Search Results - "autoencoder"

Learning salient representation of crashes and near-crashes using supervised contrastive variational autoencoder.

Authors: Jiang B Guo F

Source: Accident; analysis and prevention [Accid Anal Prev] 2025 Sep; Vol. 220, pp. 108148. Date of Electronic Publication: 2025 Jun 30.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: England NLM ID: 1254476 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2057 (Electronic) Linking ISSN: 00014575 NLM ISO Abbreviation: Accid Anal Prev Subsets: MEDLINE

MeSH Terms: Accidents, Traffic*/statistics & numerical data , Accidents, Traffic*/prevention & control , Autoencoder* , Automobile Driving*, Humans ; Biomechanical Phenomena ; Deep Learning ; Safety

Autoencoder-Assisted Stacked Ensemble Learning for Lymphoma Subtype Classification: A Hybrid Deep Learning and Machine Learning Approach.

Authors: Ogundokun RO Owolawi PA Tu C et al.

Source: Tomography (Ann Arbor, Mich.) [Tomography] 2025 Aug 18; Vol. 11 (8). Date of Electronic Publication: 2025 Aug 18.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101671170 Publication Model: Electronic Cited Medium: Internet ISSN: 2379-139X (Electronic) Linking ISSN: 23791381 NLM ISO Abbreviation: Tomography Subsets: MEDLINE

MeSH Terms: Autoencoder* , Ensemble Learning* , Lymphoma*/diagnostic imaging , Lymphoma*/classification , Lymphoma*/pathology, Humans ; Algorithms ; Deep Learning ; Machine Learning ; Principal Component Analysis ; Support Vector Machine

A Innovative Strategy for Identifying Subtypes Through the Analysis of Multi-Omics Data with Adversarial Autoencoders.

Authors: Chen X Nie H Chen Q et al.

Source: Journal of computational biology : a journal of computational molecular cell biology [J Comput Biol] 2025 Sep; Vol. 32 (9), pp. 879-895. Date of Electronic Publication: 2025 Jun 26.

Publication Type: Journal Article

Journal Info: Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 9433358 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-8666 (Electronic) Linking ISSN: 10665277 NLM ISO Abbreviation: J Comput Biol Subsets: MEDLINE

MeSH Terms: Autoencoder* , Genomics*/methods , Neoplasms*/genetics , Neoplasms*/classification, Humans ; Algorithms ; Computational Biology/methods ; Multiomics ; Generative Adversarial Networks

Sparse autoencoders uncover biologically interpretable features in protein language model representations.

Authors: Gujral O Bafna M Alm E et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2025 Aug 26; Vol. 122 (34), pp. e2506316122. Date of Electronic Publication: 2025 Aug 19.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

MeSH Terms: Autoencoder* , Proteins*/chemistry , Proteins*/metabolism , Proteins*/genetics, Humans ; Computational Biology/methods ; Gene Ontology

A hybrid adversarial autoencoder-graph network model with dynamic fusion for robust scRNA-seq clustering.

Authors: Tang B Feng Y Gao X

Source: BMC genomics [BMC Genomics] 2025 Aug 18; Vol. 26 (1), pp. 749. Date of Electronic Publication: 2025 Aug 18.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

MeSH Terms: Autoencoder* , RNA-Seq*/methods , Single-Cell Gene Expression Analysis*/methods, Humans ; Cluster Analysis

Analyzing crises in global financial indices using Recurrent Neural Network based Autoencoder.

Authors: Mim MA Tuhin MKH Nobi A

Source: PloS one [PLoS One] 2025 Jul 14; Vol. 20 (7), pp. e0326947. Date of Electronic Publication: 2025 Jul 14 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Autoencoder* , Investments*/economics , Models, Economic* , Recurrent Neural Networks*, COVID-19/economics ; COVID-19/epidemiology ; Pandemics/economics

GAEDGRN: reconstruction of gene regulatory networks based on gravity-inspired graph autoencoders.

Authors: Wei PJ Jin HW Gao Z et al.

Source: Briefings in bioinformatics [Brief Bioinform] 2025 May 01; Vol. 26 (3).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH Terms: Autoencoder* , Computational Biology*/methods , Gene Regulatory Networks* , Neural Networks, Computer*, Humans

ICVAE: Interpretable Conditional Variational Autoencoder for De Novo Molecular Design.

Authors: Fan X Fang S Li Z et al.

Source: International journal of molecular sciences [Int J Mol Sci] 2025 Apr 23; Vol. 26 (9). Date of Electronic Publication: 2025 Apr 23.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

MeSH Terms: Autoencoder* , Drug Design*, Algorithms ; Drug Discovery/methods ; Machine Learning

scAMZI: attention-based deep autoencoder with zero-inflated layer for clustering scRNA-seq data.

