Search Results - "microarray data clustering"

Statistical Analysis of Microarray Data Clustering using NMF, Spectral Clustering, Kmeans, and GMM

Authors: Andri Mirzal

Source: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 19:1173-1192

Subject Terms: Normal Distribution, Cluster Analysis, 0101 mathematics, 01 natural sciences, Algorithms

Access URL: https://pubmed.ncbi.nlm.nih.gov/32956065
https://pubmed.ncbi.nlm.nih.gov/32956065/
https://www.ncbi.nlm.nih.gov/pubmed/32956065

Genomic signal processing for enhanced microarray data clustering

Authors: Sungoor, Ala M. H.

Subject Terms: 502.85, Computer science and informatics

Access URL: https://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.506741

Microarray data clustering and visualization tool using self-organizing maps

Authors: Abigaile Dionisio Zach Andrei Marasigan Geoffrey A. Solano

Source: 2015 6th International Conference on Information, Intelligence, Systems and Applications (IISA). :1-5

Subject Terms: 2. Zero hunger, 0301 basic medicine, 03 medical and health sciences, 0206 medical engineering, 02 engineering and technology

Access URL: https://dblp.uni-trier.de/db/conf/iisa/iisa2015.html#MarasiganDS15
http://ieeexplore.ieee.org/document/7387955/
https://ieeexplore.ieee.org/document/7387955/

Marked Point Processes for Microarray Data Clustering

Authors: Henni, Khadidja Alata, Olivier Elidrissi, Abdellatif et al.

Contributors: Henni, Khadidja Alata, Olivier Elidrissi, Abdellatif et al.

Source: Studies in Classification, Data Analysis, and Knowledge Organization ISBN: 9783319557229

Subject Terms: [INFO.INFO-TS]Computer Science [cs]/Signal and Image Processing

Access URL: https://rd.springer.com/chapter/10.1007/978-3-319-55723-6_11
https://link.springer.com/chapter/10.1007/978-3-319-55723-6_11
https://hal-ujm.archives-ouvertes.fr/ujm-01598999

Comparative Analysis of Genomic Signal Processing for Microarray Data Clustering

Authors: Ala Sungoor Robert S. H. Istepanian J-C Nebel

Source: IEEE Transactions on NanoBioscience. 10:225-238

Subject Terms: 0301 basic medicine, Electronic Data Processing, Leukemia, Models, Genetic, Wavelet Analysis, Signal Processing, Computer-Assisted, Comorbidity, Genomics, Programming, Linear, 02 engineering and technology, Microarray Analysis, 03 medical and health sciences, Fractals, 0202 electrical engineering, electronic engineering, information engineering, Animals, Cluster Analysis, Humans, Computer Simulation

Access URL: http://staffnet.kingston.ac.uk/~ku33185/Papers/PDFformat/NanoBio11_draft.pdf
https://pubmed.ncbi.nlm.nih.gov/22157075
https://eprints.kingston.ac.uk/21512/
https://ieeexplore.ieee.org/xpl/articleDetails.jsp?arnumber=6096429
http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.ieee-000006096429
https://europepmc.org/article/MED/22157075
https://www.infona.pl/resource/bwmeta1.element.ieee-art-000006096429
https://ieeexplore.ieee.org/document/6096429/

A hybrid PSO-GSA strategy for high-dimensional optimization and microarray data clustering

Authors: Shiquan Sun Qinke Peng

Source: 2014 IEEE International Conference on Information and Automation (ICIA). :41-46

Subject Terms: 0202 electrical engineering, electronic engineering, information engineering, 02 engineering and technology

Access URL: https://ieeexplore.ieee.org/document/6932623/
http://ieeexplore.ieee.org/document/6932623/
https://dblp.uni-trier.de/db/conf/icinfa/icinfa2014.html#SunP14

A simple and robust algorithm for microarray data clustering based on gene population‐variance ratio metric

Authors: Amit Konar Kasturi Bhattacharjee Soumyadeep Chatterjee

Source: Biotechnology Journal. 4:1357-1361

Subject Terms: 0301 basic medicine, 03 medical and health sciences, Models, Genetic, Gene Expression Profiling, 0206 medical engineering, Cluster Analysis, Computer Simulation, 02 engineering and technology, Algorithms, Oligonucleotide Array Sequence Analysis

Access URL: https://pubmed.ncbi.nlm.nih.gov/19579218
https://www.ncbi.nlm.nih.gov/pubmed/19579218

Determining Potential Yeast Longevity Genes via PPI Networks and Microarray Data Clustering Analysis

