Suchergebnisse - "bioinformatics workflow"

WeavePop: A bioinformatics workflow to explore and analyze genomic variants of eukaryotic populations

Autoren: Claudia Zirión-Martínez Paul M. Magwene

PathoSeq-QC: a decision support bioinformatics workflow for robust genomic surveillance

Autoren: Leoni, Gabriele Petrillo, Mauro Ruiz-Serra, Victoria et al.

Quelle: Bioinformatics

Schlagwörter: RNA viruses, FOS: Computer and information sciences, Rna viruses, Molecular biology, Epidemiology, SARS-CoV-2, Bioinformatics, COVID-19, Computational Biology, High-Throughput Nucleotide Sequencing, Genome, Viral, Genomics, Workflow, Decision Support Techniques, 3. Good health, Applications Note, Pandemic risks, NGS, Humans, Genomes, Software

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/40053686

OptimOTU: Taxonomically aware OTU clustering with optimized thresholds and a bioinformatics workflow for metabarcoding data

Autoren: Furneaux, Brendan Anslan, Sten Somervuo, Panu et al.

Schlagwörter: FOS: Biological sciences, Quantitative Biology - Quantitative Methods, Quantitative Methods (q-bio.QM)

Zugangs-URL: http://arxiv.org/abs/2502.10350

Combined Linkage Disequilibrium and Linkage Analysis (cLDLA): implementation of a powerful approach to identify the genetic basis of complex traits in a bioinformatics workflow

Autoren: M. Upadhyay A. Panchal I. Medugorac

MetaAll: integrative bioinformatics workflow for analysing clinical metagenomic data

Autoren: Martin Bosilj Alen Suljič Samo Zakotnik et al.

Quelle: Brief Bioinform

Schlagwörter: SARS-CoV-2, Problem Solving Protocol, Humans, Computational Biology, COVID-19, Metagenome, Metagenomics, Software, Workflow

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/39550223

iValiD-TB: a fully characterized Mycobacterium tuberculosis dataset for antimicrobial resistance bioinformatics workflow validations

Autoren: Pascal Lapierre Joseph Shea Shannon G. Murphy et al.

Quelle: Frontiers in Tuberculosis. 2

CMK: Enhancing Resource Usage Monitoring across Diverse Bioinformatics Workflow Management Systems

Autoren: Nica, Robert Götz, Stefan Moltó, Germán et al.

Weitere Verfasser: Nica, Robert Götz, Stefan Moltó, Germán et al.

Quelle: RiuNet. Repositorio Institucional de la Universitat Politécnica de Valéncia
Universitat Politècnica de València (UPV)

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Monitoring, High-throughput computing, Cloud computing, Bioinformatics Infrastructure, Workflow Management Systems

Dateibeschreibung: application/pdf

Zugangs-URL: https://riunet.upv.es/handle/10251/219973

549. Bioinformatics workflow for the detection of eQTL in the cattle genome using Nextflow DSL2

Autoren: P.K. Chitneedi F. Hadlich C. Kuehn

Quelle: Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP). :2277-2280

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences

A bioinformatics workflow to detect genes with DNA methylation alterations: a case study of analyzing MeDIP-seq data in cardiac microtissue exposed to epirubicin: A case study of analyzing MeDIP-seq data in cardiac microtissue exposed to epirubicin

Autoren: Nguyen, Nhan Lienhard, Matthias Herwig, Ralf et al.

Quelle: 2022 12th International Conference on Bioscience, Biochemistry and Bioinformatics. :63-69

Schlagwörter: 0301 basic medicine, 03 medical and health sciences, DNA methylation, toxicogenomics, MeDIP-seq, epirubicin, 3. Good health

Zugangs-URL: https://dl.acm.org/doi/pdf/10.1145/3510427.3510437

Adaptive Container Service: a New Paradigm for Robust and Optimized Bioinformatics Workflow Deployment in the Cloud

Autoren: Kevin Kang Jinwen Wo Jon Jiang et al.

BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow

Autoren: Qi Xin Quyu Kong Hongyi Ji et al.

An empirical DNA-based identification of morphologically similar snappers (Lutjanus campechanus, Lutjanus purpureus) using a versatile bioinformatics workflow for the discovery and analysis of informative single-nucleotide polymorphisms

Autoren: Robert A. Literman Mayara P. V. Matos Sara M. Handy et al.

