-of-Flight Mass Spectrometry Under Field Ionization

Autoren: Ryota Watanabe Taiki Ozawa Mayumi Kishi et al.

Schlagwörter: Biophysics, Biochemistry, Medicine, Infectious Diseases, Space Science, Biological Sciences not elsewhere classified, Chemical Sciences not elsewhere classified, Physical Sciences not elsewhere classified, scale structural variations, interpretation significantly challenging, incorporating 1 wt, flight mass spectrometry, elucidating structural variations, resolution mass spectra, complex polymer systems, masebs chemically interacts, excess unreacted masebs, masebs ), denoted, pyrolysis products derived, using field ionization, field ionization, pyrolysis products, spectra make, demonstrated using, masebs enhanced, pyrolysis behavior, polymer blends, pa6 ), novel method

Verfügbarkeit: https://doi.org/10.1021/acs.analchem.5c03224.s001
https://figshare.com/articles/journal_contribution/Elucidating_Structural_Variations_at_Heterogeneous_Interfaces_in_Polymer_Blends_Using_Evolved_Gas_Analysis_with_Time-of-Flight_Mass_Spectrometry_Under_Field_Ionization/29840282

The Elephant Evolved p53 Isoforms that Escape MDM2-Mediated Repression and Cancer

Autoren: Padariya, Monikaben Jooste, Mia-Lyn Hupp, Ted et al.

Quelle: Molecular biology and evolution. 39(7)

Schlagwörter: structural variations, model, p53 retrogenes, molecular evolution, Loxodonta africana, lifespan, Peto’s Paradox, intrinsic specificity

Dateibeschreibung: electronic

Zugangs-URL: https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-198296
https://doi.org/10.1093/molbev/msac149

Identification of structural variation related to spawn capability of Penaeus vannamei

Autoren: Yongyu Huang Hao Wang Shengyu Xu et al.

Quelle: BMC Genomics, Vol 25, Iss 1, Pp 1-10 (2024)

Schlagwörter: Structural variations, Spawn capabilities, Reproduction, Shrimp, Biotechnology, TP248.13-248.65, Genetics, QH426-470

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1471-2164

Zugangs-URL: https://doaj.org/article/4cbc4a5691ba4b1eb7e9907e4f801e11