Suchergebnisse - "microbiomes"

Leveraging large language models to predict antibiotic resistance in Mycobacterium tuberculosis

Autoren: Conrad Testagrose Sakshi Pandey Mohammadali Serajian et al.

Quelle: Bioinformatics

Schlagwörter: Bioinformatics of Microbes and Microbiomes

GiantHunter: accurate detection of giant virus in metagenomic data using reinforcement-learning and Monte Carlo tree search

Autoren: Fuchuan Qu Cheng Peng Jiaojiao Guan et al.

Quelle: Bioinformatics

Schlagwörter: Genomics (q-bio.GN), FOS: Biological sciences, Quantitative Biology - Genomics, Bioinformatics of Microbes and Microbiomes

Zugangs-URL: http://arxiv.org/abs/2501.15472

Unlocking the power of human milk and infant feeding: Understanding how nutrition and early microbiota interaction shapes health programming

Autoren: Alexandra Zhernakova Moran Yassour Lindsay J. Hall et al.

Weitere Verfasser: Alexandra Zhernakova Moran Yassour Lindsay J. Hall et al.

Quelle: Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)

Schlagwörter: HMOs, Infancy, bioactive compounds, microbiomes, breastfeeding, Human milk, Breastfeeding, Biotics, human milk, Microbiome, Bioactive compounds

Dateibeschreibung: application/pdf

Zugangs-URL: https://api.elsevier.com/content/abstract/scopus_id/105007545906
http://hdl.handle.net/10261/394540

CD8+ T Cell-Derived Perforin Exacerbates Dysbiosis and Inflammatory Bowel Disease via β-Hydroxybutyrate Suppression in Mouse Colonic Epithelium

Autoren: Shiyang Huang Lehan Pan Mingyang Li et al.

Quelle: J Inflamm Res
Journal of Inflammation Research, Vol Volume 18, Iss Issue 1, Pp 5895-5910 (2025)

Schlagwörter: β-hydroxybutyrate, microbiomes, inflammatory bowel disease, Pathology, RB1-214, Therapeutics. Pharmacology, RM1-950, CD8+ T cells, perforin, Original Research

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/40331160
https://doaj.org/article/2a7a7fbf647c4648a42af6fae0683e67

Atmospheric methane consumption in arid ecosystems acts as a reverse chimney and is accelerated by plant-methanotroph biomes.

Autoren: Delherbe, Nathalie Gomez, Oscar Plominsky, Alvaro et al.

Quelle: The ISME Journal. 19(1)

Schlagwörter: Methylocaldum, and methane cycle, arid soil, desert microbiomes, methanotrophs, plants, Methane, Soil Microbiology, California, Microbiota, Metagenomics, Ecosystem, Desert Climate, Metagenome, Bacteria, Plants, Phylogeny, Atmosphere

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/438906r8
https://escholarship.org/content/qt438906r8/qt438906r8.pdf

Banana genotype-associated microbiomes play an essential role in suppressing Fusarium wilt

Autoren: Wenlong Zhang Shengtao Xu Tingting Bai et al.

Quelle: BMC Plant Biology, Vol 25, Iss 1, Pp 1-13 (2025)

Schlagwörter: Fusarium wilt of banana, Genotype-associated microbiomes, Soil health, Antagonistic fungi, Botany, QK1-989

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/1471-2229

Zugangs-URL: https://doaj.org/article/aa259996426142ae90d68ddd6cc6f398

Aqueous extract of Acer truncatum leaves retards Drosophila melanogaster senescence by regulating amino acid metabolism and gut microbiota

Autoren: Feng Liu Yuchan Zhang Lulu Zhang et al.

Quelle: Scientific Reports, Vol 15, Iss 1, Pp 1-14 (2025)

Schlagwörter: Aqueous extract, Acer truncatum leaves, Anti-aging, Microbiomes, Metabolomics, Medicine, Science

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/2045-2322

Zugangs-URL: https://doaj.org/article/800bf19fa68e4ace9b3381f22ce36a12

Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses

Autoren: Lui, Lauren M Nielsen, Torben N

Quelle: mSystems. 9(9)

