Suchergebnisse - "functional genomics"

DA-HGL: a domain-augmented heterogeneous graph learning framework for protein function prediction Open Access.

Autoren: Hu, Sai Zhang, Wei Zhao, Bihai

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-14. 14p.

Schlagwörter: FUNCTIONAL genomics, GENE ontology, DATA integration, GRAPH neural networks, PROTEIN analysis

INAB: identify nucleic acid binding domain via cross-modal protein language models and multiscale computation Open Access.

Autoren: Zhang, Jun Zeng, Hao Chen, Junjie et al.

Quelle: Briefings in Bioinformatics. Sep2025, Vol. 26 Issue 5, p1-9. 9p.

Schlagwörter: NUCLEIC acids, FUNCTIONAL genomics, MULTISCALE modeling, DRUG design, GENETIC regulation, COMPUTATIONAL biology, PROTEIN-protein interactions

Near‐complete genome assembly of a transformation‐efficient elite inbred line LH244 and its comparison with B73.

Autoren: Tan, Kaiwen Liu, Xinxiang Wang, Zijian et al.

Quelle: Journal of Integrative Plant Biology. Nov2025, p1. 17p. 8 Illustrations.

Schlagwörter: *GENOME editing, *FUNCTIONAL genomics, *NUCLEOTIDE sequencing, *GENE mapping, *CORN, *GENE rearrangement

Development of a Protoplast‐Mediated Transformation System for Monilinia fructicola: A Tool for Functional Genomics.

Autoren: López, Anselmo Hahn, Matthias Gómez, María et al.

Quelle: Plant Pathology. Nov2025, p1. 10p. 5 Illustrations.

Schlagwörter: *GENETIC transformation, *FUNCTIONAL genomics, *PLASMIDS, *CRISPRS, *PATHOGENIC fungi, *GENOME editing, *PROTOPLASTS, *BROWN rot

Genomic Signatures of MASLD: How Genomics Is Redefining Our Understanding of Metabolic Liver Disease.

Autoren: Saliba-Gustafsson, Peter Härdfeldt, Jennifer Pedrelli, Matteo et al.

Quelle: International Journal of Molecular Sciences. Nov2025, Vol. 26 Issue 22, p10881. 16p.

Schlagwörter: *GENOME-wide association studies, *FUNCTIONAL genomics, *GENETIC profile, *FATTY liver, *GENE libraries, *GENETIC risk score, *INDIVIDUALIZED medicine

OrchidMD: An Integrated and User‐Interactive Orchid Multi‐Omics Database for Mining Genes and Biological Research.

Autoren: Wei, Yonglu Lin, Zengyu Xie, Qi et al.

Quelle: Plant Biotechnology Journal. Nov2025, p1. 13p. 5 Illustrations.

Schlagwörter: *MULTIOMICS, *FUNCTIONAL genomics, *TRANSCRIPTOMES, *GENOMICS, *ORCHIDS, *METABOLOMICS, *PHENOTYPES, *PROTEOMICS

Hiding in plain sight: advances in discovery and functional description of plant sORF-encoded peptides.

Autoren: Kearly, Alyssa Nelson, Andrew D L

Quelle: Journal of Experimental Botany. 11/12/2025, Vol. 76 Issue 19, p5698-5712. 15p.

Schlagwörter: *FUNCTIONAL genomics, *PEPTIDES, *PHYSIOLOGY, *PLANT molecular biology, *GENOMICS, *PROTEOMICS, *TRANSCRIPTOMES

Description of Sediminicola litoralis sp. nov. isolated from tidal flat sediment and functional genomic analysis of the genus Sediminicola.

Autoren: Liu, Yang Du, Juan Xiong, Xiong et al.

Quelle: BMC Microbiology. 11/12/2025, Vol. 25 Issue 1, p1-15. 15p.

