Suchergebnisse - "cryoEM"

Standards for MicroED

Autoren: Unge, Johan Nannenga, Brent L. Oliver, Allen G. et al.

Quelle: Acta Crystallographica Section C: Structural Chemistry. 81(Pt 7):376-390

Schlagwörter: best practices, cryoEM, electron diffraction, Gold standards, MicroED, quality indicator

Dateibeschreibung: electronic

Zugangs-URL: https://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-242309
https://doi.org/10.1107/S2053229625004875

Structure, identification and characterization of the RibD-enolase complex in Francisella

Autoren: Liu, Xiaoyu Clemens, Daniel L Lee, Bai-Yu et al.

Quelle: bioRxiv

Schlagwörter: 3101 Biochemistry and Cell Biology (for-2020), 34 Chemical Sciences (for-2020), 31 Biological Sciences (for-2020), Infectious Diseases (rcdc), Emerging Infectious Diseases (rcdc), Rare Diseases (rcdc), Biodefense (rcdc), Orphan Drug (rcdc), Vector-Borne Diseases (rcdc), 2.2 Factors relating to the physical environment (hrcs-rac), 1.1 Normal biological development and functioning (hrcs-rac), 3 Good Health and Well Being (sdg), Francisella, RibD-enolase, cryoEM, enzyme complex

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/0s86f9pn
https://escholarship.org/content/qt0s86f9pn/qt0s86f9pn.pdf

CryoEM structure and small-angle X-ray scattering analyses of porcine retinol-binding protein 3.

Autoren: Kaushik, Vineeta Gessa, Luca Kumar, Nelam et al.

Quelle: Open Biology. 15(1)

Schlagwörter: RBP3, SAXS, conformational changes, cryoEM structure, molecular docking, Animals, Scattering, Small Angle, Swine, Retinol-Binding Proteins, Cryoelectron Microscopy, Molecular Docking Simulation, Protein Conformation, X-Ray Diffraction, Protein Binding, Models, Molecular, Vitamin A, Eye Proteins

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/22w696fx
https://escholarship.org/content/qt22w696fx/qt22w696fx.pdf

Protein electrostatic potential Fourier maps calculated using the transferable aspherical atom model and the independent atom model across resolutions

Autoren: Marta Kulik Paulina Maria Dominiak

Quelle: IUCrJ, Vol 12, Iss 6, Pp 616-632 (2025)

Schlagwörter: 3d electron diffraction, 3d ed, microcrystal electron diffraction, microed, 3d reconstruction and image processing, single-particle cryoem, electron diffraction, multipolar scattering factors, electrostatic potential maps, resolution, transferable aspherical atom model (taam), micro-electron diffraction, cryogenic electron microscopy, macromolecular structure, proteins, quantum crystallography, Crystallography, QD901-999

Dateibeschreibung: electronic resource

Relation: https://journals.iucr.org/paper?S2052252525008383; https://doaj.org/toc/2052-2525

Zugangs-URL: https://doaj.org/article/8f2eb29f77854cdfba60ad6b34ce86d2

InstaMap: instant-NGP for cryo-EM density maps

Autoren: Geoffrey Woollard Wenda Zhou Erik H. Thiede et al.

Quelle: Acta Crystallogr D Struct Biol

Schlagwörter: Imaging, Three-Dimensional, Image Processing for Cryoem, Cryoelectron Microscopy, Image Processing, Computer-Assisted, Algorithms

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/40135651

Comprehensive encoding of conformational and compositional protein structural ensembles through the mmCIF data structure

Autoren: Wankowicz, Stephanie A Fraser, James S

Quelle: IUCrJ. 11(Pt 4)

Schlagwörter: Physical Sciences, Chemical Sciences, Physical Chemistry, Condensed Matter Physics, Bioengineering, Networking and Information Technology R&D (NITRD), 1.1 Normal biological development and functioning, 1.4 Methodologies and measurements, Protein Conformation, Crystallography, X-Ray, Proteins, Databases, Protein, Cryoelectron Microscopy, Models, Molecular, Humans, biomolecules, macromolecular ensembles, ensemble-function predictions, mmCIF, cryoEM., cryoEM, ensemble–function predictions, Atomic, Molecular, Nuclear, Particle and Plasma Physics, Physical Chemistry (incl. Structural), Physical chemistry, Condensed matter physics

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/92k7h065
https://escholarship.org/content/qt92k7h065/qt92k7h065.pdf

Accounting for electron-beam-induced warping of molecular nanocrystals in MicroED structure determination

Autoren: Niko Vlahakis Arden Clauss Jose A. Rodriguez

Quelle: IUCrJ
IUCrJ, Vol 12, Iss 2, Pp 223-238 (2025)

Schlagwörter: structural studies of microcrystals, Crystallography, beam-induced motion, Research Papers, cryoem, structural studies of nanocrystals, nanocrystals, 3ded, microed, QD901-999, radiation damage, 3d electron diffraction, tem, microcrystal electron diffraction

