Search Results - "ectopic recombination"

Blessing or curse: how the epigenetic resolution of host-transposable element conflicts shapes their evolutionary dynamics

Authors: Huang, Yuheng Lee, Yuh Chwen G

Source: Proceedings of the Royal Society B. 291(2020)

Subject Terms: 31 Biological Sciences (for-2020), 3105 Genetics (for-2020), Genetics (rcdc), DNA Transposable Elements (mesh), Evolution, Molecular (mesh), Epigenesis, Genetic (mesh), Biological Evolution (mesh), Eukaryota (mesh), transposable elements, epigenetic silencing, evolutionary dynamics, stable equilibrium, ectopic recombination, epistasis, DNA Transposable Elements (mesh), Evolution, Molecular (mesh), Epigenesis, Genetic (mesh), Eukaryota (mesh), Biological Evolution (mesh), 06 Biological Sciences (for), 07 Agricultural and Veterinary Sciences (for), 11 Medical and Health Sciences (for), 30 Agricultural, veterinary and food sciences (for-2020), 31 Biological sciences (for-2020), 41 Environmental sciences (for-2020)

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Access URL: https://escholarship.org/uc/item/0r554920
https://escholarship.org/content/qt0r554920/qt0r554920.pdf

Genome-wide maps of highly-similar intrachromosomal repeats that can mediate ectopic recombination in three human genome assemblies

Authors: Luis Fernandez-Luna Carlos Aguilar-Perez Christopher M. Grochowski et al.

Source: HGG Advances, Vol 6, Iss 2, Pp 100396- (2025)

Subject Terms: repeats, genomic rearrangements, structural variation, ectopic recombination, microhomology, segmental duplications, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666247724001362; https://doaj.org/toc/2666-2477

Access URL: https://doaj.org/article/8c5b66e3f40244ddb578dead08d77052

Synergistic epistasis of the deleterious effects of transposable elements

Authors: Lee, Yuh Chwen G

Source: Genetics. 220(2)

Subject Terms: 31 Biological Sciences (for-2020), 3105 Genetics (for-2020), Genetics (rcdc), Generic health relevance (hrcs-hc), Alleles (mesh), Animals (mesh), DNA Transposable Elements (mesh), Drosophila melanogaster (mesh), Epistasis, Genetic (mesh), Evolution, Molecular (mesh), Genetics, Population (mesh), Humans (mesh), transposable elements, epistasis, linkage disequilibrium, ectopic recombination, epigenetic effects, Drosophila, synergistic epistasis, Animals (mesh), Humans (mesh), Drosophila melanogaster (mesh), DNA Transposable Elements (mesh), Genetics, Population (mesh), Evolution, Molecular (mesh), Epistasis, Genetic (mesh), Alleles (mesh), 0604 Genetics (for), Developmental Biology (science-metrix), 3101 Biochemistry and cell biology (for-2020), 3105 Genetics (for-2020)

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Access URL: https://escholarship.org/uc/item/80w7m34q
https://escholarship.org/content/qt80w7m34q/qt80w7m34q.pdf

Accumulation of transposable elements in selfing populations of Arabidopsis lyrata supports the ectopic recombination model of transposon evolution

Source: New Phytologist, 2018 Jul 01. 219(2), 767-778.

Access URL: https://www.jstor.org/stable/90022605

Supplementary Texts from Blessing or curse: how the epigenetic resolution of host-transposable element conflicts shapes their evolutionary dynamics

Authors: Yuheng Huang Yuh Chwen G. Lee

Subject Terms: Evolutionary biology not elsewhere classified, Genetics, transposable elements, epigenetic silencing, evolutionary dynamics, stable equilibrium, ectopic recombination, epistasis

Availability: https://doi.org/10.6084/m9.figshare.25427999.v1
https://figshare.com/articles/journal_contribution/Supplementary_Texts_from_Blessing_or_curse_how_the_epigenetic_resolution_of_host-transposable_element_conflicts_shapes_their_evolutionary_dynamics/25427999