Schlagwörter: *FUNCTIONAL genomics, *FLAVOBACTERIALES, *ESTUARINE sediments, *SPECIES diversity, *BACTERIA, *METABOLIC profile tests, *MARINE habitats

From Correlation to Causation: Defining Gene and RNA Function in Poultry Muscle Biology Using In Vivo Genetic Tools.

Autoren: Gibril, Bahareldin Ali Abdalla Chai, Xuewen Xu, Jiguo

Quelle: Biomolecules (2218-273X). Nov2025, Vol. 15 Issue 11, p1554. 24p.

Schlagwörter: *FUNCTIONAL genomics, *MUSCLE diseases, *TRANSCRIPTOMES, *RNA, *GENOME editing, *ANIMAL science, *MYOGENESIS

Establishment and Characterisation of Skin Cell Line of Schizothorax prenanti and Its Application Into Pathogen Infection.

Autoren: Shi, Yuhong Zhang, Qi Wang, Na et al.

Quelle: Journal of Fish Diseases. Nov2025, Vol. 48 Issue 11, p1-10. 10p.

Schlagwörter: *FUNCTIONAL genomics, *CELL lines, *SCHIZOTHORAX, *GENES, *GENE transfection, *RNA sequencing, *PATHOGENIC microorganisms

Geografische Kategorien: YANGTZE River Valley (China), CHINA

CRISPRi-seq in Haemophilus influenzae reveals genome-wide and medium-specific growth determinants.

Autoren: Gil-Campillo, Celia Mignolet, Johann Domínguez-San Pedro, Asier et al.

Quelle: PLoS Pathogens. 10/31/2025, Vol. 21 Issue 10, p1-22. 22p.

Schlagwörter: *FUNCTIONAL genomics, *HAEMOPHILUS influenzae, *PAN-genome, *BACTERIAL growth, *GENES, *CRISPRS, *GENE expression, *BIOINFORMATICS software

High‐Efficiency Regeneration and Transformation System in Nardostachys jatamansi for Functional Genomics and Bioactive Compounds Enrichment.

Autoren: Joshi, Shubham Nath, Jhilmil Bagri, Jayram et al.

Quelle: Plant, Cell & Environment. Oct2025, p1. 18p. 8 Illustrations.

Schlagwörter: *REGENERATION (Biology), *FUNCTIONAL genomics, *BIOACTIVE compounds, *HERBACEOUS plants, *VEGETATIVE propagation, *METABOLOMIC fingerprinting

Expansion of the functional genomics GRACE library reveals genes relevant for temperature-dependent fitness in Candida albicans.

Autoren: Fu, Ci Xiong, Emily H. Kupczok, Livia et al.

Quelle: PLoS Biology. 10/17/2025, Vol. 23 Issue 10, p1-34. 34p.

Schlagwörter: *CANDIDA albicans, *FUNCTIONAL genomics, *GENOMES, *MICROBIAL virulence, *HEAT adaptation, *BIOLOGICAL evolution, *GENE mapping, *PATHOGENIC fungi

Functional genomics and phenotypic characterization of PGP and biocontrol traits of rhizospheric Streptomyces spp. from Mexican milpa agroecosystem.

Autoren: Vazquez-Hernandez, Lizbeth De la Vega-Camarillo, Esau Hernández-García, Juan Alfredo et al.

Quelle: BMC Microbiology. 10/17/2025, Vol. 25 Issue 1, p1-20. 20p.

Schlagwörter: *FUNCTIONAL genomics, *STREPTOMYCES, *TRADITIONAL farming, *BIODIVERSITY conservation, *PHENOTYPES, *PLANT growth, *PLANT growth promoting substances, *PLANT defenses

A Biologically Informed and Efficient DNA Sequence Learner for Predicting Functional Genomics Events.

Autoren: Shiri, Mohammad Sun, Jiangwen

Quelle: Journal of Computational Biology. Oct2025, Vol. 32 Issue 10, p965-973. 9p.

Schlagwörter: *FUNCTIONAL genomics, *ARTIFICIAL neural networks, *FEATURE extraction, *FORECASTING, *PATTERN perception

Harnessing transposable elements for plant functional genomics and genome engineering.