Authors: Bernard Chen Fusheng Tang Roshan Doolabh

Source: 2013 12th International Conference on Machine Learning and Applications. :370-373

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences

Access URL: https://ieeexplore.ieee.org/document/6784645/
https://dblp.uni-trier.de/db/conf/icmla/icmla2013-1.html#ChenDT13
http://ieeexplore.ieee.org/document/6784645/

An information theoretic divergence for microarray data clustering

Authors: Nguyen Minh Phuong Nguyen Xuan Vinh

Source: 2008 8th IEEE International Conference on BioInformatics and BioEngineering. :1-7

Subject Terms: 0301 basic medicine, 03 medical and health sciences, 0206 medical engineering, 02 engineering and technology

Access URL: http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.ieee-000004696736
https://dblp.uni-trier.de/db/conf/bibe/bibe2008.html#NguyenP08
https://research.monash.edu/en/publications/an-information-theoretic-divergence-for-microarray-data-clusterin

Fractal dimension and wavelet decomposition for robust microarray data clustering

Authors: Jean-Christophe Nebel Ala Sungoor Robert S. H. Istepanian

Source: 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. :4106-4109

Subject Terms: 0301 basic medicine, 0303 health sciences, Genome, Models, Statistical, Computers, Genetic Vectors, Reproducibility of Results, Signal Processing, Computer-Assisted, Genomics, 03 medical and health sciences, Fractals, Cluster Analysis, Humans, Algorithms, Software, Oligonucleotide Array Sequence Analysis

Access URL: https://pubmed.ncbi.nlm.nih.gov/19163615
http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.ieee-000004650112

Linear Predictive Coding and Wavelet Decomposition for Robust Microarray Data Clustering

Authors: Robert S. H. Istepanian Jean-Christophe Nebel Ala Sungoor

Source: 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society. :4629-4632

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Gene Expression Regulation, Gene Expression Profiling, Animals, Cluster Analysis, Humans, Computer Simulation, Sensitivity and Specificity, Software, Oligonucleotide Array Sequence Analysis

Access URL: https://pubmed.ncbi.nlm.nih.gov/18003037
https://ieeexplore.ieee.org/document/4353371/
https://www.ncbi.nlm.nih.gov/pubmed/18003037
http://europepmc.org/abstract/MED/18003037
http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.ieee-000004353371

Combining LPP with PCA for microarray data clustering

Authors: Rongfang Bie Chuanliang Chen Ping Guo

Source: 2008 IEEE Congress on Evolutionary Computation (IEEE World Congress on Computational Intelligence). :2081-2086

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences

Linear Predictive Coding for Enhanced Microarray Data Clustering

Authors: Ala Sungoor Jean-Christophe Nebel Robert S. H. Istepanian

Source: 2007 IEEE International Workshop on Genomic Signal Processing and Statistics. :1-4

Subject Terms: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences

Access URL: https://eprints.kingston.ac.uk/id/eprint/8399/
https://ieeexplore.ieee.org/document/4365815/
http://yadda.icm.edu.pl/yadda/element/bwmeta1.element.ieee-000004365815

Assessment of Microarray Data Clustering Results Based on a New Geometrical Index for Cluster Validity

Authors: Hong Yan Benson S. Y. Lam

Source: Soft Computing. 11:341-348

Subject Terms: 0206 medical engineering, 0202 electrical engineering, electronic engineering, information engineering, 02 engineering and technology

Access URL: https://link.springer.com/article/10.1007/s00500-006-0087-1
https://link.springer.com/content/pdf/10.1007%2Fs00500-006-0087-1.pdf
https://scholars.cityu.edu.hk/en/publications/assessment-of-microarray-data-clustering-results-based-on-a-new-geometrical-index-for-cluster-validity(5f9a9079-d9b5-4fee-9fd3-e158d9efc7fe).html
https://dblp.uni-trier.de/db/journals/soco/soco11.html#LamY07

DNA microarray data clustering using growing self organizing networks

Authors: K. Jackson Irena Koprinska

Source: Proceedings of the 9th International Conference on Neural Information Processing, 2002. ICONIP '02.. 2:805-808

Subject Terms: 0202 electrical engineering, electronic engineering, information engineering, 02 engineering and technology

Access URL: https://ieeexplore.ieee.org/document/1198170/

An integrated tool for microarray data clustering and cluster validity assessment

Authors: Francisco Azuaje Nadia Bolshakova Pádraig Cunningham

Source: Proceedings of the 2004 ACM symposium on Applied computing. :133-137

Subject Terms: 0301 basic medicine, Gene Expression Profiling, 0206 medical engineering, Information Storage and Retrieval, 02 engineering and technology, Pattern Recognition, Automated, Systems Integration, Benchmarking, User-Computer Interface, 03 medical and health sciences, Cluster Analysis, Database Management Systems, Algorithms, Software, Oligonucleotide Array Sequence Analysis