Authors: Yuan L Xu Z Meng B et al.

Source: BMC genomics [BMC Genomics] 2025 Apr 07; Vol. 26 (1), pp. 350. Date of Electronic Publication: 2025 Apr 07.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

MeSH Terms: Autoencoder* , RNA-Seq*/methods , Sequence Analysis, RNA*/methods , Single-Cell Analysis*/methods , Software*, Humans ; Algorithms ; Cluster Analysis ; Computational Biology/methods ; Deep Learning ; Single-Cell Gene Expression Analysis

ECG Sensor Design Assessment with Variational Autoencoder-Based Digital Watermarking.

Authors: Hsu CY Chang CY Chen YC et al.

Source: Sensors (Basel, Switzerland) [Sensors (Basel)] 2025 Apr 05; Vol. 25 (7). Date of Electronic Publication: 2025 Apr 05.

Publication Type: Evaluation Study; Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101204366 Publication Model: Electronic Cited Medium: Internet ISSN: 1424-8220 (Electronic) Linking ISSN: 14248220 NLM ISO Abbreviation: Sensors (Basel) Subsets: MEDLINE

MeSH Terms: Autoencoder* , Electrocardiography*/methods , Electrocardiography*/instrumentation , Signal Processing, Computer-Assisted*, Humans ; Computer Security

NaMA-Mamba: Foundation model for generalizable nasal disease detection using masked autoencoder with Mamba on endoscopic images.

Authors: Wang W Jin Z Liu X et al.

Source: Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society [Comput Med Imaging Graph] 2025 Jun; Vol. 122, pp. 102524. Date of Electronic Publication: 2025 Mar 12.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Science Country of Publication: United States NLM ID: 8806104 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0771 (Electronic) Linking ISSN: 08956111 NLM ISO Abbreviation: Comput Med Imaging Graph Subsets: MEDLINE

MeSH Terms: Artificial Intelligence* , Autoencoder* , Endoscopy*/methods , Image Interpretation, Computer-Assisted*/methods , Nose Diseases*/diagnostic imaging, Humans ; Algorithms ; Machine Learning

Autoencoder techniques for survival analysis on renal cell carcinoma.

Authors: Sanz Ilundain I Hernández-Lorenzo L Rodríguez-Antona C et al.

Source: PloS one [PLoS One] 2025 May 15; Vol. 20 (5), pp. e0321045. Date of Electronic Publication: 2025 May 15 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

MeSH Terms: Autoencoder* , Carcinoma, Renal Cell*/genetics , Carcinoma, Renal Cell*/mortality , Carcinoma, Renal Cell*/drug therapy , Carcinoma, Renal Cell*/pathology , Kidney Neoplasms*/genetics , Kidney Neoplasms*/mortality , Kidney Neoplasms*/drug therapy , Kidney Neoplasms*/pathology, Humans ; Antibodies, Monoclonal, Humanized/therapeutic use ; Axitinib/therapeutic use ; Immunotherapy ; Progression-Free Survival ; Proportional Hazards Models ; Sunitinib/therapeutic use ; Survival Analysis ; Transcriptome

Discrete variational autoencoders BERT model-based transcranial focused ultrasound for Alzheimer's disease detection.

Authors: Thipparthy KR Kollu A Kulkarni C et al.

Source: Journal of neuroscience methods [J Neurosci Methods] 2025 Apr; Vol. 416, pp. 110386. Date of Electronic Publication: 2025 Feb 03.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier/North-Holland Biomedical Press Country of Publication: Netherlands NLM ID: 7905558 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1872-678X (Electronic) Linking ISSN: 01650270 NLM ISO Abbreviation: J Neurosci Methods Subsets: MEDLINE

MeSH Terms: Alzheimer Disease*/diagnosis , Alzheimer Disease*/diagnostic imaging , Alzheimer Disease*/physiopathology , Autoencoder* , Transcranial Magnetic Stimulation*/methods, Aged ; Female ; Humans ; Male ; Speech/physiology

FactVAE: a factorized variational autoencoder for single-cell multi-omics data integration analysis.

Authors: Wang L Zhang H Yi B et al.

Source: Briefings in bioinformatics [Brief Bioinform] 2025 Mar 04; Vol. 26 (2).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100912837 Publication Model: Print Cited Medium: Internet ISSN: 1477-4054 (Electronic) Linking ISSN: 14675463 NLM ISO Abbreviation: Brief Bioinform Subsets: MEDLINE

MeSH Terms: Autoencoder* , Computational Biology*/methods , Multiomics*/methods , Single-Cell Analysis*/methods, Humans ; Algorithms ; Neural Networks, Computer ; Software

Spatiotemporal multi-feature fusion vehicle trajectory anomaly detection for intelligent transportation: An improved method combining autoencoders and dynamic Bayesian networks.