Schlagwörter: 4101 Climate Change Impacts and Adaptation (for-2020), 31 Biological Sciences (for-2020), 3103 Ecology (for-2020), 3107 Microbiology (for-2020), 41 Environmental Sciences (for-2020), Human Genome (rcdc), Microbiome (rcdc), Genetics (rcdc), Microbiota (mesh), Metagenomics (mesh), Estuaries (mesh), San Francisco (mesh), Viruses (mesh), Metagenome (mesh), Bacteria (mesh), Archaea (mesh), Eukaryota (mesh), Genome, Viral (mesh), metagenomics, long-read sequencing, estuarine microbiomes, eDNA, genome binning, Nanopore, viruses, Bacteria (mesh), Viruses (mesh), Archaea (mesh), Genome, Viral (mesh), San Francisco (mesh), Metagenome (mesh), Metagenomics (mesh), Eukaryota (mesh), Estuaries (mesh), Microbiota (mesh), Nanopore, eDNA, estuarine microbiomes, genome binning, long-read sequencing, metagenomics, viruses, Microbiota (mesh), Metagenomics (mesh), Estuaries (mesh), San Francisco (mesh), Viruses (mesh), Metagenome (mesh), Bacteria (mesh), Archaea (mesh), Eukaryota (mesh), Genome, Viral (mesh)

Zugangs-URL: https://escholarship.org/uc/item/5p15963x

Is the Juice Worth the Squeeze? Evaluating Peptide Nucleic Acid Blockers for Reducing Plant DNA Contamination in 16S rRNA Gene Sequencing

Autoren: Lena Flörl Nicholas A. Bokulich

Quelle: PhytoFrontiers, Vol 5, Iss 1, Pp 17-21 (2025)

Schlagwörter: next generation sequencing, 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, PNA blockers, QK1-989, host DNA contamination, Botany, Plant culture, next-generation sequencing, plant-associated microbiomes, SB1-1110

Zugangs-URL: https://doaj.org/article/8e44c26b4ea34b49aa2cd0fb77a3e215

Organelles in the ointment: improved detection of cryptic mitochondrial reads resolves many unknown sequences in cross-species microbiome analyses

Autoren: Sonett, Dylan Brown, Tanya Bengtsson Palme, Johan et al.

Quelle: Isme Communications. 4(1)

Schlagwörter: animal microbiomes, mitochondria, mitochondrial diversity, microbiome analysis, amplicon sequencing

Dateibeschreibung: electronic

Zugangs-URL: https://research.chalmers.se/publication/544398
https://research.chalmers.se/publication/544398/file/544398_Fulltext.pdf

Host-associated microbes mitigate the negative impacts of aquatic pollution

Autoren: Diner, Rachel E Allard, Sarah M Gilbert, Jack A

Quelle: mSystems. 9(10)

Schlagwörter: Biological Sciences, Ecology, Environmental Management, Microbiology, Environmental Sciences, Life Below Water, Microbiota, Water Pollution, Aquatic Organisms, Ecosystem, Animals, Water Microbiology, Humans, Biodegradation, Environmental, bioremediation, aquatic pollution, microbiomes, environmental stress, microbiology, systems biology, coastal resilience

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/0237c9m0
https://escholarship.org/content/qt0237c9m0/qt0237c9m0.pdf

Adaptive and metabolic convergence in rhizosphere and gut microbiomes

Autoren: Diana Ilyaskina Safaa Altveş Lemeng Dong et al.

Quelle: Microbiome, Vol 13, Iss 1, Pp 1-23 (2025)

Schlagwörter: Host-microbiome interactions, Microbial metabolites, Microbial resilience, Comparative microbiomes, Sustainable agriculture, Human health, Microbial ecology, QR100-130

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/2049-2618

Zugangs-URL: https://doaj.org/article/29ac5ae7751b41d2ba2a37983a76a853

Parasitic plant Cistanche tubulosa shapes the bacterial community structure and functional composition of the salt-tolerant host Tamarix chinensis across different parasitic statuses

Autoren: Luyao Tang Xiaoshan Liu Shuhong Lin et al.

Quelle: Environmental Microbiome, Vol 20, Iss 1, Pp 1-19 (2025)

Schlagwörter: Root-associated microbiomes, Community assembly, Parasitic statuses, Salt stress, Cistanche tubulosa, Tamarix chinensis, Environmental sciences, GE1-350, Microbiology, QR1-502

Dateibeschreibung: electronic resource

Relation: https://doaj.org/toc/2524-6372

Zugangs-URL: https://doaj.org/article/a58b13ef16134c4aa91c7ca84938c911

Genomic insights of cyanobacteria populations in a coral reef ecosystem

Autoren: Beito, Carolina Tavares

Schlagwörter: Cyanobacteria, Coral reef microbiomes, Metagenome-assembled genomes (MAGs), Comparative genomics, Metabolic pathway analysis, Host-microbe interactions

Dateibeschreibung: application/pdf

Verfügbarkeit: http://hdl.handle.net/10773/45459

Temporal characterization of the gut microbiome and metabolome in preterm infants

Autoren: Lauren C. Beck Thomas Sproat Christopher A. Lamb et al.

