Search Results - "linear-time gradient algorithm"

Detecting Evolutionary Change-Points with Branch-Specific Substitution Models and Shrinkage Priors

Authors: Ji, Xiang Redelings, Benjamin Su, Shuo et al.

Source: Res Sq

Subject Terms: FOS: Computer and information sciences, Populations and Evolution, linear-time gradient algorithm, FOS: Biological sciences, Bayesian inference, Computation, Populations and Evolution (q-bio.PE), natural selection, branch-specific substitution model, maximum likelihood, Article, Computation (stat.CO)

Access URL: http://arxiv.org/abs/2507.08386
https://lirias.kuleuven.be/handle/20.500.12942/770638
https://lirias.kuleuven.be/handle/20.500.12942/773807
https://doi.org/10.21203/rs.3.rs-6926809/v1

Gradients Do Grow on Trees: A Linear-Time O(N)-Dimensional Gradient for Statistical Phylogenetics.

Authors: Ji, Xiang Zhang, Zhenyu Holbrook, Andrew et al.

Source: Molecular Biology and Evolution. 37(10)

Subject Terms: Infectious Diseases, Bioengineering, Networking and Information Technology R&D (NITRD), Good Health and Well Being, Algorithms, Evolution, Molecular, Flavivirus, Lassa virus, Models, Genetic, Phylogeny, linear-time gradient algorithm, random-effects molecular clock model, Bayesian inference, maximum likelihood, Biochemistry and Cell Biology, Evolutionary Biology, Genetics

File Description: application/pdf

Access URL: https://escholarship.org/uc/item/1fm0b35t
https://escholarship.org/content/qt1fm0b35t/qt1fm0b35t.pdf

Detecting Evolutionary Change-Points with Branch-Specific Substitution Models and Shrinkage Priors.

Authors: Ji X Redelings B Su S et al.

Source: ArXiv [ArXiv] 2025 Jul 11. Date of Electronic Publication: 2025 Jul 11.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101759493 Publication Model: Electronic Cited Medium: Internet ISSN: 2331-8422 (Electronic) Linking ISSN: 23318422 NLM ISO Abbreviation: ArXiv Subsets: PubMed not MEDLINE