Suchergebnisse - "delay stochastic simulation algorithm"

Applications of the Delay Stochastic Simulation Algorithm (DSSA) in Mathematical Epidemiology

Autoren: Bai, Fan

Quelle: Mathematics, Vol 10, Iss 20, p 3759 (2022)
Mathematics; Volume 10; Issue 20; Pages: 3759

Schlagwörter: delay differential equations, stochastic epidemic models with delays, probability of a minor epidemic outbreak, Markov chain, branching process, numerical methods, delay stochastic simulation algorithm, QA1-939, 0101 mathematics, 01 natural sciences, Mathematics

Dateibeschreibung: application/pdf

Zugangs-URL: https://doaj.org/article/94624cdcf4ff4a99bbc5ca1cd8a77062

Stochastic Modelling and Simulation of Coupled Autoregulated Oscillators in a Multicellular Environment: The her1/her7 Genes

Autoren: Leier, Andre Burrage, Kevin Burrage, Pamela

Quelle: Lecture Notes in Computer Science ISBN: 9783540725831

Schlagwörter: delay stochastic simulation algorithm, coupled regulatory systems, multiscale modelling, multicellular environment, 3. Good health

Zugangs-URL: https://link.springer.com/content/pdf/10.1007%2F978-3-540-72584-8_103.pdf
https://espace.library.uq.edu.au/view/UQ:163284
https://link.springer.com/chapter/10.1007/978-3-540-72584-8_103
https://dblp.uni-trier.de/db/conf/iccS/iccS2007-1.html#LeierBB07
https://rd.springer.com/chapter/10.1007/978-3-540-72584-8_103
https://link.springer.com/content/pdf/10.1007%2F978-3-540-72584-8_103.pdf
https://core.ac.uk/display/10908327

Stochastic delay models for molecular clocks and somite formation

Autoren: Burrage, Kevin Burrage, Pamela Leier, Andre et al.

Weitere Verfasser: Burrage, Kevin Burrage, Pamela Leier, Andre et al.

Quelle: SPIE Proceedings. 6802:68020Z

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, delay stochastic simulation algorithm, coupled regulatory systems, Binomial Tau-leap algorithm, multiscale modeling, multicellular environment

Zugangs-URL: https://espace.library.uq.edu.au/view/UQ:315690/UQ315690_OA.pdf
https://espace.library.uq.edu.au/view/UQ:315690/UQ315690_OA.pdf
https://proceedings.spiedigitallibrary.org/proceeding.aspx?articleid=810493
https://www.spiedigitallibrary.org/conference-proceedings-of-spie/6802/1/Stochastic-delay-models-for-molecular-clocks-and-somite-formation/10.1117/12.776148.full
http://ui.adsabs.harvard.edu/abs/2007SPIE.6802E..0ZB/abstract
http://eprints.qut.edu.au/80673/
https://espace.library.uq.edu.au/view/UQ:315690

Stochastic delay models for molecular clocks and somite formation

Autoren: Burrage, Kevin Burrage, Pamela Leier, Andre et al.

Weitere Verfasser: Burrage, Kevin Burrage, Pamela Leier, Andre et al.

Schlagwörter: Binomial r leap algorithm, Coupled regulatory systems, Delay stochastic simulation algorithm, Multicellular environment, Multiscale modeling, 2208 Electrical and Electronic Engineering, 3104 Condensed Matter Physics

Verfügbarkeit: https://espace.library.uq.edu.au/view/UQ:315690/UQ315690_OA.pdf
https://espace.library.uq.edu.au/view/UQ:315690

Scholastic modelling and simulation of coupled autoregulated oscillators in a multicellular environment: the her1/her7 genes

Autoren: Leier, A. Burrage, K. Burrage, P. M.

Schlagwörter: delay stochastic simulation algorithm, coupled regulatory systems, multicellular environment, multiscale modelling, 010202 Biological Mathematics

Verfügbarkeit: https://espace.library.uq.edu.au/view/UQ:163284

Reduction of chemical reaction networks through delay distributions.

Autoren: Barrio, Manuel Leier, André Marquez-Lago, Tatiana T.

Quelle: Journal of Chemical Physics; Mar2013, Vol. 138 Issue 10, p104114, 13p, 1 Diagram, 1 Chart, 9 Graphs

Schlagwörter: CHEMICAL reactions, COMPUTATIONAL biology, SIMULATION methods & models, STOCHASTIC processes, UNIMOLECULAR reactions, SAMPLE size (Statistics), ALGORITHMS

Improved delay-leaping simulation algorithm for biochemical reaction systems with delays.

Autoren: Yi, Na Zhuang, Gang Da, Liang et al.

Quelle: Journal of Chemical Physics; 4/14/2012, Vol. 136 Issue 14, p144108, 4p

Schlagwörter: SIMULATION methods & models, ALGORITHMS, BIOCHEMISTRY, STOCHASTIC analysis, NUMERICAL analysis, COMPARATIVE studies

A partial-propensity formulation of the stochastic simulation algorithm for chemical reaction networks with delays.

Autoren: Ramaswamy, Rajesh Sbalzarini, Ivo F.

Quelle: Journal of Chemical Physics; 1/7/2011, Vol. 134 Issue 1, p014106, 8p

Schlagwörter: ALGORITHMS, CHEMICAL reactions, SIMULATION methods & models, GENE expression, TIME delay systems, CHEMICAL kinetics, STOCHASTIC analysis

Generalized binomial τ-leap method for biochemical kinetics incorporating both delay and intrinsic noise.