Supplementary Figures from Blessing or curse: how the epigenetic resolution of host-transposable element conflicts shapes their evolutionary dynamics

Authors: Yuheng Huang Yuh Chwen G. Lee

Subject Terms: Evolutionary biology not elsewhere classified, Genetics, transposable elements, epigenetic silencing, evolutionary dynamics, stable equilibrium, ectopic recombination, epistasis

Availability: https://doi.org/10.6084/m9.figshare.25427996.v1
https://figshare.com/articles/journal_contribution/Supplementary_Figures_from_Blessing_or_curse_how_the_epigenetic_resolution_of_host-transposable_element_conflicts_shapes_their_evolutionary_dynamics/25427996

Genome-wide maps of highly-similar intrachromosomal repeats that mediate ectopic recombination in three human genome assemblies

Authors: Luis Fernandez-Luna Carlos Aguilar-Perez Christopher M. Grochowski et al.

Source: HGG Adv
HGG Advances, Vol 6, Iss 2, Pp 100396-(2025)

Subject Terms: repeats, ectopic recombination, structural variation, Genetics, microhomology, QH426-470, genomic rearrangements, segmental duplications, Article, 3. Good health

Access URL: https://pubmed.ncbi.nlm.nih.gov/39722459
https://pubmed.ncbi.nlm.nih.gov/38352399
https://doaj.org/article/8c5b66e3f40244ddb578dead08d77052

Double-Strand Breaks Associated with Repetitive DNA Can Reshape the Genome

Authors: Argueso, Juan Lucas Westmoreland, James Mieczkowski, Piotr A. et al.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2008 Aug . 105(33), 11845-11850.

Access URL: https://www.jstor.org/stable/25463771

The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata

Authors: Lockton, Steven Gaut, Brandon S

Source: BMC Evolutionary Biology. 10

Subject Terms: drosophila-melanogaster, ectopic recombination, genome size, postglacial colonization, genetic diversity, y-chromosome, copy number, dynamics, dna, polymorphism

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Access URL: https://escholarship.org/uc/item/0gg2f58v
https://escholarship.org/content/qt0gg2f58v/qt0gg2f58v.pdf

What Can Long Terminal Repeats Tell Us About the Age of LTR Retrotransposons, Gene Conversion and Ectopic Recombination?

Authors: Pavel Jedlicka Matej Lexa Eduard Kejnovsky

Source: Frontiers in Plant Science, Vol 11 (2020)

Subject Terms: transposable elements, LTR retrotransposons, nesting, age estimation, gene conversion, ectopic recombination, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2020.00644/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/43311318381d4329befafeb9a9d28182

Long tandem arrays of Cassandra retroelements and their role in genome dynamics in plants

Authors: Kalendar, Ruslan Raskina, Olga Belyayev, Alexander et al.

Contributors: Kalendar, Ruslan Raskina, Olga Belyayev, Alexander et al.

Subject Terms: 5S RNA gene, AEGILOPS, BARLEY, CHROMOSOME, COPY NUMBER VARIATION, Cassandra TRIM, EVOLUTION, FAST PRIMER, RECOMBINATION, RETROTRANSPOSONS, TRANSPOSABLE ELEMENTS, VARIABILITY, ectopic recombination, genome evolution, long tandem array, retrotransposon, Biochemistry, cell and molecular biology, Genetics, developmental biology, physiology

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Relation: Kalendar , R , Raskina , O , Belyayev , A & Schulman , A 2020 , ' Long tandem arrays of Cassandra retroelements and their role in genome dynamics in plants ' , International Journal of Molecular Sciences , vol. 21 , no. 8 , 2931 . https://doi.org/10.3390/ijms21082931; http://hdl.handle.net/10138/316717; 000535565300273

Availability: http://hdl.handle.net/10138/316717

Chromosome Dynamics Regulating Genomic Dispersion and Alteration of Nucleolus Organizer Regions (NORs)