Quelle: Frontiers in Marine Science, Vol 11 (2024)

Schlagwörter: 0301 basic medicine, 0303 health sciences, Lutjanus purpureus, Science, species identification, General. Including nature conservation, geographical distribution, single nucleotide polymorphisms (SNPs), QH1-199.5, 15. Life on land, red snapper, Lutjanus campechanus, 03 medical and health sciences, 14. Life underwater

Zugangs-URL: https://doaj.org/article/09d0e47538a14f9993cfc1f4e5416494

Benchmarks for Bioinformatics Workflow Bake Offs

Autoren: Vedran Kasalica Felipe Morato Anna-Lena Lamprecht et al.

Merging and concatenation of sequencing reads: a bioinformatics workflow for the comprehensive profiling of microbiome from amplicon data

Autoren: Meganathan P Ramakodi

Quelle: FEMS Microbiology Letters. 371

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, Bacteria, Microbiota, RNA, Ribosomal, 16S, RNA, Ribosomal, 18S, High-Throughput Nucleotide Sequencing, Computational Biology, 15. Life on land, Workflow

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/38305133

CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-Seq Analysis

Autoren: Xintao Qiu Avery S. Feit Ariel Feiglin et al.

Quelle: Genomics Proteomics Bioinformatics

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences, DNA Copy Number Variations, Application Note, Chromatin Immunoprecipitation Sequencing, Computational Biology, High-Throughput Nucleotide Sequencing, Sequence Analysis, DNA, Chromatin, Workflow

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/34284136
https://www.ncbi.nlm.nih.gov/pubmed/34284136
https://pubmed.ncbi.nlm.nih.gov/34284136/
https://www.sciencedirect.com/science/article/pii/S1672022921001546

snpGBS: A Simple and Flexible Bioinformatics Workflow to Identify SNPs from Genotyping-by-Sequencing Data

Autoren: Jie Kang Ken Dodds Stephen Byrne et al.

Quelle: Exploiting genetic diversity of forages to fulfil their economic and environmental roles: Proceedings of the 2021 Meeting of the Fodder Crops and Amenity Grasses Section of EUCARPIA. :67-70

Schlagwörter: 0301 basic medicine, 0303 health sciences, 03 medical and health sciences

Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers

Autoren: Laura Wratten Andreas Wilm Jonathan Göke

Quelle: Nature Methods. 18:1161-1168

Schlagwörter: 0301 basic medicine, 03 medical and health sciences, Biomedical Research, 0206 medical engineering, Computational Biology, Reproducibility of Results, 02 engineering and technology, Workflow

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/34556866
https://www.nature.com/articles/s41592-021-01254-9
https://www.ncbi.nlm.nih.gov/pubmed/34556866
https://www.nature.com/articles/s41592-021-01254-9.pdf
https://europepmc.org/article/MED/34556866
https://pubmed.ncbi.nlm.nih.gov/34556866/

Bioinformatics workflow management systems

Autoren: Yasha Hasija

Quelle: All About Bioinformatics ISBN: 9780443152504

Efficient bioinformatics workflow for de novo transcriptome assembly of Pelargonium zonale

Autoren: Milić, Dejana Pantelić, Ana Samardžić, Jelena et al.

Weitere Verfasser: Milić, Dejana Pantelić, Ana Samardžić, Jelena et al.

Quelle: 4th Belgrade Bioinformatics Conference

Schlagwörter: Pelargonium zonale, Trinity software, variegated plants, de novo transcriptomic assembly

Zugangs-URL: https://imagine.imgge.bg.ac.rs/bitstream/id/319743/BELBI-Abstracts-final-07072023_1-15
106
129.pdf
https://hdl.handle.net/21.15107/rcub_imagine_2035
https://imagine.imgge.bg.ac.rs/handle/123456789/2035

TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization

Autoren: Frank J. Ambrosio Michelle R. Scribner Sage M. Wright et al.

Quelle: Front Public Health
Frontiers in Public Health, Vol 11 (2023)

Schlagwörter: Computational Biology, bioinformatics, Genomics, Candida auris, 3. Good health, Workflow, Disease Outbreaks, whole-genome sequencing, epidemiology, Public Health, Public aspects of medicine, RA1-1270, Genome, Fungal, emerging pathogens

Zugangs-URL: https://pubmed.ncbi.nlm.nih.gov/37593727
https://doaj.org/article/58b6f6a7664c41a1ac2f3663aeb43c37