Authors: Qiu M Mao S Zhu J et al.

Source: Accident; analysis and prevention [Accid Anal Prev] 2025 Mar; Vol. 211, pp. 107911. Date of Electronic Publication: 2025 Jan 03.

Publication Type: Journal Article

Journal Info: Publisher: Pergamon Press Country of Publication: England NLM ID: 1254476 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-2057 (Electronic) Linking ISSN: 00014575 NLM ISO Abbreviation: Accid Anal Prev Subsets: MEDLINE

MeSH Terms: Autonomous Vehicles* , Autoencoder* , Accidents, Traffic*/prevention & control, Bayes Theorem ; Time Factors ; Models, Statistical ; China

amVAE: Age-aware multimorbidity clustering using variational autoencoders.

Authors: Holm NN Le TM Frølich A et al.

Source: Computers in biology and medicine [Comput Biol Med] 2025 Mar; Vol. 186, pp. 109632. Date of Electronic Publication: 2025 Jan 16.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0534 (Electronic) Linking ISSN: 00104825 NLM ISO Abbreviation: Comput Biol Med Subsets: MEDLINE

MeSH Terms: Autoencoder* , Heart Diseases*/epidemiology , Multimorbidity*, Adult ; Aged ; Aged, 80 and over ; Female ; Humans ; Male ; Middle Aged ; Cluster Analysis ; Denmark/epidemiology

Design and use of a Denoising Convolutional Autoencoder for reconstructing electrocardiogram signals at super resolution.

Authors: Lomoio U Veltri P Guzzi PH et al.

Source: Artificial intelligence in medicine [Artif Intell Med] 2025 Feb; Vol. 160, pp. 103058. Date of Electronic Publication: 2024 Dec 28.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Science Publishing Country of Publication: Netherlands NLM ID: 8915031 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-2860 (Electronic) Linking ISSN: 09333657 NLM ISO Abbreviation: Artif Intell Med Subsets: MEDLINE

MeSH Terms: Autoencoder* , Electrocardiography*/methods , Signal Processing, Computer-Assisted*, Humans ; Algorithms ; Signal-To-Noise Ratio

EEG-to-EEG: Scalp-to-Intracranial EEG Translation Using a Combination of Variational Autoencoder and Generative Adversarial Networks.

Authors: Abdi-Sargezeh B Shirani S Valentin A et al.

Source: Sensors (Basel, Switzerland) [Sensors (Basel)] 2025 Jan 16; Vol. 25 (2). Date of Electronic Publication: 2025 Jan 16.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101204366 Publication Model: Electronic Cited Medium: Internet ISSN: 1424-8220 (Electronic) Linking ISSN: 14248220 NLM ISO Abbreviation: Sensors (Basel) Subsets: MEDLINE

MeSH Terms: Autoencoder* , Electroencephalography*/methods , Scalp*/physiology, Humans ; Algorithms ; Brain/physiology ; Epilepsy/physiopathology ; Generative Adversarial Networks ; Neural Networks, Computer ; Signal Processing, Computer-Assisted

Unveiling patterns in spatial transcriptomics data: a novel approach utilizing graph attention autoencoder and multiscale deep subspace clustering network.

Authors: Zhou L Peng X Chen M et al.

Source: GigaScience [Gigascience] 2025 Jan 06; Vol. 14.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 101596872 Publication Model: Print Cited Medium: Internet ISSN: 2047-217X (Electronic) Linking ISSN: 2047217X NLM ISO Abbreviation: Gigascience Subsets: MEDLINE

MeSH Terms: Autoencoder* , Computational Biology*/methods , Gene Expression Profiling*/methods , Transcriptome*, Animals ; Humans ; Mice ; Algorithms ; Cluster Analysis ; Software

Towards prediction of pseudo-normal SPECT image data using variational autoencoder.

Authors: Dudasova K Trnka J

Source: Nuclear medicine review. Central & Eastern Europe [Nucl Med Rev Cent East Eur] 2025; Vol. 28, pp. 9-17.

Publication Type: Journal Article

Journal Info: Publisher: Via Medica Country of Publication: Poland NLM ID: 100886103 Publication Model: Print Cited Medium: Internet ISSN: 1644-4345 (Electronic) Linking ISSN: 15069680 NLM ISO Abbreviation: Nucl Med Rev Cent East Eur Subsets: MEDLINE

MeSH Terms: Autoencoder* , Image Processing, Computer-Assisted*/methods , Tomography, Emission-Computed, Single-Photon*, Humans ; Brain/diagnostic imaging ; Tropanes