Authors: Hirohisa Hirai

Source: Cells, Vol 9, Iss 971, p 971 (2020)

Subject Terms: acrocentric chromosome association, subtelomeric association, chromosomal configuration, ectopic recombination, genomic dispersion, primates, Cytology, QH573-671

Relation: https://www.mdpi.com/2073-4409/9/4/971; https://doaj.org/toc/2073-4409; https://doaj.org/article/7d640ba876124a889b6c50c2cda387ad

Availability: https://doi.org/10.3390/cells9040971
https://doaj.org/article/7d640ba876124a889b6c50c2cda387ad

Long Tandem Arrays of Cassandra Retroelements and Their Role in Genome Dynamics in Plants

Authors: Ruslan Kalendar Olga Raskina Alexander Belyayev et al.

Source: International Journal of Molecular Sciences, Vol 21, Iss 2931, p 2931 (2020)

Subject Terms: retrotransposon, Cassandra TRIM, 5S RNA gene, long tandem array, ectopic recombination, genome evolution, Biology (General), QH301-705.5, Chemistry, QD1-999

Relation: https://www.mdpi.com/1422-0067/21/8/2931; https://doaj.org/toc/1661-6596; https://doaj.org/toc/1422-0067; https://doaj.org/article/58b8954fab2c40069a9b2656ad0bb856

Availability: https://doi.org/10.3390/ijms21082931
https://doaj.org/article/58b8954fab2c40069a9b2656ad0bb856

Supernumerary B Chromosomes and Plant Genome Changes: A Snapshot of Wild Populations of Aegilops speltoides Tausch ( Poaceae , Triticeae)

Authors: Imad Shams Olga Raskina

Source: International Journal of Molecular Sciences, Vol 21, Iss 3768, p 3768 (2020)

Subject Terms: Aegilops speltoides, B chromosome, ectopic recombination, genome evolution, LINE, retrotransposon copy numbers, Biology (General), QH301-705.5, Chemistry, QD1-999

Relation: https://www.mdpi.com/1422-0067/21/11/3768; https://doaj.org/toc/1661-6596; https://doaj.org/toc/1422-0067; https://doaj.org/article/b6717f1e55a4418289fd02e0b4fe1fdc

Availability: https://doi.org/10.3390/ijms21113768
https://doaj.org/article/b6717f1e55a4418289fd02e0b4fe1fdc

Heat stress-induced transposon activation correlates with 3D chromatin organization rearrangement in Arabidopsis

Authors: Landi Sun Yuqing Jing Xinyu Liu et al.

Source: Nat Commun
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)

Subject Terms: 0301 basic medicine, Science, Genome Evolution and Polyploidy in Plants, Karyotype, Molecular Conformation, Arabidopsis, Ectopic recombination, Plant Science, Chromosome, Gene, Article, Chromosomes, Plant, Transposable element, Agricultural and Biological Sciences, 03 medical and health sciences, Regulation of Chromatin Structure and Function, Biochemistry, Genetics and Molecular Biology, Heterochromatin, Genetics, Chromosomal rearrangement, Gene Silencing, Molecular Biology, Biology, Chromosome conformation capture, 0303 health sciences, Genome, Genetic recombination, Transposable Elements, Mutant, Life Sciences, Chromatin Assembly and Disassembly, Chromatin, Recombination, Genome evolution, FOS: Biological sciences, Viral RNA Silencing and Plant Immunity, DNA Transposable Elements, Epigenetics, Transcription factor, Genome, Plant, Heat-Shock Response, Genome-Wide Association Study, Enhancer

Access URL: https://www.nature.com/articles/s41467-020-15809-5.pdf
https://pubmed.ncbi.nlm.nih.gov/32312999
https://doaj.org/article/ede7866cd2424f748aa72f2386b2a87f
https://www.nature.com/articles/s41467-020-15809-5.pdf
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7170881
https://www.nature.com/articles/s41467-020-15809-5
https://europepmc.org/article/MED/32312999
https://ui.adsabs.harvard.edu/abs/2020NatCo..11.1886S/abstract
https://pubmed.ncbi.nlm.nih.gov/32312999/