Autoren: Leier, André Marquez-Lago, Tatiana T. Burrage, Kevin

Quelle: Journal of Chemical Physics; 5/28/2008, Vol. 128 Issue 20, p205107, 14p, 3 Diagrams, 11 Charts, 15 Graphs

Schlagwörter: BIOCHEMISTRY, CHEMICAL kinetics, CYTOLOGY, CELL communication, CHEMICAL reactions, CHEMICAL processes

DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia.

Autoren: Fu, Xiaoming Zhou, Xinyi Gu, Dongyang et al.

Quelle: Bioinformatics; Sep2022, Vol. 38 Issue 17, p4243-4245, 3p

Schlagwörter: SIMULATION methods & models, SYSTEMS biology, SOURCE code, SYSTEM dynamics

Stochastic fluctuations as a driving force to dissipative non-equilibrium states.

Autoren: Chanu, Athokpam Langlen Bhadana, Jyoti Singh, R K Brojen

Quelle: Journal of Physics A: Mathematical & Theoretical; 10/23/2020, Vol. 53 Issue 42, p1-37, 37p

Schlagwörter: FLUCTUATIONS (Physics), AUTOCATALYSIS, ALGORITHMS, STOCHASTIC systems, GAUSSIAN distribution, DYNAMICAL systems

Transcriptional processes: Models and inference.

Autoren: Shetty, Keerthi S. B, Annappa

Quelle: Journal of Bioinformatics & Computational Biology; Oct2018, Vol. 16 Issue 5, pN.PAG-N.PAG, 17p

Schlagwörter: BIOCHEMISTRY, MONTE Carlo method, STOCHASTIC processes, TIME series analysis, GLUTAMINASES

Multi-scale approach for simulating time-delay biochemical reaction systems.

Autoren: Yuanling Niu Burrage, Kevin Chengjian Zhang

Quelle: IET Systems Biology (Wiley-Blackwell); 2015, Vol. 9 Issue 1, p31-38, 8p

Schlagwörter: MULTISCALE modeling, STOCHASTIC analysis, SIMULATION methods & models, NUMERICAL analysis, ACCURACY, COMPUTATIONAL complexity

A Practicable Method of Tuning the Noise Intensity at Protein Level.

Autoren: Lo, Shih-Chiang You, Chao-Xuan Shu, Che-Chi

Quelle: Journal of Computational Biology. Sep2020, Vol. 27 Issue 9, p1452-1460. 9p.

Schlagwörter: *NOISE, *SYNTHETIC biology, *STOCHASTIC resonance, *PROTEINS, *ALGORITHMS

Analytic delay distributions for a family of gene transcription models.

Autoren: Hosseini, S. Hossein Roussel, Marc R.

Quelle: Mathematical Biosciences & Engineering; 2024, Vol. 21 Issue 6, p1-38, 38p

Uniformization techniques for stochastic simulation of chemical reaction networks.

Autoren: Beentjes, Casper H. L. Baker, Ruth E.

Quelle: Journal of Chemical Physics; 4/21/2019, Vol. 150 Issue 15, pN.PAG-N.PAG, 16p, 3 Diagrams, 2 Charts, 3 Graphs

Schlagwörter: STOCHASTIC integrals, CHEMICAL reactions, MARKOV processes, SIMULATION methods & models, WORK

Delay chemical master equation: direct and closed-form solutions.

Autoren: Leier, Andre Marquez-Lago, Tatiana T.

Quelle: Proceedings of the Royal Society A: Mathematical, Physical & Engineering Sciences. 7/8/2015, Vol. 471 Issue 2179, following p1-15. 17p.

Schlagwörter: *CHEMICAL equations, *STOCHASTIC analysis, *SIMULATION methods & models, *NUMERICAL solutions for Markov processes, *DISCRETE systems

Reduction of chemical reaction networks through delay distributions

Autoren: Barrio Solórzano, Manuel

Index Begriffe: info:eu-repo/semantics/article, info:eu-repo/semantics/publishedVersion

URL: https://worldcat.org/search?q=on:ESUDE+http://uvadoc.uva.es/oai/request+DCG_ENTIRE_REPOSITORY+CNTCOLL
https://pubs.aip.org/aip/jcp/article/138/10/104114/192894/Reduction-of-chemical-reaction-networks-through
https://pubs.aip.org/aip/jcp/article/138/10/104114/192894/Reduction-of-chemical-reaction-networks-through

Bio-PEPAd: A non-Markovian extension of Bio-PEPA

Autoren: Caravagna, G Hillston, J CARAVAGNA, GIULIO et al.

Index Begriffe: Bio-PEPA, DDE, Delay-as-duration, DSSA, GSMP, Non-Markovian process algebra, Theoretical Computer Science, Computer Science (all), info:eu-repo/semantics/article

URL: http://hdl.handle.net/10281/60684
info:eu-repo/semantics/altIdentifier/wos/WOS:000300534900004
volume:419
firstpage:26
lastpage:49
numberofpages:24
journal:THEORETICAL COMPUTER SCIENCE

Probability distributed time delays: integrating spatial effects into temporal models

Autoren: Marquez-Lago, Tatiana Leier, Andre Burrage, Kevin

Quelle: BMC Systems Biology

Index Begriffe: Contribution to Journal

URL: https://eprints.qut.edu.au/42737/1/__qut.edu.au_Documents_StaffHome_StaffGroupR%24_rogersjm_Desktop_42737.pdf
https://eprints.qut.edu.au/42737/1/__qut.edu.au_Documents_StaffHome_StaffGroupR%24_rogersjm_Desktop_42737.pdf
doi:10.1186/1752-0509-4-19
Marquez-Lago, Tatiana, Leier, Andre, & Burrage, Kevin (2010) Probability distributed time delays: integrating spatial effects into temporal models. BMC Systems Biology, 4, pp. 1-16.