Výsledky vyhľadávania - "multi-omics integration algorithms"

Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data

Autori: Chuxi Xiao Yixin Chen Qiuchen Meng a ďalší

Zdroj: Brief Bioinform

Predmety: 0301 basic medicine, 03 medical and health sciences, Cell Cycle, 0206 medical engineering, RNA, Review, 02 engineering and technology, Multiomics, Algorithms

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/38493343

Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data

Autori: Chuxi Xiao Yixin Chen Lei Wei a ďalší

Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data.

Autori: Xiao, Chuxi Chen, Yixin Meng, Qiuchen a ďalší

Zdroj: Briefings in Bioinformatics; Mar2024, Vol. 25 Issue 2, p1-13, 13p

Predmety: MULTIOMICS, RNA, DATA integration, ALGORITHMS, DATA visualization

Guide to Metabolomics Analysis: A Bioinformatics Workflow

Autori: Yang Chen En-Min Li Li-Yan Xu

Zdroj: Metabolites, Vol 12, Iss 357, p 357 (2022)

Predmety: metabolomics, metabolomics analysis tools, metabolic pathways summary, multi-omics integration algorithms, Microbiology, QR1-502

Relation: https://www.mdpi.com/2218-1989/12/4/357; https://doaj.org/toc/2218-1989; https://doaj.org/article/4f512a497e01462997db3e8dd42db8cf

Dostupnosť: https://doi.org/10.3390/metabo12040357
https://doaj.org/article/4f512a497e01462997db3e8dd42db8cf

Integrative multi‐omic and machine learning approach for prognostic stratification and therapeutic targeting in lung squamous cell carcinoma.

Autori: Zhang, Xiao Zhang, Pengpeng Ren, Qianhe a ďalší

Zdroj: Biofactors; Jan/Feb2025, Vol. 51 Issue 1, p1-25, 25p

Predmety: MULTIOMICS, MACHINE learning, PROGNOSTIC models, IMMUNOTHERAPY, BIOMARKERS, LUNG cancer, DRUG target, TUMOR microenvironment

Cancer molecular subtyping using limited multi-omics data with missingness.

Autori: Bu, Yongqi Liang, Jiaxuan Li, Zhen a ďalší

Zdroj: PLoS Computational Biology; 12/26/2024, Vol. 20 Issue 12, p1-34, 34p

Predmety: LIFE sciences, MULTIOMICS, ARTIFICIAL intelligence, BIOLOGICAL systems, TRANSCRIPTOMES, MULTIPLE imputation (Statistics)

Integrating transcriptomics and proteomics to analyze the immune microenvironment of cytomegalovirus associated ulcerative colitis and identify relevant biomarkers.

Autori: Chen, Yang Zheng, Qingqing Wang, Hui a ďalší

Zdroj: BioData Mining; 8/27/2024, Vol. 17 Issue 1, p1-17, 17p

Predmety: INFLAMMATORY bowel diseases, MACHINE learning, CYTOMEGALOVIRUS diseases, ULCERATIVE colitis, GENE regulatory networks, SUBSET selection

A denoised multi-omics integration framework for cancer subtype classification and survival prediction.

Autori: Pang, Jiali Liang, Bilin Ding, Ruifeng a ďalší

Zdroj: Briefings in Bioinformatics; Sep2023, Vol. 24 Issue 5, p1-12, 12p

Predmety: MULTIOMICS, TUMOR classification, MACHINE learning, FEATURE selection, RENAL cancer, NUCLEOTIDE sequencing

Guide to Metabolomics Analysis: A Bioinformatics Workflow.

Autori: Chen, Yang Li, En-Min Xu, Li-Yan

Zdroj: Metabolites (2218-1989); Apr2022, Vol. 12 Issue 4, pN.PAG-N.PAG, 20p

Predmety: METABOLOMICS, PHENOMENOLOGICAL biology, BIOINFORMATICS, BIOINFORMATICS software, WORKFLOW, STATISTICAL software, WORKFLOW software

Reprogramming the tumor microenvironment to overcome immunotherapy resistance in pancreatic cancer.

Autori: Hui, Xianfeng Tian, Xiaowei Ding, Shihuan a ďalší

Zdroj: Frontiers in Immunology; 2025, p1-20, 20p

Multi-omics strategies for biomarker discovery and application in personalized oncology.