DataSheet_1_Phylogenomics and chromosome mapping show that ectopic recombination of subtelomeres is critical for antigenic diversity and has a complex evolutionary history in Plasmodium parasites.zip

Authors: Carolina Martínez-Eraso Heiber Cárdenas Mario A. Cerón-Romero

Subject Terms: Evolutionary Biology, Ecology, Invasive Species Ecology, Landscape Ecology, Conservation and Biodiversity, Behavioural Ecology, Community Ecology (excl. Invasive Species Ecology), Ecological Physiology, Freshwater Ecology, Marine and Estuarine Ecology (incl. Marine Ichthyology), Population Ecology, Terrestrial Ecology, antigenic genes, chromosome maps, gene conservation profiles, subtelomeres, Plasmodium, species tree, ectopic recombination, antigenic diversity

Relation: https://figshare.com/articles/dataset/DataSheet_1_Phylogenomics_and_chromosome_mapping_show_that_ectopic_recombination_of_subtelomeres_is_critical_for_antigenic_diversity_and_has_a_complex_evolutionary_history_in_Plasmodium_parasites_zip/25058945

Availability: https://doi.org/10.3389/fevo.2023.1177350.s001
https://figshare.com/articles/dataset/DataSheet_1_Phylogenomics_and_chromosome_mapping_show_that_ectopic_recombination_of_subtelomeres_is_critical_for_antigenic_diversity_and_has_a_complex_evolutionary_history_in_Plasmodium_parasites_zip/25058945

Image_2_Phylogenomics and chromosome mapping show that ectopic recombination of subtelomeres is critical for antigenic diversity and has a complex evolutionary history in Plasmodium parasites.pdf

Authors: Carolina Martínez-Eraso Heiber Cárdenas Mario A. Cerón-Romero

Subject Terms: Evolutionary Biology, Ecology, Invasive Species Ecology, Landscape Ecology, Conservation and Biodiversity, Behavioural Ecology, Community Ecology (excl. Invasive Species Ecology), Ecological Physiology, Freshwater Ecology, Marine and Estuarine Ecology (incl. Marine Ichthyology), Population Ecology, Terrestrial Ecology, antigenic genes, chromosome maps, gene conservation profiles, subtelomeres, Plasmodium, species tree, ectopic recombination, antigenic diversity

Relation: https://figshare.com/articles/figure/Image_2_Phylogenomics_and_chromosome_mapping_show_that_ectopic_recombination_of_subtelomeres_is_critical_for_antigenic_diversity_and_has_a_complex_evolutionary_history_in_Plasmodium_parasites_pdf/25058951

Availability: https://doi.org/10.3389/fevo.2023.1177350.s003
https://figshare.com/articles/figure/Image_2_Phylogenomics_and_chromosome_mapping_show_that_ectopic_recombination_of_subtelomeres_is_critical_for_antigenic_diversity_and_has_a_complex_evolutionary_history_in_Plasmodium_parasites_pdf/25058951

Table_1_Phylogenomics and chromosome mapping show that ectopic recombination of subtelomeres is critical for antigenic diversity and has a complex evolutionary history in Plasmodium parasites.docx

Authors: Carolina Martínez-Eraso Heiber Cárdenas Mario A. Cerón-Romero

Subject Terms: Evolutionary Biology, Ecology, Invasive Species Ecology, Landscape Ecology, Conservation and Biodiversity, Behavioural Ecology, Community Ecology (excl. Invasive Species Ecology), Ecological Physiology, Freshwater Ecology, Marine and Estuarine Ecology (incl. Marine Ichthyology), Population Ecology, Terrestrial Ecology, antigenic genes, chromosome maps, gene conservation profiles, subtelomeres, Plasmodium, species tree, ectopic recombination, antigenic diversity