Autoren: Tao, Xiao-Yuan Feng, Shou-Li Yuan, Lu et al.

Quelle: Trends in Plant Science. Oct2025, Vol. 30 Issue 10, p1130-1146. 17p.

Schlagwörter: *FUNCTIONAL genomics, *CROP improvement, *EPIGENETICS, *PLANT genomes, *GENETIC regulation, *MOBILE genetic elements, *BIOTECHNOLOGY, *GENOME editing

BTS: a scalable Bayesian Tissue Score for prioritizing GWAS variants and their functional contexts across >1000s of omics datasets Open Access.

Autoren: Kuksa, Pavel P Ionita, Matei Carter, Luke et al.

Quelle: Bioinformatics. Oct2025, Vol. 41 Issue 10, p1-14. 14p.

Schlagwörter: *GENOME-wide association studies, *FUNCTIONAL genomics, *CONTEXTUAL analysis, *TISSUE analysis, *GENETIC markers, *BAYESIAN analysis, *GENETIC variation, *CELL populations

RB-TnSeq elucidates dicarboxylic-acid-specific catabolism in β-proteobacteria for improved plastic monomer upcycling

Autoren: Pearson, Allison N Lynch, Julie M Ho, Cindy N et al.

Quelle: Applied and Environmental Microbiology. 91(10)

Schlagwörter: 31 Biological Sciences (for-2020), 3106 Industrial Biotechnology (for-2020), Prevention (rcdc), Genetics (rcdc), 12 Responsible Consumption and Production (sdg), Dicarboxylic Acids (mesh), Plastics (mesh), Betaproteobacteria (mesh), Bacterial Proteins (mesh), Fatty Acids (mesh), DNA Transposable Elements (mesh), functional genomics, dicarboxylic acids, plastics upcyling, Betaproteobacteria (mesh), Dicarboxylic Acids (mesh), Plastics (mesh), Fatty Acids (mesh), Bacterial Proteins (mesh), DNA Transposable Elements (mesh), dicarboxylic acids, functional genomics, plastics upcyling, Dicarboxylic Acids (mesh), Plastics (mesh), Betaproteobacteria (mesh), Bacterial Proteins (mesh), Fatty Acids (mesh), DNA Transposable Elements (mesh), Microbiology (science-metrix), 3107 Microbiology (for-2020), 3207 Medical microbiology (for-2020)

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/2k13p644
https://escholarship.org/content/qt2k13p644/qt2k13p644.pdf

Genetic associations on major depression: curation and functional analysis

Autoren: Pérez Granado, Judith

Weitere Verfasser: University/Department: Universitat Pompeu Fabra. Departament de Medicina i Ciències de la Vida

Thesis Advisors: Piñero, Janet, Furlong, Laura I.

Quelle: TDX (Tesis Doctorals en Xarxa)

Schlagwörter: Psychiatric disorders, Major depression, Functional genomics, Genome-wide association studies, Bioinformatics, Trastorns psiquiàtrics, Depressió major, Genòmica funcional, Estudis d’associació del genoma complet, Bioinformàtica

Time: 616.89

Dateibeschreibung: application/pdf

Zugangs-URL: http://hdl.handle.net/10803/687887

Translational control by differential expression of tRNAs

Autoren: Hernandez Alias, Xavier

Weitere Verfasser: University/Department: Universitat Pompeu Fabra. Departament de Medicina i Ciències de la Vida

Thesis Advisors: Serrano Pubull, Luis, Schaefer, Martin H.

Quelle: TDX (Tesis Doctorals en Xarxa)

Schlagwörter: Genòmica funcional, Traducció, Ús de codó, ARNt, Aprenentatge automàtic, Functional genomics, Translation, Codon usage, tRNA, Machine learning

Dateibeschreibung: application/pdf

Zugangs-URL: http://hdl.handle.net/10803/687788