Autori: Jiang, Ziming Zhang, Haoxuan Gao, Yibo a ďalší

Zdroj: Molecular Biomedicine; 11/21/2025, Vol. 6 Issue 1, p1-32, 32p

Predmety: BIOMARKERS, CANCER diagnosis, MULTIOMICS, MACHINE learning, CANCER cells, GENOMICS, CLINICAL decision making, DRUG target

Endoplasmic reticulum stress orchestrates tumor metabolism and immunity: new insights into immunometabolic therapeutics.

Autori: Fu, Zhang Li, Mengyue Zhou, Huaixiang a ďalší

Zdroj: Frontiers in Immunology; 2025, p1-21, 21p

Predmety: ENDOPLASMIC reticulum stress, IMMUNITY, TUMORS, THERAPEUTICS, METABOLIC reprogramming, CANCER treatment, IMMUNOREGULATION, TUMOR microenvironment

Identification of novel molecular subtypes and construction of a prognostic signature via multi-omics analysis and machine learning in lung adenocarcinoma.

Autori: Ma, Ke Xu, Jie Wang, Congyue a ďalší

Zdroj: Frontiers in Oncology; 2025, p1-21, 21p

Predmety: MULTIOMICS, PROGNOSIS, GENETIC variation, MACHINE learning, DRUG target, LUNG tumors, TUMOR microenvironment

scGT:integration algorithm for single-cell RNA-seq and ATAC-seq based on graph transformer Open Access.

Autori: Qi, Yunjing Kan, Yulong Qi, Jing a ďalší

Zdroj: Bioinformatics; Jul2025, Vol. 41 Issue 7, p1-12, 12p

Predmety: DATA integration, MULTIOMICS, RNA sequencing, TRANSFORMER models, BIOLOGICAL variation

A Review of Genomic, Transcriptomic, and Proteomic Applications in Edible Fungi Biology: Current Status and Future Directions.

Autori: Xie, Muyun Wang, Jing Wang, Feixiang a ďalší

Zdroj: Journal of Fungi; Jun2025, Vol. 11 Issue 6, p422, 45p

Predmety: LIFE sciences, EDIBLE fungi, MOLECULAR biology, TRANSCRIPTOMES, GENETIC code, METABOLOMICS

Editorial: Interactions at the viral-host nexus in animals: from omics insights to immune modulation.

Autori: Qu, Shuliang Munir, Muhammad Qian, Jing a ďalší

Zdroj: Frontiers in Cellular & Infection Microbiology; 2025, p1-3, 3p

Predmety: HOST-virus relationships, IMMUNOREGULATION, SYSTEMS biology

Advances on the Role of Lung Macrophages in the Pathogenesis of Chronic Obstructive Pulmonary Disease in the Era of Single-Cell Genomics.

Autori: Xiaohua Li Hui Zhang Xianhong Chi a ďalší

Zdroj: International Journal of Medical Sciences; 2025, Vol. 22 Issue 2, p298-308, 11p

From Images to Genes: Radiogenomics Based on Artificial Intelligence to Achieve Non‐Invasive Precision Medicine in Cancer Patients.

Autori: Guo, Yusheng Li, Tianxiang Gong, Bingxin a ďalší

Zdroj: Advanced Science; 1/13/2025, Vol. 12 Issue 2, p1-29, 29p

Predmety: POSITRON emission tomography, COMPUTER-assisted image analysis (Medicine), ARTIFICIAL intelligence, INDIVIDUALIZED medicine, RADIOMICS

Benchmarking algorithms for single-cell multi-omics prediction and integration

Autori: Yinlei Hu Siyuan Wan Yuanhanyu Luo a ďalší

Zdroj: Nature Methods. 21:2182-2194

Predmety: Proteomics, Benchmarking, Humans, Computational Biology, Genomics, Single-Cell Analysis, Transcriptome, Multiomics, Algorithms, Chromatin

Prístupová URL adresa: https://pubmed.ncbi.nlm.nih.gov/39322753

Advancing immunotherapy for melanoma: the critical role of single-cell analysis in identifying predictive biomarkers.

Autori: Ru He Jiaan Lu Jianglong Feng a ďalší

Zdroj: Frontiers in Immunology; 2024, p1-9, 9p

Predmety: IMMUNOTHERAPY, IMMUNE checkpoint inhibitors, BIOMARKERS, GENETIC markers, SKIN cancer, MELANOMA, IMMUNE recognition, EPITHELIAL-mesenchymal transition