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39927752
https://doaj.org/article/00546c9d367a4e2eb5b4d260729492d4

TomoCPT: a generalizable model for 3D particle detection and localization in cryo-electron tomograms

Autoren: Pranav N. M. Shah Ruben Sanchez-Garcia David I. Stuart

Quelle: Acta Crystallogr D Struct Biol

Schlagwörter: Electron Microscope Tomography, Imaging, Three-Dimensional, SARS-CoV-2, Image Processing for Cryoem, Cryoelectron Microscopy, Apoferritins, Spike Glycoprotein, Coronavirus, Humans, COVID-19

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39902808

Structure of an ex vivo Drosophila TOM complex determined by single-particle cryoEM

Autoren: Agalya Periasamy Pamela Ornelas Thomas Bausewein et al.

Quelle: IUCrJ
IUCrJ, Vol 12, Iss 1, Pp 49-61 (2025)

Schlagwörter: Models, Molecular, 0301 basic medicine, tom40, Crystallography, Protein Conformation, tom complex, Cryoelectron Microscopy, membrane proteins, mitochondrial translocases, drosophila melanogaster, Research Papers, 01 natural sciences, 0104 chemical sciences, 03 medical and health sciences, Drosophila melanogaster, QD901-999, Mitochondrial Precursor Protein Import Complex Proteins, Animals, Humans, Drosophila Proteins, single-particle cryoem, macromolecular machines

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39575538
https://doaj.org/article/c1a1deb4707c4c9e9d7d10c37b36854e

Imaging and reconstruction of membrane proteins with cryoEM

Autoren: Zhang, Qingyang Mim, Carsten, Universitetslektor Larsson, Peter, Professor

Weitere Verfasser: Zhang, Qingyang Mim, Carsten, Universitetslektor Larsson, Peter, Professor

Quelle: TRITA-CBH-FOU.

Schlagwörter: Membrane protein, ion channel, transporter, pannexin 1 (PANX1), sodium coupled monocarboxylate transporter 1 (SMCT1), cryogenic electron microscopy (cryoEM), single particle analysis (SPA), Membranprotein, jonkanal, transportör, natriumkopplad monokarboxylattransportör 1 (SMCT1), kryoelektronmikroskopi (cryoEM), singelpartikelanalys (SPA), Teknik och hälsa, Technology and Health

Dateibeschreibung: electronic

Zugangs-URL: https://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-373107
https://kth.diva-portal.org/smash/get/diva2:2014692/FULLTEXT01.pdf

Plant supercomplex I + III2 structure and function: implications for the growing field.

Autoren: Maldonado, Maria

Quelle: Biochemical Society Transactions. 52(4)

Schlagwörter: cryoEM, mitochondrial respiration, supercomplexes, Arabidopsis, Electron Transport Complex I, Electron Transport Complex III, Mitochondria, Plants, Fabaceae

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/3s81m2hj
https://escholarship.org/content/qt3s81m2hj/qt3s81m2hj.pdf

Structural basis of inhibition of human NaV1.8 by the tarantula venom peptide Protoxin-I

Autoren: Neumann, Bryan McCarthy, Stephen Gonen, Shane

Schlagwörter: Medical Physiology, Biomedical and Clinical Sciences, Physical Sciences, 1.1 Normal biological development and functioning, NaV1.8, Protoxin-I, cryoEM, graphene, voltage-gated sodium channel

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/322108ks
https://escholarship.org/content/qt322108ks/qt322108ks.pdf

The future of integrated structural biology

Autoren: Schwalbe, Harald Audergon, Pauline Haley, Natalie et al.

Weitere Verfasser: Schwalbe, Harald Audergon, Pauline Haley, Natalie et al.

Quelle: Digital.CSIC. Repositorio Institucional del CSIC
Consejo Superior de Investigaciones Científicas (CSIC)
Schwalbe, H, Audergon, P, Haley, N, Amaro, C A, Agirre, J, Baldus, M, Banci, L, Baumeister, W, Blackledge, M, Carazo, J M, Carugo, K D, Celie, P, Felli, I, Hart, D J, Hauß, T, Lehtiö, L, Lindorff-Larsen, K, Márquez, J, Matagne, A, Pierattelli, R, Rosato, A, Sobott, F, Sreeramulu, S, Steyaert, J, Sussman, J L, Trantirek, L, Weiss, M S & Wilmanns, M 2024, ' The future of integrated structural biology ', Structure (London, England : 1993), vol. 32, no. 10, pp. 1563-1580 . https://doi.org/10.1016/j.str.2024.08.014
Structure

Schlagwörter: MESH: Humans, [SDV]Life Sciences [q-bio], Proteins, Biochimie, biophysique & biologie moléculaire, Life sciences, [SDV] Life Sciences [q-bio], Europe, structural biology, integrative methods, NMR, x-ray, cryoEM, Sciences du vivant, Humans, MESH: Proteins, MESH: Europe, Biochemistry, biophysics & molecular biology