Relation: https://figshare.com/articles/dataset/Table_1_Phylogenomics_and_chromosome_mapping_show_that_ectopic_recombination_of_subtelomeres_is_critical_for_antigenic_diversity_and_has_a_complex_evolutionary_history_in_Plasmodium_parasites_docx/25058954

Availability: https://doi.org/10.3389/fevo.2023.1177350.s004
https://figshare.com/articles/dataset/Table_1_Phylogenomics_and_chromosome_mapping_show_that_ectopic_recombination_of_subtelomeres_is_critical_for_antigenic_diversity_and_has_a_complex_evolutionary_history_in_Plasmodium_parasites_docx/25058954

The Repetitive DNA Composition in the Natural Pesticide Producer Tanacetum cinerariifolium: Interindividual Variation of Subtelomeric Tandem Repeats: Interindividual Variation of Subtelomeric Tandem Repeats

Authors: Mlinarec, Jelena Skuhala, Ana Jurković, Adela et al.

Source: Front Plant Sci
Frontiers in Plant Science, Vol 10 (2019)

Subject Terms: 0301 basic medicine, FREQUENT ECTOPIC RECOMBINATION, ASTERACEAE, Evolution, satellite, RIBOSOMAL-RNA GENES, TELOMERE, Plant Science, L-type rDNA arrangement, SEQUENCE, SB1-1110, Tanacetum cinerariifolium (Dalmatian pyrethrum), 03 medical and health sciences, Interstitial telomeric repeats, FISH, evolution, meiosis, interstitial telomeric repeats, Subtelomere, 0303 health sciences, subtelomere, SATELLITE DNA, Plant culture, IN-SITU HYBRIDIZATION, EVOLUTION, Meiosis, HOT-SPOTS, Satellite, 106012 Evolutionsforschung, CHROMOSOME ENDS, 106012 Evolutionary research

File Description: application/pdf

Access URL: https://www.frontiersin.org/articles/10.3389/fpls.2019.00613/pdf
https://pubmed.ncbi.nlm.nih.gov/31156676
https://www.bib.irb.hr/1013663
https://doi.org/10.3389/fpls.2019.00613
https://doaj.org/article/3b4ecab0ea5247fcbad92fa2995c2247
https://ucrisportal.univie.ac.at/de/publications/a3c40e0b-af14-4e64-85cb-dfe68696809c
https://doi.org/10.3389/fpls.2019.00613
https://www.frontiersin.org/articles/10.3389/fpls.2019.00613/full
https://doi.org/10.3389/fpls.2019.00613
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC6532368
https://www.bib.irb.hr/1013663
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6532368
https://www.frontiersin.org/article/10.3389/fpls.2019.00613/full
https://europepmc.org/article/MED/31156676
https://www.frontiersin.org/articles/10.3389/fpls.2019.00613/full
https://phaidra.univie.ac.at/o:1146446
https://hdl.handle.net/11353/10.1146446
https://doi.org/10.3389/fpls.2019.00613

Robertsonian fusion triggers recombination suppression on sex chromosomes in Coleonyx geckos

Authors: Artem Lisachov Katerina V. Tishakova Svetlana A. Romanenko et al.

Subject Terms: Genetic recombination, Chromosomal inversion, Centromere, Karyotype, Ectopic recombination, Life Sciences, Evolutionary biology, Chromosome, Gene, Recombination, Agricultural and Biological Sciences, Evolutionary Ecology of Animal Behavior and Traits, Meiosis, X Chromosome Inactivation, FOS: Biological sciences, Biochemistry, Genetics and Molecular Biology, Autosome, Genetics, Impact of Pollinator Decline on Ecosystems and Agriculture, Sex Determination and Differentiation in Organisms, Synaptonemal complex, Biology, Ecology, Evolution, Behavior and Systematics