Quelle: Microb Genom

Schlagwörter: Metagenomics and Microbiomes

Correlation with viruses enhances network complexity and stability of co-occurrence prokaryotes across the oceans

Autoren: Bo Wang Yantao Liang Kaiyue Lian et al.

Quelle: mSystems
mSystems, Vol 10, Iss 7 (2025)

Schlagwörter: prokaryotic microbiomes, community complexity, network stability, marine viruses, environmental gradients, Microbiology, QR1-502, Research Article

Zugangs-URL: https://doaj.org/article/711a08baad8b42daa5e65a91f97b6d21

Multi-omics time-series analysis in microbiome research: a systematic review

Autoren: Moiz Khan Sherwani Matti O. Ruuskanen Dylan Feldner-Busztin et al.

Quelle: Sherwani, M K, Ruuskanen, M O, Feldner-Busztin, D, Firbas, P N, Boza, G, Móréh, Á, Borman, T, Erawijantari, P P, Scheuring, I, Gopalakrishnan, S & Lahti, L 2025, ' Multi-omics time-series analysis in microbiome research : a systematic review ', Briefings in Bioinformatics, vol. 26, no. 5, bbaf502 . https://doi.org/10.1093/bib/bbaf502

Schlagwörter: machine learning, statistical modeling, time-series, host-associated microbiomes, multi-omics

Dateibeschreibung: application/pdf

Zugangs-URL: https://curis.ku.dk/ws/files/513645767/bbaf502.pdf

Integrative systems biology approaches for analyzing microbiome dysbiosis and species interactions

Autoren: Syed Sabih Ur Rehman Muhammad Ibtisam Nasar Cristina S Mesquita et al.

Quelle: Brief Bioinform

Schlagwörter: metagenomics, microbiomes, microbial dysbiosis, microbial community modeling, genome-scale metabolic model, mathematical modeling, gut microbiome, microbiome-Associated disease, Review, integrative systems biology, ecological network model

Zugangs-URL: https://research.wur.nl/en/publications/integrative-systems-biology-approaches-for-analyzing-microbiome-d
https://doi.org/10.1093/bib/bbaf323

Predicting coarse-grained representations of biogeochemical cycles from metabarcoding data

Autoren: Arnaud Belcour Loris Megy Sylvain Stephant et al.

Weitere Verfasser: Arnaud Belcour Loris Megy Sylvain Stephant et al.

Quelle: Bioinformatics

Schlagwörter: [SDV.MP]Life Sciences [q-bio]/Microbiology and Parasitology, [SDU.STU.GC]Sciences of the Universe [physics]/Earth Sciences/Geochemistry, [SDU.STU.GC] Sciences of the Universe [physics]/Earth Sciences/Geochemistry, Bioinformatics of Microbes and Microbiomes, [INFO.INFO-BI]Computer Science [cs]/Bioinformatics [q-bio.QM], [SDV.MP] Life Sciences [q-bio]/Microbiology and Parasitology, [INFO.INFO-BI] Computer Science [cs]/Bioinformatics [q-bio.QM]

Dateibeschreibung: application/pdf

Zugangs-URL: https://inria.hal.science/hal-04938367v2
https://doi.org/10.1093/bioinformatics/btaf230
https://inria.hal.science/hal-04938367v2/document

Serum metabolic and microbial profiling yields insights into promoting effect of tryptophan‐related metabolites for health longevity in centenarians

Autoren: Xiaorou Qiu Chao Mu Jie Hu et al.

Quelle: Imeta
iMeta, Vol 4, Iss 3, Pp n/a-n/a (2025)

Schlagwörter: multi‐omics analysis, Computer applications to medicine. Medical informatics, R858-859.7, oral microbiomes, centenarians, gut microbiomes, tryptophan metabolism, serum metabolome, Research Article

Zugangs-URL: https://doaj.org/article/bb0ce768b05a4f58a4b88819bbe1ef03