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39293444
https://api.elsevier.com/content/abstract/scopus_id/85206018289
http://hdl.handle.net/10261/374603
https://hdl.handle.net/2268/322488
https://doi.org/10.1016/j.str.2024.08.014
https://curis.ku.dk/ws/files/410096814/1_s2.0_S0969212624003319_main.pdf
https://hdl.handle.net/2158/1387294
https://www.cell.com/structure/fulltext/S0969-2126(24)00331-9?_returnURL=https://linkinghub.elsevier.com/retrieve/pii/S0969212624003319?showall=true
https://doi.org/10.1016/j.str.2024.08.014

Structural insights into ribosome anti-association mechanism in archaea

Autoren: Hassan Ahmed Adel Ibrahim Hassona Pinkas Matyáš Ito Kosuke et al.

Quelle: Ribosome meeting 2025

Schlagwörter: ribosomal subunit, dimerization, cryoEM, structure

Zugangs-URL: https://is.muni.cz/publication/2509359

Structural basis of ribosome maturation and translational recovery in E. coli lacking RimM maturation factor

Autoren: Hassan Ahmed Adel Ibrahim Hassona Nakano Yuko Blaha Gregor et al.

Quelle: Ribosome meeting 2025

Schlagwörter: ribosomal subunit, biogenesis, cryoEM, structure

Zugangs-URL: https://is.muni.cz/publication/2509358

The structure of the bacterial outer membrane transporter FusA enabled by addition of the native lipid lipopolysaccharide

Autoren: Jonathan M. Machin Khedidja Mosbahi Dheeraj Prakaash et al.

Quelle: Journal of Structural Biology: X, Vol 12, Iss , Pp 100141- (2025)

Schlagwörter: Structural biology, cryoEM, Membrane protein, Bacterial membrane protein, Transporter, Ferredoxin, Biology (General), QH301-705.5

Dateibeschreibung: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2590152425000224; https://doaj.org/toc/2590-1524

Zugangs-URL: https://doaj.org/article/b925c47f236b43d0a7afe0edc272a00f

Editorial: Breakthroughs in Cryo-EM with machine learning and artificial intelligence

Autoren: Edward T. Eng Sonya M. Hanson Ruben Sanchez-Garcia

Quelle: Frontiers in Molecular Biosciences, Vol 12 (2025)

Schlagwörter: CryoEM, CryoET, machine learning, artificial intelligence, deep learning, computer vision, Biology (General), QH301-705.5

Dateibeschreibung: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmolb.2025.1739481/full; https://doaj.org/toc/2296-889X

Zugangs-URL: https://doaj.org/article/e1c4718597f34e2fb8b3a8fd68b6a455

Compositional Analysis of Complex Mixtures using Automatic MicroED Data Collection.

Autoren: Unge, Johan Lin, Jieye Weaver, Sara et al.

Quelle: Advanced Science. 11(23)

Schlagwörter: CryoEM, MicroED, analytical, automation, composition, high‐throughput, microcrystal electron diffraction

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/1hj8z0df
https://escholarship.org/content/qt1hj8z0df/qt1hj8z0df.pdf

Mitigating the Blurring Effect of CryoEM Averaging on a Flexible and Highly Symmetric Protein Complex through Sub-Particle Reconstruction

Autoren: Suder, Diana S Gonen, Shane

Quelle: International Journal of Molecular Sciences. 25(11)

Schlagwörter: Biochemistry and Cell Biology, Chemical Sciences, Biological Sciences, Bioengineering, 1.1 Normal biological development and functioning, Generic health relevance, Cryoelectron Microscopy, Models, Molecular, Proteins, Multiprotein Complexes, Image Processing, Computer-Assisted, Protein Conformation, CryoEM, cage, flexibility, protein design, scaffold, single-particle, sub-particle, Other Chemical Sciences, Genetics, Other Biological Sciences, Chemical Physics, Biochemistry and cell biology, Microbiology, Medicinal and biomolecular chemistry

Dateibeschreibung: application/pdf

Zugangs-URL: https://escholarship.org/uc/item/03k1462z
https://escholarship.org/content/qt03k1462z/qt03k1462z.pdf

SAR Analysis of Novel Coxsackie virus A9 Capsid Binders

Autoren: Tammaro, Chiara Plavec, Zlatka Myllymäki, Laura et al.

Quelle: Journal of Medicinal Chemistry. 67:17144-17161

Schlagwörter: Models, Molecular, Structure-Activity Relationship, Capsid, Chlorocebus aethiops, Humans, Capsid Proteins, Antiviral Agents, antivirals, drug design, Coxsackievirus A9, cryoEM, hydrophobic pocket, genome release prevention, Enterovirus B, Human

Dateibeschreibung: application/pdf

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39292620