Access URL: https://academic.oup.com/bioinformatics/article-pdf/21/4/451/9642457/Bti190.pdf
https://pubmed.ncbi.nlm.nih.gov/15608048
https://paperity.org/p/41731938/an-integrated-tool-for-microarray-data-clustering-and-cluster-validity-assessment
https://dblp.uni-trier.de/db/journals/bioinformatics/bioinformatics21.html#BolshakovaAC05
https://www.ncbi.nlm.nih.gov/pubmed/15608048
http://bioinformatics.oxfordjournals.org/content/21/4/451.full
https://academic.oup.com/bioinformatics/article/21/4/451/203601
https://academic.oup.com/bioinformatics/article-pdf/21/4/451/9642457/Bti190.pdf
http://www.cs.tcd.ie/publications/tech-reports/reports.04/TCD-CS-2004-09.pdf
https://dl.acm.org/citation.cfm?doid=967900.967929
https://dblp.uni-trier.de/db/conf/sac/sac2004.html#BolshakovaAC04
https://doi.org/10.1145/967900.967929
http://portal.acm.org/citation.cfm?id=967900.967929
http://cs.njit.edu/usman/courses/biol794_spring05/M2.pdf

Variance of Difference as Distance Like Measure in Time Series Microarray Data Clustering

Authors: Mukhopadhyay, Sayan

Thesis Advisors: Pal, Debnath

Subject Terms: Microarray Data Clustering, Time Series Microarray Data Clustering, Time Series Microarrays, Microarray Data Analysis, Microarray Gene Expression Data, Gene Expression Data Clustering, Time Series Gene Expression Data, Distance-based Data Clustering, Cancer related Gene Expression Data, Gene Ontology, Microarray Time Series, Autoregressive Model, Computer Science

Relation: G26721

Availability: http://etd.iisc.ernet.in/handle/2005/2986
http://etd.ncsi.iisc.ernet.in/abstracts/3848/G26721-Abs.pdf

Bioinformatics: Microarray Data Clustering and Functional Classification

Authors: Hsueh Fen Juan Hsuan Cheng Huang

Source: Methods in Molecular Biology ISBN: 9781588299444

Subject Terms: 0301 basic medicine, 0303 health sciences, Gene Expression Profiling, Computational Biology, Pattern Recognition, Automated, 03 medical and health sciences, Leukemia, Myeloid, Carcinogens, Tumor Cells, Cultured, Cluster Analysis, Humans, Tetradecanoylphorbol Acetate, Software, Oligonucleotide Array Sequence Analysis

Access URL: https://pubmed.ncbi.nlm.nih.gov/18220245
https://core.ac.uk/display/45863716
http://www.ncbi.nlm.nih.gov/pubmed/18220245
http://europepmc.org/abstract/MED/18220245
https://scholar.nycu.edu.tw/zh/publications/bioinformatics-microarray-data-clustering-and-functional-classifi
https://pubmed.ncbi.nlm.nih.gov/18220245/

DNA Microarray Data Clustering by Hidden Markov Models and Bayesian Information Criterion

Authors: Sakarindr Bhumiratana Jeerayut Chaijaruwanich Aompilai Manorat et al.

Source: Lecture Notes in Computer Science ISBN: 9783540370253

Access URL: https://rd.springer.com/chapter/10.1007/11811305_90
https://link.springer.com/content/pdf/10.1007%2F11811305_90.pdf
https://link.springer.com/chapter/10.1007/11811305_90
https://dblp.uni-trier.de/db/conf/adma/adma2006.html#CharoenkwanMCPB06

Subdimension-based similarity measure for DNA microarray data clustering

Authors: Benson S. Y. Lam Hong Yan

Source: Physical Review E. 74

Subject Terms: 03 medical and health sciences, 0302 clinical medicine, Artificial Intelligence, Gene Expression Profiling, Multigene Family, 0202 electrical engineering, electronic engineering, information engineering, Cluster Analysis, 02 engineering and technology, Algorithms, Oligonucleotide Array Sequence Analysis, Pattern Recognition, Automated

Access URL: https://pubmed.ncbi.nlm.nih.gov/17155095
https://pubmed.ncbi.nlm.nih.gov/17155095/
https://www.ncbi.nlm.nih.gov/pubmed/17155095
https://ui.adsabs.harvard.edu/abs/2006PhRvE..74d1906L/abstract